Wall clock time and date at job start Mon Mar 30 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47164 * 2 1 4 4 O 1.42903 * 109.47171 * 239.99734 * 2 1 3 5 5 C 1.53003 * 109.47376 * 120.00361 * 2 1 3 6 6 C 1.53002 * 109.47338 * 185.00117 * 5 2 1 7 7 C 1.50699 * 109.47059 * 180.02562 * 6 5 2 8 8 C 1.38236 * 119.99400 * 269.72263 * 7 6 5 9 9 C 1.38247 * 119.99499 * 179.74289 * 8 7 6 10 10 C 1.38231 * 119.99831 * 0.53213 * 9 8 7 11 11 C 1.50700 * 119.99809 * 179.76631 * 10 9 8 12 12 C 1.52999 * 109.47008 * 269.97705 * 11 10 9 13 13 C 1.50700 * 109.47008 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99991 * 0.02562 * 13 12 11 15 15 C 1.37884 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99718 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99792 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46898 * 90.00151 * 17 15 13 19 19 H 1.48508 * 109.46857 * 209.99974 * 17 15 13 20 20 H 1.48500 * 109.47288 * 330.00020 * 17 15 13 21 21 C 1.38241 * 120.00238 * 359.74394 * 10 9 8 22 22 C 1.38229 * 120.00380 * 89.99449 * 7 6 5 23 23 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47124 * 299.99701 * 1 2 3 25 25 H 1.08997 * 109.47215 * 60.00097 * 1 2 3 26 26 H 0.96700 * 114.00311 * 300.00378 * 4 2 1 27 27 H 1.09005 * 109.46682 * 304.99749 * 5 2 1 28 28 H 1.08999 * 109.47221 * 64.99915 * 5 2 1 29 29 H 1.09005 * 109.46490 * 299.99775 * 6 5 2 30 30 H 1.08999 * 109.47130 * 59.99742 * 6 5 2 31 31 H 1.07997 * 120.00240 * 0.02562 * 8 7 6 32 32 H 1.07997 * 119.99672 * 180.29796 * 9 8 7 33 33 H 1.09000 * 109.47262 * 29.97650 * 11 10 9 34 34 H 1.08998 * 109.47351 * 149.97781 * 11 10 9 35 35 H 1.09000 * 109.47509 * 299.99768 * 12 11 10 36 36 H 1.08998 * 109.47462 * 60.00133 * 12 11 10 37 37 H 0.97003 * 119.99532 * 180.02562 * 16 15 13 38 38 H 1.07992 * 120.00097 * 179.97438 * 21 10 9 39 39 H 1.08001 * 120.00236 * 0.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3137 7 6 4.0673 -1.3244 2.5437 8 6 4.2047 -0.6339 3.7334 9 6 4.6605 -1.2874 4.8631 10 6 4.9893 -2.6286 4.8004 11 6 5.4912 -3.3397 6.0306 12 6 7.0160 -3.2322 6.0954 13 6 7.5178 -3.9428 7.3260 14 1 6.8190 -4.4233 7.9948 15 6 8.8690 -3.9794 7.5981 16 7 9.7199 -3.3947 6.7834 17 14 9.4911 -4.8608 9.1231 18 1 9.7714 -6.2815 8.7939 19 1 10.7371 -4.2077 9.5986 20 1 8.4592 -4.7939 10.1890 21 6 4.8573 -3.3177 3.6093 22 6 4.3960 -2.6655 2.4811 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7210 -1.5953 -1.2329 27 1 1.6055 -0.2618 2.1370 28 1 1.7517 -1.7716 1.2055 29 1 3.9995 -1.0729 0.4258 30 1 3.8533 0.4369 1.3573 31 1 3.9517 0.4149 3.7813 32 1 4.7633 -0.7491 5.7937 33 1 5.0566 -2.8804 6.9185 34 1 5.2025 -4.3898 5.9865 35 1 7.4507 -3.6915 5.2076 36 1 7.3047 -2.1821 6.1396 37 1 10.6705 -3.4208 6.9747 38 1 5.1145 -4.3653 3.5602 39 1 4.2932 -3.2039 1.5504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261069621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:21 Heat of formation + Delta-G solvation = -68.203348 kcal Electronic energy + Delta-G solvation = -17020.121487 eV Core-core repulsion = 14311.879870 eV Total energy + Delta-G solvation = -2708.241617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.25563 -38.02008 -34.75675 -33.20556 -31.87290 -30.50616 -30.36511 -28.00090 -25.27792 -23.37761 -22.29963 -21.72573 -21.08535 -19.79763 -16.60671 -16.41467 -16.17395 -15.65330 -15.06978 -14.71494 -14.45889 -14.18858 -13.53570 -13.26549 -13.05611 -12.85336 -12.47663 -12.33629 -12.26942 -12.12456 -11.67785 -11.24226 -11.12597 -10.96573 -10.91354 -10.77754 -10.55218 -10.49652 -10.10479 -9.80158 -9.56766 -9.08686 -8.51084 -8.33836 -7.91949 -5.99092 -4.02289 1.78955 1.82256 3.32137 3.38272 3.41602 4.06494 4.19256 4.46426 4.51466 4.74891 4.81724 5.03158 5.19308 5.28379 5.36238 5.36479 5.38300 5.50399 5.56241 5.60023 5.66760 5.78976 5.89198 5.96310 6.11190 6.12594 6.24112 6.44777 6.56115 6.68171 6.87238 6.94802 7.03660 7.20126 7.38429 7.47824 7.68956 7.83603 8.01066 8.41499 9.04863 9.61648 11.11956 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.064660 B = 0.003205 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.928940 B = 8733.700092 C = 8803.216268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.099 3.901 3 H 0.097 0.903 4 O -0.564 6.564 5 C -0.145 4.145 6 C -0.071 4.071 7 C -0.107 4.107 8 C -0.118 4.118 9 C -0.119 4.119 10 C -0.059 4.059 11 C -0.081 4.081 12 C 0.030 3.970 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.119 4.119 22 C -0.117 4.117 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.374 0.626 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.261 0.739 38 H 0.119 0.881 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.959 5.620 -12.187 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.041 3.959 3 H 0.115 0.885 4 O -0.370 6.370 5 C -0.182 4.182 6 C -0.108 4.108 7 C -0.107 4.107 8 C -0.136 4.136 9 C -0.137 4.137 10 C -0.059 4.059 11 C -0.118 4.118 12 C -0.007 4.007 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.137 4.137 22 C -0.135 4.135 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.221 0.779 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.137 0.863 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.500 6.244 -12.318 21.516 hybrid contribution 0.250 -0.990 1.052 1.466 sum -16.250 5.253 -11.266 20.459 Atomic orbital electron populations 1.22510 0.96664 1.02528 1.02640 1.21981 0.92548 0.96823 0.84591 0.88473 1.86583 1.77267 1.29041 1.44070 1.22314 0.96257 1.01315 0.98341 1.20451 0.94502 1.00167 0.95714 1.19698 1.01673 0.94276 0.95005 1.20921 1.00830 0.99142 0.92676 1.21067 0.99792 0.94498 0.98390 1.20371 0.95019 0.94093 0.96389 1.20840 1.00147 0.98313 0.92500 1.19065 0.87206 0.97374 0.97034 1.21266 0.92025 1.34445 1.08337 0.92616 1.25033 0.97055 0.95627 0.96740 1.69976 1.02378 1.43951 1.37041 0.86593 0.78334 0.79752 0.83314 1.20651 1.21212 1.19865 1.21066 1.00023 1.00102 0.92553 1.20910 1.00388 0.94127 0.98060 0.92338 0.91544 0.91970 0.77936 0.90944 0.91523 0.90769 0.91484 0.86881 0.86315 0.92319 0.92325 0.96475 0.96469 0.92979 0.86316 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 9.53 37.16 0.35 -0.85 16 2 C 0.10 0.79 3.59 -26.73 -0.10 0.69 16 3 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 4 O -0.56 -5.06 12.87 -35.23 -0.45 -5.51 16 5 C -0.14 -1.28 4.88 -26.73 -0.13 -1.41 16 6 C -0.07 -0.78 5.24 -27.88 -0.15 -0.92 16 7 C -0.11 -1.49 5.13 -104.63 -0.54 -2.02 16 8 C -0.12 -1.74 9.70 -39.58 -0.38 -2.13 16 9 C -0.12 -2.05 9.70 -39.58 -0.38 -2.43 16 10 C -0.06 -1.10 5.13 -104.62 -0.54 -1.64 16 11 C -0.08 -1.71 5.28 -27.88 -0.15 -1.86 16 12 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.12 -2.05 9.70 -39.58 -0.38 -2.43 16 22 C -0.12 -1.73 9.70 -39.59 -0.38 -2.12 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.37 2.13 9.05 45.56 0.41 2.54 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.83 7.77 -51.93 -0.40 0.42 16 30 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -31.71 328.62 -8.98 -40.69 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.87 Total: -0.17 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -3.32 Total: -30.18 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.45 Total: -5.51 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.71 -8.98 -40.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.514 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds