Wall clock time and date at job start Mon Mar 30 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46878 * 2 1 4 4 C 1.35897 * 116.99817 * 179.97438 * 3 2 1 5 5 C 1.38754 * 120.05719 * 359.95522 * 4 3 2 6 6 C 1.38122 * 119.94946 * 180.02562 * 5 4 3 7 7 C 1.38295 * 120.05026 * 0.02562 * 6 5 4 8 8 C 1.38242 * 120.11401 * 0.02562 * 7 6 5 9 9 C 1.38169 * 120.05494 * 359.94904 * 8 7 6 10 10 C 1.50694 * 120.02852 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47698 * 265.00579 * 10 9 8 12 12 C 1.52991 * 109.47526 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47083 * 54.99862 * 12 11 10 14 14 C 1.53003 * 109.47277 * 295.00403 * 12 11 10 15 15 C 1.50700 * 109.47625 * 174.99998 * 12 11 10 16 16 H 1.08001 * 119.99164 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00326 * 179.97438 * 15 12 11 18 18 N 1.31520 * 120.00156 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00105 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47320 * 60.00068 * 19 17 15 21 21 H 1.48500 * 109.47445 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47005 * 300.00255 * 19 17 15 23 23 H 1.09001 * 109.47321 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47403 * 300.00676 * 1 2 3 25 25 H 1.09000 * 109.46853 * 60.00435 * 1 2 3 26 26 H 1.08995 * 109.47403 * 239.99324 * 2 1 3 27 27 H 1.09000 * 109.46853 * 119.99565 * 2 1 3 28 28 H 1.08002 * 120.02758 * 0.04150 * 5 4 3 29 29 H 1.07997 * 119.97891 * 180.29657 * 6 5 4 30 30 H 1.07997 * 119.93892 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.97158 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.47092 * 25.00582 * 10 9 8 33 33 H 1.09006 * 109.47197 * 145.00350 * 10 9 8 34 34 H 1.08995 * 109.47074 * 300.00157 * 11 10 9 35 35 H 1.09006 * 109.46984 * 59.99640 * 11 10 9 36 36 H 1.09007 * 109.47055 * 299.99564 * 14 12 11 37 37 H 1.08996 * 109.47452 * 59.99369 * 14 12 11 38 38 H 1.08997 * 109.47345 * 179.97438 * 14 12 11 39 39 H 0.96998 * 120.00087 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4259 0.0020 6 6 5.5689 0.6094 0.0031 7 6 6.0961 1.8879 0.0032 8 6 5.2551 2.9851 0.0029 9 6 3.8850 2.8067 0.0013 10 6 2.9687 4.0031 0.0003 11 6 2.5572 4.3316 1.4367 12 6 1.6275 5.5467 1.4357 13 1 0.7823 5.3569 0.7741 14 6 2.3946 6.7755 0.9433 15 6 1.1245 5.7957 2.8343 16 1 1.4372 5.1518 3.6431 17 6 0.2662 6.8459 3.0816 18 7 -0.1141 7.6302 2.0967 19 14 -0.3566 7.1549 4.8153 20 1 0.7951 7.4132 5.7164 21 1 -1.2591 8.3342 4.8144 22 1 -1.1015 5.9625 5.2936 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.7886 -0.5728 0.0020 29 1 6.2280 -0.2460 -0.0006 30 1 7.1668 2.0294 0.0045 31 1 5.6694 3.9824 0.0034 32 1 3.4878 4.8579 -0.4335 33 1 2.0801 3.7797 -0.5902 34 1 2.0382 3.4770 1.8705 35 1 3.4458 4.5550 2.0272 36 1 3.2399 6.9654 1.6050 37 1 2.7584 6.5955 -0.0682 38 1 1.7321 7.6410 0.9422 39 1 -0.7177 8.3693 2.2707 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260887452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:16 Heat of formation + Delta-G solvation = -56.402940 kcal Electronic energy + Delta-G solvation = -17947.041909 eV Core-core repulsion = 15239.311996 eV Total energy + Delta-G solvation = -2707.729913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17214 -38.52305 -37.29130 -34.58447 -32.84246 -32.21018 -30.58808 -28.69401 -27.29052 -25.09100 -24.78573 -22.54125 -22.05902 -20.89050 -19.01504 -18.27286 -17.00980 -16.98554 -16.72078 -16.37449 -15.41896 -15.25745 -14.83548 -14.59120 -14.34851 -13.99268 -13.81411 -13.48971 -13.36678 -12.99549 -12.81138 -12.74168 -12.52793 -12.43536 -12.36165 -12.14656 -12.01938 -11.68465 -11.62138 -11.33026 -10.98046 -10.78023 -10.41571 -9.69941 -8.98981 -8.06673 -6.21412 0.44237 0.56806 1.40207 1.42237 1.50016 2.37763 2.43930 2.88113 3.19382 3.87354 3.92079 4.06053 4.12919 4.23758 4.33742 4.36702 4.43693 4.58424 4.60510 4.68346 4.78741 4.90750 4.93139 4.93997 5.01587 5.13582 5.18564 5.22951 5.34311 5.37590 5.45130 5.55427 5.60278 5.62730 5.70161 5.98157 6.01112 6.20556 6.41286 6.59372 6.90150 7.46421 8.97620 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.021762 B = 0.005585 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.353911 B = 5012.669728 C = 5745.489904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.337 6.337 4 C 0.110 3.890 5 C -0.213 4.213 6 C -0.089 4.089 7 C -0.158 4.158 8 C -0.092 4.092 9 C -0.130 4.130 10 C -0.062 4.062 11 C -0.077 4.077 12 C 0.039 3.961 13 H -0.010 1.010 14 C -0.125 4.125 15 C -0.535 4.535 16 H 0.047 0.953 17 C 0.011 3.989 18 N -0.918 5.918 19 Si 0.954 3.046 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.273 1.273 23 H 0.106 0.894 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.030 0.970 35 H 0.044 0.956 36 H 0.026 0.974 37 H 0.034 0.966 38 H 0.051 0.949 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.143 -16.315 -5.622 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.251 6.251 4 C 0.065 3.935 5 C -0.231 4.231 6 C -0.107 4.107 7 C -0.176 4.176 8 C -0.110 4.110 9 C -0.131 4.131 10 C -0.099 4.099 11 C -0.114 4.114 12 C 0.020 3.980 13 H 0.009 0.991 14 C -0.183 4.183 15 C -0.573 4.573 16 H 0.065 0.935 17 C -0.188 4.188 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.198 1.198 23 H 0.125 0.875 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.153 0.847 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.858 -16.025 -5.658 19.165 hybrid contribution -0.698 0.364 0.865 1.169 sum 8.160 -15.662 -4.794 18.299 Atomic orbital electron populations 1.21813 0.92336 1.04066 1.02642 1.23016 0.96435 0.81041 1.02214 1.86153 1.19389 1.31037 1.88553 1.19115 0.82766 0.94200 0.97453 1.21480 0.94855 0.97946 1.08844 1.21291 0.94161 0.98181 0.97079 1.21358 1.00823 0.92108 1.03275 1.21145 0.91280 1.00487 0.98096 1.19557 0.95055 0.92594 1.05844 1.20374 0.97449 0.94729 0.97365 1.21325 0.98042 0.97216 0.94868 1.18643 0.92759 0.91892 0.94657 0.99142 1.21658 0.98500 1.01124 0.96976 1.21550 1.27709 1.12931 0.95087 0.93451 1.25764 0.96403 0.95815 1.00775 1.70028 1.34866 1.18074 1.32849 0.85679 0.78359 0.77612 0.80415 1.19537 1.20630 1.19817 0.87498 0.93106 0.92275 0.90495 0.91276 0.83601 0.82795 0.83340 0.84741 0.90953 0.93034 0.95068 0.93753 0.95509 0.94759 0.93000 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 10.28 71.98 0.74 -2.44 16 2 C 0.05 1.08 5.46 71.98 0.39 1.47 16 3 O -0.34 -11.17 9.27 -92.39 -0.86 -12.03 16 4 C 0.11 3.49 6.66 22.51 0.15 3.64 16 5 C -0.21 -5.18 9.04 22.37 0.20 -4.98 16 6 C -0.09 -1.86 10.04 22.26 0.22 -1.64 16 7 C -0.16 -3.53 10.04 22.28 0.22 -3.31 16 8 C -0.09 -2.59 9.68 22.25 0.22 -2.38 16 9 C -0.13 -4.40 5.15 -19.77 -0.10 -4.50 16 10 C -0.06 -2.43 4.82 29.85 0.14 -2.28 16 11 C -0.08 -3.53 4.60 30.59 0.14 -3.39 16 12 C 0.04 2.10 2.30 -11.54 -0.03 2.08 16 13 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 14 C -0.12 -6.36 8.72 71.98 0.63 -5.73 16 15 C -0.53 -31.39 8.56 25.60 0.22 -31.17 16 16 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.92 -55.35 11.32 21.45 0.24 -55.11 16 19 Si 0.95 45.29 29.54 68.60 2.03 47.32 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.41 7.66 -2.39 -0.02 1.39 16 27 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 28 H 0.15 2.73 6.30 -2.91 -0.02 2.71 16 29 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 31 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.07 2.69 6.47 -2.38 -0.02 2.67 16 33 H 0.05 2.15 7.69 -2.38 -0.02 2.13 16 34 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.03 1.52 6.56 -2.39 -0.02 1.50 16 38 H 0.05 2.92 6.07 -2.39 -0.01 2.90 16 39 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -67.78 317.76 6.02 -61.77 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.00 Total: 11.60 kcal Atomic # 6 Polarization: -57.16 SS G_CDS: 3.60 Total: -53.56 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.24 Total: -55.11 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.86 Total: -12.03 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.78 6.02 -61.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260887452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.366 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds