Wall clock time and date at job start Mon Mar 30 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00221 * 2 1 4 4 H 1.48501 * 109.47454 * 240.00235 * 3 2 1 5 5 H 1.48506 * 109.47019 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47248 * 119.99561 * 3 2 1 7 7 C 1.37879 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46769 * 299.99577 * 9 7 2 11 11 C 1.50696 * 109.47091 * 59.99935 * 9 7 2 12 12 C 1.39867 * 126.04245 * 59.99852 * 11 9 7 13 13 N 1.30834 * 108.20347 * 179.97438 * 12 11 9 14 14 N 1.40082 * 108.20758 * 0.02562 * 13 12 11 15 15 H 0.97001 * 126.04598 * 180.02562 * 14 13 12 16 16 C 1.34954 * 107.92310 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.47095 * 179.97438 * 9 7 2 18 18 C 1.54234 * 108.89632 * 182.88347 * 17 9 7 19 19 C 1.50469 * 108.52763 * 159.26390 * 18 17 9 20 20 C 1.54072 * 112.50180 * 94.14913 * 19 18 17 21 21 C 1.54067 * 112.81191 * 318.28772 * 20 19 18 22 22 C 1.50475 * 112.49929 * 318.28077 * 21 20 19 23 23 C 1.45551 * 108.89699 * 59.99728 * 17 9 7 24 24 H 0.96996 * 119.99766 * 0.02562 * 1 2 3 25 25 H 1.08000 * 125.89932 * 0.02562 * 12 11 9 26 26 H 1.08001 * 126.12517 * 179.73977 * 16 14 13 27 27 H 1.08997 * 108.87243 * 301.39631 * 17 9 7 28 28 H 1.09007 * 109.62837 * 278.97105 * 18 17 9 29 29 H 1.08998 * 109.62939 * 39.54902 * 18 17 9 30 30 H 1.08999 * 108.87534 * 333.37418 * 19 18 17 31 31 H 1.09002 * 108.88179 * 214.92902 * 19 18 17 32 32 H 1.08996 * 108.81659 * 197.42535 * 20 19 18 33 33 H 1.08997 * 108.72838 * 79.08375 * 20 19 18 34 34 H 1.09009 * 108.87439 * 197.50384 * 21 20 19 35 35 H 1.08996 * 108.80182 * 79.00845 * 21 20 19 36 36 H 1.09002 * 109.62612 * 334.44791 * 22 21 20 37 37 H 1.08998 * 109.62790 * 213.86834 * 22 21 20 38 38 H 1.08998 * 108.89474 * 303.44786 * 23 17 9 39 39 H 1.09000 * 108.88849 * 61.93435 * 23 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 0.3851 -2.5793 -1.2302 12 6 0.8320 -2.5384 -2.5549 13 7 -0.2095 -2.6351 -3.3408 14 7 -1.3539 -2.7402 -2.5398 15 1 -2.2667 -2.8250 -2.8569 16 6 -0.9623 -2.7025 -1.2489 17 6 2.2453 -3.6621 0.0005 18 6 1.4622 -4.9888 -0.0729 19 6 2.3871 -6.0627 -0.5784 20 6 3.0550 -6.8515 0.5642 21 6 3.5162 -5.9480 1.7238 22 6 4.1545 -4.6734 1.2419 23 6 3.0750 -3.5730 1.1931 24 1 -0.4849 0.8400 -0.0004 25 1 1.8595 -2.4442 -2.8740 26 1 -1.6087 -2.7574 -0.3855 27 1 2.8828 -3.5810 -0.8798 28 1 1.0997 -5.2555 0.9200 29 1 0.6199 -4.8795 -0.7561 30 1 3.1632 -5.6010 -1.1888 31 1 1.8181 -6.7548 -1.1991 32 1 3.9200 -7.3819 0.1663 33 1 2.3424 -7.5810 0.9490 34 1 4.2366 -6.4952 2.3320 35 1 2.6524 -5.6988 2.3399 36 1 4.5680 -4.8252 0.2448 37 1 4.9474 -4.3784 1.9291 38 1 3.5631 -2.5986 1.2114 39 1 2.4386 -3.6635 2.0733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261082875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:28 Heat of formation + Delta-G solvation = 31.220369 kcal Electronic energy + Delta-G solvation = -19028.996192 eV Core-core repulsion = 16357.358662 eV Total energy + Delta-G solvation = -2671.637530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71186 -39.77400 -35.87937 -33.60204 -32.85247 -31.86430 -30.76666 -28.35969 -25.72131 -25.26661 -23.35077 -22.52277 -20.84064 -20.45412 -19.92642 -18.63781 -17.50452 -16.76928 -16.19014 -15.43264 -15.15271 -14.97978 -14.88832 -14.62731 -14.05150 -13.92834 -13.65002 -13.19770 -13.16034 -12.81329 -12.76444 -12.70451 -12.44772 -12.05257 -11.63102 -11.33915 -11.32499 -11.03557 -11.02349 -10.94437 -10.57920 -10.54333 -10.34587 -10.09880 -8.74891 -7.87826 -6.01432 1.40664 1.44478 1.46276 1.50577 2.42374 2.48339 2.57074 3.37586 3.93274 4.07558 4.18306 4.34780 4.47691 4.50907 4.58225 4.61323 4.69637 4.77752 4.84125 5.07402 5.10335 5.14614 5.20334 5.32123 5.38233 5.46783 5.50378 5.54283 5.58926 5.62767 5.71308 5.76638 5.81750 5.83496 6.03620 6.19151 6.29250 6.54867 6.85881 7.08394 7.18017 7.63805 9.10065 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.009453 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.866363 B = 2961.310994 C = 4098.652248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.117 3.883 10 H 0.000 1.000 11 C -0.149 4.149 12 C 0.040 3.960 13 N -0.341 5.341 14 N -0.483 5.483 15 H 0.440 0.560 16 C 0.043 3.957 17 C -0.058 4.058 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.110 4.110 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.101 4.101 24 H 0.250 0.750 25 H 0.168 0.832 26 H 0.166 0.834 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 -11.239 1.262 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.176 4.176 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.097 3.903 10 H 0.018 0.982 11 C -0.160 4.160 12 C -0.145 4.145 13 N -0.166 5.166 14 N -0.195 5.195 15 H 0.284 0.716 16 C -0.102 4.102 17 C -0.077 4.077 18 C -0.139 4.139 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.138 4.138 24 H 0.059 0.941 25 H 0.185 0.815 26 H 0.183 0.817 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.179 -11.156 0.085 11.367 hybrid contribution -0.104 1.639 0.653 1.767 sum 2.075 -9.517 0.738 9.768 Atomic orbital electron populations 1.70082 1.06591 1.25909 1.51330 1.25488 0.95376 1.01109 0.95620 0.86066 0.78649 0.81080 0.78462 1.20471 1.22189 1.19789 1.21395 0.92619 0.91375 1.49447 0.92786 1.17224 0.91415 0.92237 0.89416 0.98213 1.20303 0.93118 1.06900 0.95676 1.23587 0.97766 1.00511 0.92637 1.76947 0.92555 1.27335 1.19726 1.45959 1.08438 1.61036 1.04035 0.71623 1.22202 0.96684 1.03760 0.87571 1.19893 0.96158 0.94105 0.97500 1.21278 0.97796 0.94509 1.00294 1.21291 0.98426 0.97272 0.98044 1.21871 1.00018 0.97533 0.95287 1.21316 1.00141 0.95892 0.97864 1.21317 0.97419 0.94936 1.01292 1.20429 0.97071 0.98613 0.97723 0.94138 0.81489 0.81721 0.93710 0.92740 0.93525 0.92882 0.92715 0.91590 0.91995 0.91347 0.92980 0.92062 0.91852 0.93318 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.17 12.11 21.45 0.26 -49.91 16 2 C 0.02 1.27 5.30 84.65 0.45 1.72 16 3 Si 0.93 43.53 29.54 68.60 2.03 45.55 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.51 -26.27 7.59 25.60 0.19 -26.08 16 8 H 0.05 2.76 6.62 -2.91 -0.02 2.74 16 9 C 0.12 5.38 1.71 -12.29 -0.02 5.36 16 10 H 0.00 -0.01 8.11 -2.39 -0.02 -0.03 16 11 C -0.15 -6.66 2.05 -20.15 -0.04 -6.70 16 12 C 0.04 1.77 11.54 85.24 0.98 2.76 16 13 N -0.34 -14.51 12.70 -57.03 -0.72 -15.24 16 14 N -0.48 -18.19 7.36 -57.59 -0.42 -18.61 16 15 H 0.44 12.90 8.96 -213.33 -1.91 10.99 16 16 C 0.04 1.79 11.38 83.54 0.95 2.74 16 17 C -0.06 -2.19 1.20 -12.65 -0.02 -2.20 16 18 C -0.10 -3.33 4.90 30.19 0.15 -3.18 16 19 C -0.11 -3.07 5.31 30.14 0.16 -2.91 16 20 C -0.11 -2.48 5.85 31.32 0.18 -2.30 16 21 C -0.11 -2.74 5.32 30.14 0.16 -2.58 16 22 C -0.11 -3.08 5.61 30.19 0.17 -2.91 16 23 C -0.10 -3.56 4.34 28.73 0.12 -3.43 16 24 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 25 H 0.17 7.04 8.06 -2.91 -0.02 7.02 16 26 H 0.17 6.35 8.06 -2.91 -0.02 6.33 16 27 H 0.04 1.76 7.36 -2.39 -0.02 1.74 16 28 H 0.05 1.75 6.97 -2.38 -0.02 1.73 16 29 H 0.05 1.67 6.39 -2.39 -0.02 1.66 16 30 H 0.05 1.50 6.63 -2.39 -0.02 1.49 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.05 1.34 6.63 -2.39 -0.02 1.32 16 36 H 0.06 1.67 6.98 -2.39 -0.02 1.66 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.92 6.22 -2.39 -0.01 1.91 16 39 H 0.04 1.53 7.47 -2.39 -0.02 1.52 16 Total: -1.00 -58.95 298.60 3.71 -55.24 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.88 Total: 22.68 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 3.45 Total: -39.72 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -0.89 Total: -83.76 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -58.95 3.71 -55.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.464 kcal (2) G-P(sol) polarization free energy of solvation -58.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds