Wall clock time and date at job start Mon Mar 30 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 O 1.42897 * 109.47371 * 239.99585 * 2 1 3 5 5 C 1.53005 * 109.47268 * 119.99364 * 2 1 3 6 6 C 1.50706 * 109.46710 * 59.99980 * 5 2 1 7 7 C 1.38253 * 120.00297 * 269.95223 * 6 5 2 8 8 C 1.38205 * 119.99884 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.00475 * 0.02562 * 8 7 6 10 10 C 1.38208 * 119.99554 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99804 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47008 * 270.01729 * 11 10 9 13 13 C 1.50700 * 109.47388 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99520 * 0.02562 * 13 12 11 15 15 C 1.37866 * 120.00290 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00101 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00181 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46805 * 60.00033 * 17 15 13 19 19 H 1.48503 * 109.47295 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46888 * 300.00561 * 17 15 13 21 21 C 1.38220 * 119.99654 * 90.00415 * 6 5 2 22 22 H 1.09002 * 109.46987 * 300.00205 * 1 2 3 23 23 H 1.08998 * 109.47161 * 60.00609 * 1 2 3 24 24 H 1.09002 * 109.46897 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46846 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46690 * 299.99680 * 3 2 1 27 27 H 1.08994 * 109.47040 * 59.99595 * 3 2 1 28 28 H 0.96701 * 114.00155 * 179.97438 * 4 2 1 29 29 H 1.08997 * 109.47031 * 300.00292 * 5 2 1 30 30 H 1.08996 * 109.47256 * 179.97438 * 5 2 1 31 31 H 1.08005 * 119.99964 * 0.02562 * 7 6 5 32 32 H 1.08000 * 119.99783 * 180.02562 * 8 7 6 33 33 H 1.07992 * 119.99989 * 179.97438 * 9 8 7 34 34 H 1.08990 * 109.47415 * 30.02092 * 11 10 9 35 35 H 1.09006 * 109.46768 * 150.01991 * 11 10 9 36 36 H 1.09000 * 109.47213 * 299.99878 * 12 11 10 37 37 H 1.09000 * 109.47148 * 60.00017 * 12 11 10 38 38 H 0.97005 * 120.00400 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99660 * 0.27001 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 6 1.5377 -2.1420 1.2494 7 6 0.3301 -2.4483 1.8489 8 6 -0.1308 -3.7512 1.8485 9 6 0.6159 -4.7485 1.2490 10 6 1.8236 -4.4425 0.6506 11 6 2.6378 -5.5296 -0.0023 12 6 3.5930 -6.1387 1.0260 13 6 4.4068 -7.2263 0.3732 14 1 4.2579 -7.4593 -0.6708 15 6 5.3422 -7.9229 1.1085 16 7 5.5239 -7.6388 2.3796 17 14 6.3504 -9.2715 0.2996 18 1 7.1327 -8.6978 -0.8247 19 1 7.2777 -9.8627 1.2976 20 1 5.4419 -10.3264 -0.2172 21 6 2.2847 -3.1391 0.6510 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 2.9704 -0.7115 -1.2330 29 1 1.6767 -0.2072 2.1392 30 1 3.1300 -0.7215 1.2491 31 1 -0.2534 -1.6692 2.3169 32 1 -1.0743 -3.9904 2.3165 33 1 0.2559 -5.7667 1.2491 34 1 1.9716 -6.3038 -0.3827 35 1 3.2125 -5.1075 -0.8268 36 1 4.2593 -5.3645 1.4063 37 1 3.0183 -6.5607 1.8505 38 1 6.1817 -8.1292 2.8971 39 1 3.2305 -2.9007 0.1873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260998088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:40 Heat of formation + Delta-G solvation = -78.773632 kcal Electronic energy + Delta-G solvation = -17778.596821 eV Core-core repulsion = 15069.896842 eV Total energy + Delta-G solvation = -2708.699979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69994 -38.82399 -36.01321 -34.40250 -33.47043 -32.06771 -30.59277 -28.22340 -27.44200 -26.86971 -23.68479 -22.84321 -21.47342 -20.83262 -18.55333 -17.54161 -17.08356 -16.55505 -16.53484 -15.82698 -15.74165 -15.47301 -14.58973 -14.50259 -14.12907 -14.03157 -13.60033 -13.26191 -13.22341 -12.98509 -12.92999 -12.82854 -12.64642 -12.54031 -12.47840 -12.04574 -11.93227 -11.65174 -11.61525 -11.47405 -11.15870 -10.82655 -10.56879 -9.53877 -9.30327 -8.20601 -6.33438 0.56601 0.62155 1.39327 1.42923 1.50963 2.40331 2.94408 3.11698 3.41775 3.80606 3.94727 4.07562 4.12607 4.15171 4.29078 4.35158 4.51375 4.57249 4.73042 4.80398 4.85250 4.85745 4.90259 4.97769 5.00979 5.06493 5.11875 5.26494 5.30801 5.37076 5.42027 5.46979 5.58588 5.65651 5.77079 5.82630 5.96493 6.20668 6.26638 6.82747 6.92720 7.36076 8.90787 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.031611 B = 0.004503 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.563291 B = 6216.104924 C = 6634.361333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.130 3.870 3 C -0.172 4.172 4 O -0.577 6.577 5 C -0.104 4.104 6 C -0.073 4.073 7 C -0.131 4.131 8 C -0.121 4.121 9 C -0.145 4.145 10 C -0.086 4.086 11 C -0.065 4.065 12 C 0.041 3.959 13 C -0.547 4.547 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.121 4.121 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.383 0.617 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.058 0.942 35 H 0.059 0.941 36 H -0.012 1.012 37 H -0.013 1.013 38 H 0.264 0.736 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 17.686 -2.373 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.090 3.910 3 C -0.229 4.229 4 O -0.384 6.384 5 C -0.141 4.141 6 C -0.073 4.073 7 C -0.149 4.149 8 C -0.138 4.138 9 C -0.163 4.163 10 C -0.086 4.086 11 C -0.103 4.103 12 C 0.003 3.997 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.139 4.139 22 H 0.108 0.892 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.231 0.769 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.007 0.993 37 H 0.006 0.994 38 H 0.073 0.927 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.440 17.585 -2.334 20.583 hybrid contribution 1.381 -1.075 -0.039 1.750 sum -9.059 16.510 -2.374 18.981 Atomic orbital electron populations 1.21869 0.92782 1.02455 1.02908 1.21255 0.95186 0.90928 0.83669 1.22438 1.01905 0.95179 1.03388 1.86568 1.27513 1.80039 1.44316 1.21384 1.01328 0.91302 1.00098 1.19878 0.94931 0.95461 0.97016 1.21236 0.96136 0.96739 1.00741 1.21344 1.00308 0.93018 0.99174 1.21173 0.95218 0.99872 1.00064 1.20208 0.95191 0.95061 0.98174 1.20540 0.96723 0.95181 0.97812 1.18872 0.92994 0.94125 0.93662 1.21678 1.20726 1.18994 0.97120 0.92057 1.26001 0.98352 0.99953 0.95371 1.70108 1.35621 1.42856 1.08760 0.85472 0.78354 0.78827 0.78224 1.19021 1.20680 1.19129 1.20935 0.99932 0.92204 1.00804 0.89173 0.92387 0.93039 0.91721 0.91882 0.90093 0.76873 0.88226 0.90649 0.83578 0.83921 0.86777 0.92368 0.92273 0.99315 0.99435 0.92711 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.25 71.98 0.59 -2.04 16 2 C 0.13 2.45 1.08 -10.79 -0.01 2.44 16 3 C -0.17 -2.36 8.82 71.98 0.63 -1.72 16 4 O -0.58 -13.68 12.25 -148.98 -1.82 -15.50 16 5 C -0.10 -2.12 4.62 29.85 0.14 -1.98 16 6 C -0.07 -2.05 4.34 -19.86 -0.09 -2.14 16 7 C -0.13 -3.40 7.89 22.27 0.18 -3.22 16 8 C -0.12 -3.47 10.05 22.27 0.22 -3.25 16 9 C -0.15 -5.20 9.70 22.27 0.22 -4.98 16 10 C -0.09 -3.43 5.13 -19.87 -0.10 -3.53 16 11 C -0.07 -2.94 5.28 29.85 0.16 -2.79 16 12 C 0.04 2.26 4.95 29.85 0.15 2.41 16 13 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 14 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -58.23 13.29 21.44 0.28 -57.95 16 17 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 C -0.12 -4.25 8.93 22.27 0.20 -4.05 16 22 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 1.16 6.18 -2.39 -0.01 1.15 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.38 7.01 9.05 -74.06 -0.67 6.34 16 29 H 0.10 1.61 8.09 -2.39 -0.02 1.59 16 30 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 31 H 0.15 2.75 8.03 -2.91 -0.02 2.73 16 32 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.11 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.06 2.55 8.08 -2.39 -0.02 2.53 16 35 H 0.06 2.59 8.09 -2.38 -0.02 2.57 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 39 H 0.11 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -70.23 322.81 3.80 -66.43 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.34 Total: 16.34 kcal Atomic # 6 Polarization: -59.33 SS G_CDS: 2.98 Total: -56.35 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.28 Total: -57.95 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.82 Total: -15.50 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.23 3.80 -66.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.345 kcal (2) G-P(sol) polarization free energy of solvation -70.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds