Wall clock time and date at job start Mon Mar 30 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 H 1.09001 * 109.46976 * 305.46530 * 3 2 1 5 5 C 1.50698 * 109.47397 * 185.46612 * 3 2 1 6 6 H 1.07992 * 120.00081 * 270.70384 * 5 3 2 7 7 C 1.37879 * 120.00029 * 90.70194 * 5 3 2 8 8 N 1.31516 * 119.99789 * 2.52109 * 7 5 3 9 9 Si 1.86800 * 120.00249 * 182.51981 * 7 5 3 10 10 H 1.48502 * 109.47199 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46980 * 300.00188 * 9 7 5 12 12 H 1.48505 * 109.46848 * 60.00027 * 9 7 5 13 13 C 1.50696 * 109.47063 * 65.46451 * 3 2 1 14 14 C 1.38164 * 120.03022 * 238.71373 * 13 3 2 15 15 C 1.50693 * 119.97250 * 359.97438 * 14 13 3 16 16 C 1.38250 * 120.05402 * 179.97438 * 14 13 3 17 17 C 1.38289 * 120.11249 * 359.97438 * 16 14 13 18 18 C 1.50697 * 119.97339 * 180.02562 * 17 16 14 19 19 C 1.38119 * 120.05531 * 0.02562 * 17 16 14 20 20 C 1.38714 * 120.02720 * 58.43609 * 13 3 2 21 21 O 1.35909 * 120.05265 * 0.02562 * 20 13 3 22 22 C 1.42901 * 116.99750 * 180.02562 * 21 20 13 23 23 H 1.08996 * 109.47552 * 59.99807 * 1 2 3 24 24 H 1.09005 * 109.47228 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47020 * 299.99432 * 1 2 3 26 26 H 1.09005 * 109.47020 * 240.00568 * 2 1 3 27 27 H 1.08996 * 109.47552 * 120.00193 * 2 1 3 28 28 H 0.96997 * 120.00327 * 354.20864 * 8 7 5 29 29 H 1.09002 * 109.47293 * 83.79660 * 15 14 13 30 30 H 1.09006 * 109.47102 * 203.79667 * 15 14 13 31 31 H 1.09002 * 109.47171 * 323.79558 * 15 14 13 32 32 H 1.08001 * 119.93936 * 179.97438 * 16 14 13 33 33 H 1.09004 * 109.47471 * 89.99066 * 18 17 16 34 34 H 1.08996 * 109.47333 * 209.99406 * 18 17 16 35 35 H 1.09001 * 109.46726 * 329.99587 * 18 17 16 36 36 H 1.08002 * 120.02852 * 179.97438 * 19 17 16 37 37 H 1.09004 * 109.46856 * 299.99912 * 22 21 20 38 38 H 1.08998 * 109.47050 * 59.99724 * 22 21 20 39 39 H 1.09000 * 109.46821 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9838 -0.8370 5 6 3.5409 1.4447 -0.1353 6 1 4.1626 1.4043 0.7467 7 6 4.1203 1.4982 -1.3853 8 7 3.3642 1.5974 -2.4568 9 14 5.9791 1.4299 -1.5570 10 1 6.3466 1.5035 -2.9939 11 1 6.5856 2.5747 -0.8311 12 1 6.4828 0.1565 -0.9823 13 6 1.6512 2.1127 1.2925 14 6 0.8724 3.2538 1.2727 15 6 0.4121 3.8284 -0.0422 16 6 0.5149 3.8688 2.4582 17 6 0.9353 3.3436 3.6664 18 6 0.5434 4.0162 4.9568 19 6 1.7140 2.2032 3.6916 20 6 2.0701 1.5814 2.5034 21 8 2.8320 0.4561 2.5257 22 6 3.2265 -0.0348 3.8084 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.3989 1.5484 -2.3756 29 1 -0.4896 3.3106 -0.3693 30 1 0.1972 4.8900 0.0806 31 1 1.1958 3.7003 -0.7889 32 1 -0.0936 4.7609 2.4405 33 1 -0.3996 3.6002 5.3116 34 1 1.3187 3.8482 5.7042 35 1 0.4274 5.0868 4.7878 36 1 2.0423 1.7936 4.6354 37 1 3.8125 0.7260 4.3242 38 1 2.3391 -0.2702 4.3960 39 1 3.8285 -0.9349 3.6835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:41 Heat of formation + Delta-G solvation = -55.218291 kcal Electronic energy + Delta-G solvation = -19025.599127 eV Core-core repulsion = 16317.920584 eV Total energy + Delta-G solvation = -2707.678543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30593 -38.60583 -37.13400 -34.24043 -33.36109 -31.77677 -29.37600 -28.31150 -27.90793 -26.52595 -24.79536 -22.87040 -21.89809 -20.89353 -18.86617 -18.11405 -17.29769 -16.53998 -16.31098 -15.63515 -15.20158 -15.09040 -14.82750 -14.53636 -14.46627 -14.14134 -13.93193 -13.69390 -13.25949 -12.94717 -12.82448 -12.67305 -12.64742 -12.43939 -12.32004 -12.22947 -11.95910 -11.90486 -11.70158 -11.39946 -10.80842 -10.56108 -10.37335 -9.27451 -8.75370 -8.44156 -6.14138 0.54009 0.69793 1.50922 1.58913 1.77923 2.60440 2.62841 2.93152 3.31709 3.95775 3.97941 4.19436 4.31642 4.37676 4.41262 4.42717 4.47331 4.56366 4.58624 4.64404 4.70781 4.75405 4.81081 4.88913 4.91549 5.03540 5.09297 5.15619 5.17949 5.31019 5.43623 5.48865 5.61935 5.72248 5.76408 5.93672 6.14729 6.30521 6.38888 6.74600 6.85274 7.60085 8.90956 Molecular weight = 248.15amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.008644 C = 0.007917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.773044 B = 3238.350438 C = 3535.751178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.067 3.933 4 H 0.029 0.971 5 C -0.571 4.571 6 H 0.039 0.961 7 C -0.034 4.034 8 N -0.945 5.945 9 Si 1.105 2.895 10 H -0.284 1.284 11 H -0.278 1.278 12 H -0.275 1.275 13 C -0.099 4.099 14 C -0.076 4.076 15 C -0.105 4.105 16 C -0.162 4.162 17 C -0.072 4.072 18 C -0.102 4.102 19 C -0.223 4.223 20 C 0.117 3.883 21 O -0.321 6.321 22 C 0.017 3.983 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.257 0.743 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.140 0.860 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.805 1.938 14.168 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.049 3.951 4 H 0.047 0.953 5 C -0.609 4.609 6 H 0.057 0.943 7 C -0.231 4.231 8 N -0.584 5.584 9 Si 0.929 3.071 10 H -0.210 1.210 11 H -0.204 1.204 12 H -0.201 1.201 13 C -0.099 4.099 14 C -0.076 4.076 15 C -0.162 4.162 16 C -0.180 4.180 17 C -0.072 4.072 18 C -0.159 4.159 19 C -0.241 4.241 20 C 0.072 3.928 21 O -0.234 6.234 22 C -0.078 4.078 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.158 0.842 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.160 0.840 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.497 1.909 12.922 13.814 hybrid contribution -1.009 -0.350 0.881 1.385 sum -5.506 1.559 13.803 14.942 Atomic orbital electron populations 1.21706 0.96161 1.00822 1.00561 1.21599 0.94471 0.98994 0.99327 1.17886 0.94958 0.91767 0.90513 0.95348 1.22185 0.92372 1.52346 0.94015 0.94312 1.26982 1.10085 0.93672 0.92361 1.70899 1.06384 1.49666 1.31454 0.83074 0.70765 0.77380 0.75872 1.20989 1.20369 1.20100 1.19652 0.98922 0.96942 0.94427 1.19821 0.96977 0.94321 0.96531 1.20733 1.00629 1.01108 0.93700 1.20973 1.04128 1.02032 0.90915 1.19947 0.96248 0.94579 0.96438 1.20757 1.02212 1.00445 0.92448 1.21249 1.06277 0.99957 0.96635 1.19023 0.92389 0.87494 0.93873 1.86317 1.65675 1.39527 1.31886 1.23232 1.00458 1.00099 0.83981 0.93891 0.92447 0.93475 0.96257 0.92548 0.93202 0.90928 0.89750 0.93865 0.84198 0.90039 0.90869 0.90472 0.83998 0.92444 0.91684 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 9.73 71.98 0.70 -4.67 16 2 C -0.11 -5.11 5.23 30.59 0.16 -4.95 16 3 C 0.07 3.48 1.47 -12.29 -0.02 3.47 16 4 H 0.03 1.57 3.95 -2.39 -0.01 1.56 16 5 C -0.57 -33.16 7.72 25.60 0.20 -32.96 16 6 H 0.04 2.31 6.76 -2.91 -0.02 2.29 16 7 C -0.03 -2.02 5.46 84.65 0.46 -1.56 16 8 N -0.94 -58.80 13.61 21.45 0.29 -58.51 16 9 Si 1.11 52.89 29.90 68.60 2.05 54.94 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 C -0.10 -4.49 3.78 -19.77 -0.07 -4.56 16 14 C -0.08 -3.04 5.88 -19.88 -0.12 -3.15 16 15 C -0.11 -3.89 9.18 71.23 0.65 -3.23 16 16 C -0.16 -5.29 9.33 22.28 0.21 -5.09 16 17 C -0.07 -2.16 5.88 -19.88 -0.12 -2.28 16 18 C -0.10 -2.04 10.01 71.23 0.71 -1.33 16 19 C -0.22 -7.41 8.69 22.36 0.19 -7.22 16 20 C 0.12 4.87 6.17 22.51 0.14 5.01 16 21 O -0.32 -13.27 6.63 -92.52 -0.61 -13.88 16 22 C 0.02 0.48 9.81 113.37 1.11 1.59 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.05 1.81 7.40 -2.38 -0.02 1.79 16 26 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.06 2.72 5.88 -2.39 -0.01 2.71 16 28 H 0.26 16.09 6.59 -92.71 -0.61 15.48 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.08 2.53 8.04 -2.38 -0.02 2.52 16 31 H 0.04 1.91 6.48 -2.39 -0.02 1.90 16 32 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 35 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 36 H 0.14 3.82 6.30 -2.91 -0.02 3.80 16 37 H 0.06 1.47 7.65 -2.39 -0.02 1.45 16 38 H 0.06 1.53 7.67 -2.39 -0.02 1.52 16 39 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -69.67 309.60 7.13 -62.54 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 1.18 Total: 15.84 kcal Atomic # 6 Polarization: -65.15 SS G_CDS: 4.21 Total: -60.94 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.29 Total: -58.51 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.61 Total: -13.88 kcal Atomic # 14 Polarization: 52.89 SS G_CDS: 2.05 Total: 54.94 kcal Total: -69.67 7.13 -62.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.325 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds