Wall clock time and date at job start Mon Mar 30 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 O 1.42897 * 109.47371 * 239.99585 * 2 1 3 5 5 C 1.53005 * 109.47268 * 119.99364 * 2 1 3 6 6 C 1.50706 * 109.46710 * 59.99980 * 5 2 1 7 7 C 1.38253 * 120.00297 * 269.95223 * 6 5 2 8 8 C 1.38205 * 119.99884 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.00475 * 0.02562 * 8 7 6 10 10 C 1.38208 * 119.99554 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99804 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47008 * 270.01729 * 11 10 9 13 13 C 1.50700 * 109.47388 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99520 * 0.02562 * 13 12 11 15 15 C 1.37866 * 120.00290 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00101 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00181 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46805 * 60.00033 * 17 15 13 19 19 H 1.48503 * 109.47295 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46888 * 300.00561 * 17 15 13 21 21 C 1.38220 * 119.99654 * 90.00415 * 6 5 2 22 22 H 1.09002 * 109.46987 * 300.00205 * 1 2 3 23 23 H 1.08998 * 109.47161 * 60.00609 * 1 2 3 24 24 H 1.09002 * 109.46897 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46846 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46690 * 299.99680 * 3 2 1 27 27 H 1.08994 * 109.47040 * 59.99595 * 3 2 1 28 28 H 0.96701 * 114.00155 * 179.97438 * 4 2 1 29 29 H 1.08997 * 109.47031 * 300.00292 * 5 2 1 30 30 H 1.08996 * 109.47256 * 179.97438 * 5 2 1 31 31 H 1.08005 * 119.99964 * 0.02562 * 7 6 5 32 32 H 1.08000 * 119.99783 * 180.02562 * 8 7 6 33 33 H 1.07992 * 119.99989 * 179.97438 * 9 8 7 34 34 H 1.08990 * 109.47415 * 30.02092 * 11 10 9 35 35 H 1.09006 * 109.46768 * 150.01991 * 11 10 9 36 36 H 1.09000 * 109.47213 * 299.99878 * 12 11 10 37 37 H 1.09000 * 109.47148 * 60.00017 * 12 11 10 38 38 H 0.97005 * 120.00400 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99660 * 0.27001 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 6 1.5377 -2.1420 1.2494 7 6 0.3301 -2.4483 1.8489 8 6 -0.1308 -3.7512 1.8485 9 6 0.6159 -4.7485 1.2490 10 6 1.8236 -4.4425 0.6506 11 6 2.6378 -5.5296 -0.0023 12 6 3.5930 -6.1387 1.0260 13 6 4.4068 -7.2263 0.3732 14 1 4.2579 -7.4593 -0.6708 15 6 5.3422 -7.9229 1.1085 16 7 5.5239 -7.6388 2.3796 17 14 6.3504 -9.2715 0.2996 18 1 7.1327 -8.6978 -0.8247 19 1 7.2777 -9.8627 1.2976 20 1 5.4419 -10.3264 -0.2172 21 6 2.2847 -3.1391 0.6510 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 2.9704 -0.7115 -1.2330 29 1 1.6767 -0.2072 2.1392 30 1 3.1300 -0.7215 1.2491 31 1 -0.2534 -1.6692 2.3169 32 1 -1.0743 -3.9904 2.3165 33 1 0.2559 -5.7667 1.2491 34 1 1.9716 -6.3038 -0.3827 35 1 3.2125 -5.1075 -0.8268 36 1 4.2593 -5.3645 1.4063 37 1 3.0183 -6.5607 1.8505 38 1 6.1817 -8.1292 2.8971 39 1 3.2305 -2.9007 0.1873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260998088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:40 Heat of formation + Delta-G solvation = -59.799547 kcal Electronic energy + Delta-G solvation = -17777.774043 eV Core-core repulsion = 15069.896842 eV Total energy + Delta-G solvation = -2707.877201 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56993 -37.80021 -34.21976 -33.02072 -31.89536 -31.00244 -28.87724 -27.46291 -26.41633 -24.96907 -21.99481 -21.48392 -20.39420 -19.52943 -16.68130 -16.23182 -15.88575 -15.44970 -14.97369 -14.62005 -14.47352 -14.27898 -13.25713 -12.88877 -12.62004 -12.48276 -12.35738 -12.32328 -12.15147 -11.96151 -11.76329 -11.66553 -11.20683 -10.94125 -10.86844 -10.71353 -10.58795 -10.40659 -10.00284 -9.75754 -9.53969 -9.07717 -8.34284 -8.26070 -7.95255 -5.97618 -4.00733 1.82987 1.90955 3.34683 3.38883 3.41537 4.12190 4.27527 4.47965 4.69517 4.76674 4.95187 5.17050 5.24211 5.37679 5.41230 5.43524 5.47872 5.61248 5.66941 5.73772 5.83084 5.88588 5.96262 5.99179 6.08066 6.20993 6.26528 6.49303 6.61780 6.72924 6.91826 6.99466 7.06872 7.24997 7.53022 7.68264 7.70437 7.85835 8.02618 8.43415 9.06210 9.63163 11.13367 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.031611 B = 0.004503 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.563291 B = 6216.104924 C = 6634.361333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.132 3.868 3 C -0.178 4.178 4 O -0.553 6.553 5 C -0.105 4.105 6 C -0.076 4.076 7 C -0.137 4.137 8 C -0.121 4.121 9 C -0.125 4.125 10 C -0.054 4.054 11 C -0.080 4.080 12 C 0.031 3.969 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.104 4.104 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.374 0.626 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 16.297 -2.331 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.091 3.909 3 C -0.236 4.236 4 O -0.359 6.359 5 C -0.143 4.143 6 C -0.076 4.076 7 C -0.155 4.155 8 C -0.139 4.139 9 C -0.143 4.143 10 C -0.054 4.054 11 C -0.117 4.117 12 C -0.006 4.006 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.122 4.122 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.221 0.779 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.830 16.186 -2.280 19.074 hybrid contribution 1.246 -0.718 -0.093 1.441 sum -8.584 15.468 -2.373 17.849 Atomic orbital electron populations 1.21820 0.92880 1.03514 1.01636 1.21133 0.95058 0.89891 0.84802 1.22509 1.01508 0.96937 1.02597 1.86595 1.26457 1.79481 1.43340 1.21300 1.01085 0.93320 0.98589 1.19504 0.95153 0.94302 0.98635 1.20782 0.96432 0.96275 1.02058 1.20994 0.99623 0.93167 1.00135 1.21049 0.95095 0.99036 0.99111 1.20331 0.94160 0.94941 0.95987 1.20829 0.97427 0.94358 0.99126 1.19057 0.93005 0.95176 0.93374 1.21236 1.20041 1.18186 0.96599 0.92662 1.25016 0.97168 0.97336 0.94838 1.69966 1.34845 1.41507 1.07112 0.86661 0.80078 0.82211 0.79067 1.20229 1.21299 1.20229 1.20827 0.99437 0.92135 0.99820 0.91596 0.92388 0.90942 0.92304 0.91874 0.91707 0.77918 0.90497 0.90846 0.87136 0.86867 0.86466 0.92351 0.92319 0.96535 0.96502 0.92963 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.25 37.16 0.31 -1.18 16 2 C 0.13 1.39 1.08 -90.61 -0.10 1.30 16 3 C -0.18 -1.48 8.82 37.16 0.33 -1.15 16 4 O -0.55 -6.80 12.25 -35.23 -0.43 -7.24 16 5 C -0.11 -1.20 4.62 -27.88 -0.13 -1.33 16 6 C -0.08 -1.12 4.34 -104.62 -0.45 -1.58 16 7 C -0.14 -1.95 7.89 -39.59 -0.31 -2.27 16 8 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 9 C -0.12 -2.20 9.70 -39.58 -0.38 -2.58 16 10 C -0.05 -1.04 5.13 -104.63 -0.54 -1.58 16 11 C -0.08 -1.72 5.28 -27.88 -0.15 -1.87 16 12 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 13 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.10 -1.80 8.93 -39.58 -0.35 -2.16 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.90 6.18 -51.93 -0.32 0.57 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.37 3.50 9.05 45.56 0.41 3.92 16 29 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.11 1.28 8.03 -52.48 -0.42 0.86 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 35 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -31.85 322.81 -8.36 -40.21 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.78 Total: 1.57 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.73 Total: -29.67 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.43 Total: -7.24 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.85 -8.36 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.594 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds