Wall clock time and date at job start Mon Mar 30 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 H 1.09001 * 109.46976 * 305.46530 * 3 2 1 5 5 C 1.50698 * 109.47397 * 185.46612 * 3 2 1 6 6 H 1.07992 * 120.00081 * 270.70384 * 5 3 2 7 7 C 1.37879 * 120.00029 * 90.70194 * 5 3 2 8 8 N 1.31516 * 119.99789 * 2.52109 * 7 5 3 9 9 Si 1.86800 * 120.00249 * 182.51981 * 7 5 3 10 10 H 1.48502 * 109.47199 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46980 * 300.00188 * 9 7 5 12 12 H 1.48505 * 109.46848 * 60.00027 * 9 7 5 13 13 C 1.50696 * 109.47063 * 65.46451 * 3 2 1 14 14 C 1.38164 * 120.03022 * 238.71373 * 13 3 2 15 15 C 1.50693 * 119.97250 * 359.97438 * 14 13 3 16 16 C 1.38250 * 120.05402 * 179.97438 * 14 13 3 17 17 C 1.38289 * 120.11249 * 359.97438 * 16 14 13 18 18 C 1.50697 * 119.97339 * 180.02562 * 17 16 14 19 19 C 1.38119 * 120.05531 * 0.02562 * 17 16 14 20 20 C 1.38714 * 120.02720 * 58.43609 * 13 3 2 21 21 O 1.35909 * 120.05265 * 0.02562 * 20 13 3 22 22 C 1.42901 * 116.99750 * 180.02562 * 21 20 13 23 23 H 1.08996 * 109.47552 * 59.99807 * 1 2 3 24 24 H 1.09005 * 109.47228 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47020 * 299.99432 * 1 2 3 26 26 H 1.09005 * 109.47020 * 240.00568 * 2 1 3 27 27 H 1.08996 * 109.47552 * 120.00193 * 2 1 3 28 28 H 0.96997 * 120.00327 * 354.20864 * 8 7 5 29 29 H 1.09002 * 109.47293 * 83.79660 * 15 14 13 30 30 H 1.09006 * 109.47102 * 203.79667 * 15 14 13 31 31 H 1.09002 * 109.47171 * 323.79558 * 15 14 13 32 32 H 1.08001 * 119.93936 * 179.97438 * 16 14 13 33 33 H 1.09004 * 109.47471 * 89.99066 * 18 17 16 34 34 H 1.08996 * 109.47333 * 209.99406 * 18 17 16 35 35 H 1.09001 * 109.46726 * 329.99587 * 18 17 16 36 36 H 1.08002 * 120.02852 * 179.97438 * 19 17 16 37 37 H 1.09004 * 109.46856 * 299.99912 * 22 21 20 38 38 H 1.08998 * 109.47050 * 59.99724 * 22 21 20 39 39 H 1.09000 * 109.46821 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9838 -0.8370 5 6 3.5409 1.4447 -0.1353 6 1 4.1626 1.4043 0.7467 7 6 4.1203 1.4982 -1.3853 8 7 3.3642 1.5974 -2.4568 9 14 5.9791 1.4299 -1.5570 10 1 6.3466 1.5035 -2.9939 11 1 6.5856 2.5747 -0.8311 12 1 6.4828 0.1565 -0.9823 13 6 1.6512 2.1127 1.2925 14 6 0.8724 3.2538 1.2727 15 6 0.4121 3.8284 -0.0422 16 6 0.5149 3.8688 2.4582 17 6 0.9353 3.3436 3.6664 18 6 0.5434 4.0162 4.9568 19 6 1.7140 2.2032 3.6916 20 6 2.0701 1.5814 2.5034 21 8 2.8320 0.4561 2.5257 22 6 3.2265 -0.0348 3.8084 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.3989 1.5484 -2.3756 29 1 -0.4896 3.3106 -0.3693 30 1 0.1972 4.8900 0.0806 31 1 1.1958 3.7003 -0.7889 32 1 -0.0936 4.7609 2.4405 33 1 -0.3996 3.6002 5.3116 34 1 1.3187 3.8482 5.7042 35 1 0.4274 5.0868 4.7878 36 1 2.0423 1.7936 4.6354 37 1 3.8125 0.7260 4.3242 38 1 2.3391 -0.2702 4.3960 39 1 3.8285 -0.9349 3.6835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:41 Heat of formation + Delta-G solvation = -38.786925 kcal Electronic energy + Delta-G solvation = -19024.886610 eV Core-core repulsion = 16317.920584 eV Total energy + Delta-G solvation = -2706.966025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84277 -37.17816 -35.40138 -32.56498 -31.54758 -30.35984 -27.87009 -26.97307 -26.49301 -24.88825 -22.87910 -21.38661 -20.31393 -19.30458 -16.93318 -16.64617 -15.77549 -15.15402 -14.77735 -13.66409 -13.65610 -13.53762 -13.39620 -13.21249 -13.10368 -12.62893 -12.40109 -12.15179 -11.88288 -11.59682 -11.43416 -11.21223 -10.92315 -10.87953 -10.72090 -10.57122 -10.35454 -10.07155 -9.96313 -9.86602 -9.04734 -8.56251 -8.23174 -7.80885 -7.21162 -6.21966 -3.90255 1.98430 2.13149 3.49589 3.51196 3.69784 3.95899 4.36927 4.63093 5.18079 5.27982 5.44579 5.47302 5.51966 5.52346 5.70454 5.76262 5.81726 5.87896 5.95770 6.00958 6.07916 6.14600 6.21029 6.24366 6.28991 6.37462 6.66199 6.74207 6.81749 6.91166 7.01784 7.10007 7.21459 7.34090 7.47847 7.52193 7.84727 8.16399 8.37871 8.63291 9.01617 9.77554 11.15462 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.008644 C = 0.007917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.773044 B = 3238.350438 C = 3535.751178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.064 3.936 4 H 0.050 0.950 5 C -0.568 4.568 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.919 5.919 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.289 1.289 13 C -0.056 4.056 14 C -0.062 4.062 15 C -0.111 4.111 16 C -0.158 4.158 17 C -0.080 4.080 18 C -0.105 4.105 19 C -0.220 4.220 20 C 0.134 3.866 21 O -0.285 6.285 22 C 0.025 3.975 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.268 0.732 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 1.146 11.395 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.046 3.954 4 H 0.068 0.932 5 C -0.606 4.606 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.216 1.216 13 C -0.057 4.057 14 C -0.063 4.063 15 C -0.168 4.168 16 C -0.177 4.177 17 C -0.080 4.080 18 C -0.161 4.161 19 C -0.239 4.239 20 C 0.089 3.911 21 O -0.197 6.197 22 C -0.071 4.071 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.801 1.121 10.122 10.870 hybrid contribution -1.182 -0.108 1.607 1.998 sum -4.983 1.013 11.729 12.784 Atomic orbital electron populations 1.21867 0.99015 0.99321 1.00404 1.21781 0.91924 1.00174 1.01211 1.18071 0.96924 0.91068 0.89347 0.93235 1.21902 0.90281 1.53645 0.94770 0.92856 1.25727 1.06559 0.93929 0.92327 1.70799 1.06849 1.47156 1.30827 0.83613 0.74862 0.76409 0.75786 1.20975 1.21704 1.21583 1.19761 0.95742 0.95112 0.95046 1.19557 0.97007 0.94716 0.94978 1.20794 1.01675 0.99202 0.95106 1.20641 1.04115 1.01338 0.91581 1.19371 0.98362 0.95524 0.94770 1.20673 1.00940 0.99863 0.94653 1.20925 1.06524 0.99766 0.96695 1.18828 0.92009 0.87005 0.93296 1.86399 1.65436 1.39293 1.28592 1.22941 0.99178 0.99372 0.85605 0.93816 0.94705 0.93979 0.93097 0.92193 0.92009 0.91857 0.92603 0.90043 0.87138 0.91941 0.92299 0.92032 0.86702 0.93527 0.93771 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.73 37.15 0.36 -2.58 16 2 C -0.11 -2.62 5.23 -26.73 -0.14 -2.76 16 3 C 0.06 1.60 1.47 -92.93 -0.14 1.46 16 4 H 0.05 1.29 3.95 -51.93 -0.21 1.08 16 5 C -0.57 -15.86 7.72 -34.44 -0.27 -16.13 16 6 H 0.05 1.54 6.76 -52.49 -0.36 1.18 16 7 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 8 N -0.92 -27.40 13.61 55.43 0.75 -26.65 16 9 Si 1.06 25.70 29.90 -169.99 -5.08 20.61 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 C -0.06 -1.25 3.78 -104.48 -0.40 -1.65 16 14 C -0.06 -1.26 5.88 -104.65 -0.62 -1.87 16 15 C -0.11 -2.04 9.18 36.00 0.33 -1.71 16 16 C -0.16 -2.80 9.33 -39.56 -0.37 -3.17 16 17 C -0.08 -1.34 5.88 -104.65 -0.62 -1.96 16 18 C -0.10 -1.31 10.01 36.00 0.36 -0.94 16 19 C -0.22 -3.95 8.69 -39.43 -0.34 -4.29 16 20 C 0.13 2.81 6.17 -39.22 -0.24 2.57 16 21 O -0.28 -5.90 6.63 -19.45 -0.13 -6.03 16 22 C 0.02 0.37 9.81 101.05 0.99 1.36 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.82 7.40 -51.93 -0.38 0.43 16 26 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.40 5.88 -51.93 -0.31 1.09 16 28 H 0.27 7.91 6.59 -40.82 -0.27 7.64 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 31 H 0.08 1.72 6.48 -51.93 -0.34 1.38 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.12 1.76 6.30 -52.49 -0.33 1.42 16 37 H 0.05 0.64 7.65 -51.93 -0.40 0.25 16 38 H 0.04 0.58 7.67 -51.93 -0.40 0.18 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -30.85 309.60 -6.96 -37.81 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.99 Total: 0.85 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: -1.17 Total: -31.27 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.75 Total: -26.65 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.13 Total: -6.03 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.85 -6.96 -37.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.976 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds