Wall clock time and date at job start Mon Mar 30 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00221 * 2 1 4 4 H 1.48501 * 109.47454 * 240.00235 * 3 2 1 5 5 H 1.48506 * 109.47019 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47248 * 119.99561 * 3 2 1 7 7 C 1.37879 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46769 * 299.99577 * 9 7 2 11 11 C 1.50696 * 109.47091 * 59.99935 * 9 7 2 12 12 C 1.39867 * 126.04245 * 59.99852 * 11 9 7 13 13 N 1.30834 * 108.20347 * 179.97438 * 12 11 9 14 14 N 1.40082 * 108.20758 * 0.02562 * 13 12 11 15 15 H 0.97001 * 126.04598 * 180.02562 * 14 13 12 16 16 C 1.34954 * 107.92310 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.47095 * 179.97438 * 9 7 2 18 18 C 1.54234 * 108.89632 * 182.88347 * 17 9 7 19 19 C 1.50469 * 108.52763 * 159.26390 * 18 17 9 20 20 C 1.54072 * 112.50180 * 94.14913 * 19 18 17 21 21 C 1.54067 * 112.81191 * 318.28772 * 20 19 18 22 22 C 1.50475 * 112.49929 * 318.28077 * 21 20 19 23 23 C 1.45551 * 108.89699 * 59.99728 * 17 9 7 24 24 H 0.96996 * 119.99766 * 0.02562 * 1 2 3 25 25 H 1.08000 * 125.89932 * 0.02562 * 12 11 9 26 26 H 1.08001 * 126.12517 * 179.73977 * 16 14 13 27 27 H 1.08997 * 108.87243 * 301.39631 * 17 9 7 28 28 H 1.09007 * 109.62837 * 278.97105 * 18 17 9 29 29 H 1.08998 * 109.62939 * 39.54902 * 18 17 9 30 30 H 1.08999 * 108.87534 * 333.37418 * 19 18 17 31 31 H 1.09002 * 108.88179 * 214.92902 * 19 18 17 32 32 H 1.08996 * 108.81659 * 197.42535 * 20 19 18 33 33 H 1.08997 * 108.72838 * 79.08375 * 20 19 18 34 34 H 1.09009 * 108.87439 * 197.50384 * 21 20 19 35 35 H 1.08996 * 108.80182 * 79.00845 * 21 20 19 36 36 H 1.09002 * 109.62612 * 334.44791 * 22 21 20 37 37 H 1.08998 * 109.62790 * 213.86834 * 22 21 20 38 38 H 1.08998 * 108.89474 * 303.44786 * 23 17 9 39 39 H 1.09000 * 108.88849 * 61.93435 * 23 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 0.3851 -2.5793 -1.2302 12 6 0.8320 -2.5384 -2.5549 13 7 -0.2095 -2.6351 -3.3408 14 7 -1.3539 -2.7402 -2.5398 15 1 -2.2667 -2.8250 -2.8569 16 6 -0.9623 -2.7025 -1.2489 17 6 2.2453 -3.6621 0.0005 18 6 1.4622 -4.9888 -0.0729 19 6 2.3871 -6.0627 -0.5784 20 6 3.0550 -6.8515 0.5642 21 6 3.5162 -5.9480 1.7238 22 6 4.1545 -4.6734 1.2419 23 6 3.0750 -3.5730 1.1931 24 1 -0.4849 0.8400 -0.0004 25 1 1.8595 -2.4442 -2.8740 26 1 -1.6087 -2.7574 -0.3855 27 1 2.8828 -3.5810 -0.8798 28 1 1.0997 -5.2555 0.9200 29 1 0.6199 -4.8795 -0.7561 30 1 3.1632 -5.6010 -1.1888 31 1 1.8181 -6.7548 -1.1991 32 1 3.9200 -7.3819 0.1663 33 1 2.3424 -7.5810 0.9490 34 1 4.2366 -6.4952 2.3320 35 1 2.6524 -5.6988 2.3399 36 1 4.5680 -4.8252 0.2448 37 1 4.9474 -4.3784 1.9291 38 1 3.5631 -2.5986 1.2114 39 1 2.4386 -3.6635 2.0733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261082875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:28 Heat of formation + Delta-G solvation = 45.707750 kcal Electronic energy + Delta-G solvation = -19028.367972 eV Core-core repulsion = 16357.358662 eV Total energy + Delta-G solvation = -2671.009310 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04231 -38.40149 -34.26640 -31.82126 -31.59103 -30.21106 -29.15288 -26.61995 -24.19596 -23.91317 -21.79730 -20.81857 -19.33903 -18.94347 -18.57974 -16.83699 -15.72264 -15.30461 -14.43216 -14.22017 -13.65773 -13.41003 -13.30043 -13.15133 -12.41716 -12.37325 -12.24829 -11.65936 -11.58736 -11.53150 -11.10055 -10.87666 -10.74980 -10.31739 -10.21245 -10.05296 -9.88257 -9.75956 -9.61330 -9.33459 -8.95514 -8.85422 -8.42256 -8.33666 -6.99970 -5.86780 -3.94899 3.10923 3.36257 3.41162 3.43925 4.00200 4.23840 4.51547 5.11690 5.23236 5.28449 5.43158 5.68005 5.79043 5.79798 5.93361 6.04654 6.09186 6.12830 6.14987 6.20613 6.30966 6.55565 6.57406 6.64606 6.68939 6.78535 6.82965 6.92756 6.99618 7.05315 7.23411 7.30079 7.36843 7.60574 7.88255 7.94948 8.11331 8.38958 8.49993 8.86513 9.07466 9.69181 11.15890 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.009453 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.866363 B = 2961.310994 C = 4098.652248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.115 3.885 10 H 0.028 0.972 11 C -0.133 4.133 12 C 0.055 3.945 13 N -0.332 5.332 14 N -0.500 5.500 15 H 0.421 0.579 16 C 0.042 3.958 17 C -0.068 4.068 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.103 4.103 24 H 0.255 0.745 25 H 0.164 0.836 26 H 0.154 0.846 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 -9.903 1.205 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.095 3.905 10 H 0.046 0.954 11 C -0.144 4.144 12 C -0.131 4.131 13 N -0.156 5.156 14 N -0.209 5.209 15 H 0.262 0.738 16 C -0.102 4.102 17 C -0.087 4.087 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.141 4.141 24 H 0.065 0.935 25 H 0.181 0.819 26 H 0.171 0.829 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.536 -9.812 0.039 9.932 hybrid contribution 0.132 1.225 0.662 1.399 sum 1.668 -8.587 0.701 8.775 Atomic orbital electron populations 1.69974 1.05754 1.25976 1.49817 1.24906 0.94686 0.98624 0.95146 0.86845 0.79741 0.84000 0.78466 1.20454 1.21705 1.20418 1.21068 0.92548 0.90119 1.51011 0.92464 1.17304 0.91135 0.91745 0.90294 0.95373 1.20344 0.92484 1.05748 0.95859 1.23470 0.97245 0.99781 0.92599 1.77005 0.92129 1.27108 1.19359 1.45981 1.07860 1.62373 1.04693 0.73791 1.22027 0.96818 1.04587 0.86756 1.20015 0.96939 0.94321 0.97428 1.21424 0.98115 0.94916 1.00474 1.21338 0.98919 0.97747 0.97217 1.21892 0.99242 0.97729 0.96189 1.21333 0.99996 0.96404 0.97524 1.21389 0.98264 0.95408 1.00689 1.20492 0.96524 0.98413 0.98646 0.93498 0.81913 0.82871 0.92848 0.92942 0.91945 0.92347 0.93605 0.93238 0.93156 0.93535 0.92149 0.92239 0.93046 0.90911 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.21 12.11 55.43 0.67 -23.54 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 3 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -12.94 7.59 -34.44 -0.26 -13.20 16 8 H 0.06 1.44 6.62 -52.48 -0.35 1.09 16 9 C 0.11 2.60 1.71 -92.92 -0.16 2.45 16 10 H 0.03 0.70 8.11 -51.93 -0.42 0.28 16 11 C -0.13 -2.97 2.05 -105.06 -0.22 -3.19 16 12 C 0.05 1.22 11.54 -17.37 -0.20 1.02 16 13 N -0.33 -7.20 12.70 30.62 0.39 -6.81 16 14 N -0.50 -9.68 7.36 30.45 0.22 -9.45 16 15 H 0.42 6.53 8.96 -182.61 -1.64 4.89 16 16 C 0.04 0.88 11.38 -17.22 -0.20 0.69 16 17 C -0.07 -1.29 1.20 -93.49 -0.11 -1.40 16 18 C -0.11 -1.88 4.90 -27.35 -0.13 -2.01 16 19 C -0.11 -1.68 5.31 -27.44 -0.15 -1.82 16 20 C -0.11 -1.46 5.85 -25.61 -0.15 -1.61 16 21 C -0.12 -1.53 5.32 -27.44 -0.15 -1.68 16 22 C -0.12 -1.76 5.61 -27.35 -0.15 -1.91 16 23 C -0.10 -1.83 4.34 -29.60 -0.13 -1.96 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.16 3.41 8.06 -52.49 -0.42 2.99 16 26 H 0.15 2.98 8.06 -52.49 -0.42 2.56 16 27 H 0.05 1.05 7.36 -51.93 -0.38 0.66 16 28 H 0.05 0.86 6.97 -51.93 -0.36 0.50 16 29 H 0.06 1.14 6.39 -51.93 -0.33 0.81 16 30 H 0.06 0.88 6.63 -51.93 -0.34 0.53 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.06 0.84 6.63 -51.93 -0.34 0.50 16 36 H 0.06 0.87 6.98 -51.93 -0.36 0.51 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.42 6.22 -51.93 -0.32 1.10 16 39 H 0.05 0.90 7.47 -51.93 -0.39 0.51 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -28.05 298.60 -8.67 -36.72 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.34 Total: 5.41 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -2.10 Total: -22.88 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 1.28 Total: -39.80 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.05 -8.67 -36.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.428 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds