Wall clock time and date at job start Mon Mar 30 2020 06:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46908 * 110.99799 * 2 1 4 4 C 1.50705 * 109.46678 * 180.02562 * 3 2 1 5 5 C 1.38130 * 120.03540 * 260.01791 * 4 3 2 6 6 C 1.38259 * 120.07342 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.92452 * 180.02562 * 6 5 4 8 8 C 1.38311 * 120.14972 * 359.72130 * 6 5 4 9 9 C 1.38081 * 120.07458 * 0.56223 * 8 6 5 10 10 C 1.38882 * 120.03691 * 80.00116 * 4 3 2 11 11 N 1.39672 * 120.07933 * 0.03900 * 10 4 3 12 12 C 1.46892 * 110.99979 * 116.02362 * 11 10 4 13 13 C 1.46892 * 111.00160 * 239.98149 * 11 10 4 14 14 C 1.50706 * 109.47412 * 169.99594 * 13 11 10 15 15 H 1.07999 * 119.99680 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00205 * 179.97438 * 14 13 11 17 17 N 1.31507 * 120.00329 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47253 * 90.00185 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00250 * 18 16 14 21 21 H 1.48503 * 109.47134 * 330.00111 * 18 16 14 22 22 H 1.09000 * 109.46767 * 59.99809 * 1 2 3 23 23 H 1.08992 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46763 * 300.00115 * 1 2 3 25 25 H 1.00902 * 110.99853 * 123.95102 * 2 1 3 26 26 H 1.09002 * 109.46945 * 60.00439 * 3 2 1 27 27 H 1.08995 * 109.46972 * 299.99529 * 3 2 1 28 28 H 1.07998 * 119.95991 * 359.95838 * 5 4 3 29 29 H 1.08998 * 109.47133 * 89.99707 * 7 6 5 30 30 H 1.08999 * 109.46716 * 210.00350 * 7 6 5 31 31 H 1.09000 * 109.46703 * 329.99532 * 7 6 5 32 32 H 1.08004 * 119.96553 * 180.27613 * 8 6 5 33 33 H 1.08002 * 120.04165 * 179.72174 * 9 8 6 34 34 H 1.08998 * 109.47489 * 60.00612 * 12 11 10 35 35 H 1.09002 * 109.47305 * 180.02562 * 12 11 10 36 36 H 1.08997 * 109.47666 * 300.00007 * 12 11 10 37 37 H 1.08996 * 109.47337 * 289.99580 * 13 11 10 38 38 H 1.08998 * 109.47398 * 49.99673 * 13 11 10 39 39 H 0.97002 * 120.00376 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5020 1.3312 -0.0006 5 6 4.1991 1.5198 1.1768 6 6 5.5812 1.4825 1.1772 7 6 6.3385 1.6880 2.4639 8 6 6.2703 1.2507 0.0006 9 6 5.5797 1.0672 -1.1810 10 6 4.1908 1.1042 -1.1850 11 7 3.4891 0.9136 -2.3775 12 6 3.7776 1.9889 -3.3357 13 6 3.7856 -0.4027 -2.9582 14 6 2.8375 -0.6742 -4.0978 15 1 2.0898 0.0582 -4.3643 16 6 2.9254 -1.8569 -4.8009 17 7 3.8362 -2.7484 -4.4768 18 14 1.7507 -2.1930 -6.2139 19 1 2.3401 -1.6857 -7.4790 20 1 1.5185 -3.6553 -6.3274 21 1 0.4596 -1.5051 -5.9586 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8306 -0.5261 0.7814 26 1 1.6460 1.8948 0.8900 27 1 1.6460 1.8948 -0.8900 28 1 3.6640 1.6968 2.0980 29 1 6.4936 0.7258 2.9519 30 1 7.3038 2.1460 2.2481 31 1 5.7656 2.3412 3.1222 32 1 7.3498 1.2177 0.0051 33 1 6.1185 0.8907 -2.1003 34 1 4.8449 2.0020 -3.5567 35 1 3.2181 1.8162 -4.2551 36 1 3.4837 2.9467 -2.9065 37 1 4.8108 -0.4141 -3.3280 38 1 3.6661 -1.1718 -2.1952 39 1 3.8979 -3.5807 -4.9712 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723162359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:03 Heat of formation + Delta-G solvation = 31.366142 kcal Electronic energy + Delta-G solvation = -18355.566207 eV Core-core repulsion = 15683.934998 eV Total energy + Delta-G solvation = -2671.631209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.54729 -36.15475 -35.58600 -32.61802 -31.41988 -30.75175 -27.26288 -26.66536 -26.23920 -24.09552 -23.14620 -22.20813 -20.73382 -19.51041 -16.53762 -15.78943 -15.69532 -15.07363 -14.68041 -14.38097 -14.18409 -13.53430 -13.44785 -13.33881 -13.25156 -12.89267 -12.29319 -12.11292 -11.93387 -11.65400 -11.57546 -11.38137 -11.11507 -10.92690 -10.82132 -10.62283 -10.49437 -10.40973 -9.87415 -9.15950 -8.43653 -8.35603 -7.89217 -7.82602 -7.24913 -5.93660 -3.93569 1.76795 1.78679 3.36580 3.42713 3.47360 4.07590 4.49543 4.85700 4.97629 5.12643 5.17063 5.30664 5.42261 5.53198 5.56447 5.67934 5.69231 5.77833 5.84671 5.94807 6.02752 6.10034 6.19405 6.28083 6.29067 6.34325 6.55105 6.74826 6.78031 6.92023 7.08338 7.27761 7.41925 7.46958 7.56648 7.84255 7.93184 8.23102 8.28401 8.74265 9.12239 9.68958 11.17391 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.006788 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.164362 B = 4123.768935 C = 4807.457964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.669 5.669 3 C 0.120 3.880 4 C -0.074 4.074 5 C -0.114 4.114 6 C -0.111 4.111 7 C -0.106 4.106 8 C -0.111 4.111 9 C -0.151 4.151 10 C 0.136 3.864 11 N -0.501 5.501 12 C 0.041 3.959 13 C 0.207 3.793 14 C -0.498 4.498 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.900 5.900 18 Si 0.896 3.104 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.273 1.273 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.008 0.992 25 H 0.333 0.667 26 H 0.018 0.982 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.014 0.986 35 H 0.078 0.922 36 H 0.044 0.956 37 H -0.011 1.011 38 H 0.035 0.965 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 8.943 11.614 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.298 5.298 3 C -0.009 4.009 4 C -0.076 4.076 5 C -0.133 4.133 6 C -0.111 4.111 7 C -0.163 4.163 8 C -0.130 4.130 9 C -0.171 4.171 10 C 0.041 3.959 11 N -0.222 5.222 12 C -0.106 4.106 13 C 0.084 3.916 14 C -0.536 4.536 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.724 3.276 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.198 1.198 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.027 0.973 25 H 0.150 0.850 26 H 0.036 0.964 27 H 0.106 0.894 28 H 0.132 0.868 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.032 0.968 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.007 0.993 38 H 0.053 0.947 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.215 8.698 10.944 13.981 hybrid contribution 0.184 -0.204 -0.137 0.307 sum 0.399 8.494 10.807 13.751 Atomic orbital electron populations 1.22123 0.88179 1.01490 0.99558 1.60184 1.06800 1.13449 1.49367 1.20620 0.90246 0.90006 1.00003 1.19706 0.95289 1.00585 0.92010 1.20752 0.93392 1.02184 0.96940 1.19706 0.93724 1.02508 0.95136 1.20695 0.99473 1.01516 0.94631 1.20827 0.99088 1.00891 0.92233 1.21839 0.95522 1.01358 0.98368 1.18968 0.89625 0.94589 0.92717 1.59837 1.55119 1.05190 1.02037 1.22257 0.98392 0.93069 0.96908 1.19703 0.94573 0.82901 0.94421 1.21103 1.16284 1.02505 1.13740 0.91964 1.24948 0.95814 0.96114 0.97705 1.69964 1.34351 1.08556 1.41083 0.86531 0.81430 0.77252 0.82364 1.20930 1.21381 1.19833 0.91563 0.91776 0.97346 0.85042 0.96374 0.89432 0.86845 0.91730 0.92072 0.92130 0.86894 0.86329 0.96785 0.90283 0.93765 0.99331 0.94662 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.70 60.07 0.64 1.17 16 2 N -0.67 -11.44 6.84 -122.41 -0.84 -12.28 16 3 C 0.12 1.96 5.44 -4.97 -0.03 1.93 16 4 C -0.07 -1.30 5.41 -104.42 -0.56 -1.86 16 5 C -0.11 -1.69 9.32 -39.61 -0.37 -2.06 16 6 C -0.11 -1.59 5.88 -104.59 -0.62 -2.21 16 7 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 8 C -0.11 -1.76 9.69 -39.61 -0.38 -2.14 16 9 C -0.15 -2.81 8.66 -39.38 -0.34 -3.15 16 10 C 0.14 2.71 4.66 -83.79 -0.39 2.32 16 11 N -0.50 -11.10 3.86 -180.34 -0.70 -11.79 16 12 C 0.04 0.82 9.20 60.06 0.55 1.37 16 13 C 0.21 5.53 4.30 -4.98 -0.02 5.51 16 14 C -0.50 -14.13 8.46 -34.44 -0.29 -14.42 16 15 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 18 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.01 0.10 8.14 -51.92 -0.42 -0.32 16 25 H 0.33 5.26 8.81 -39.29 -0.35 4.91 16 26 H 0.02 0.26 8.01 -51.93 -0.42 -0.16 16 27 H 0.09 1.56 7.79 -51.93 -0.40 1.16 16 28 H 0.11 1.41 8.04 -52.49 -0.42 0.99 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.12 2.29 7.14 -52.49 -0.37 1.91 16 34 H 0.01 0.27 7.34 -51.93 -0.38 -0.11 16 35 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H -0.01 -0.31 7.47 -51.93 -0.39 -0.70 16 38 H 0.04 1.05 8.06 -51.93 -0.42 0.63 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -30.81 321.82 -8.90 -39.71 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.39 Total: 1.88 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.55 Total: -12.85 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.80 Total: -50.56 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.81 -8.90 -39.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.076 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds