Wall clock time and date at job start Mon Mar 30 2020 06:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46908 * 110.99799 * 2 1 4 4 C 1.50705 * 109.46678 * 180.02562 * 3 2 1 5 5 C 1.38130 * 120.03540 * 260.01791 * 4 3 2 6 6 C 1.38259 * 120.07342 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.92452 * 180.02562 * 6 5 4 8 8 C 1.38311 * 120.14972 * 359.72130 * 6 5 4 9 9 C 1.38081 * 120.07458 * 0.56223 * 8 6 5 10 10 C 1.38882 * 120.03691 * 80.00116 * 4 3 2 11 11 N 1.39672 * 120.07933 * 0.03900 * 10 4 3 12 12 C 1.46892 * 110.99979 * 116.02362 * 11 10 4 13 13 C 1.46892 * 111.00160 * 239.98149 * 11 10 4 14 14 C 1.50706 * 109.47412 * 169.99594 * 13 11 10 15 15 H 1.07999 * 119.99680 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00205 * 179.97438 * 14 13 11 17 17 N 1.31507 * 120.00329 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47253 * 90.00185 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00250 * 18 16 14 21 21 H 1.48503 * 109.47134 * 330.00111 * 18 16 14 22 22 H 1.09000 * 109.46767 * 59.99809 * 1 2 3 23 23 H 1.08992 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46763 * 300.00115 * 1 2 3 25 25 H 1.00902 * 110.99853 * 123.95102 * 2 1 3 26 26 H 1.09002 * 109.46945 * 60.00439 * 3 2 1 27 27 H 1.08995 * 109.46972 * 299.99529 * 3 2 1 28 28 H 1.07998 * 119.95991 * 359.95838 * 5 4 3 29 29 H 1.08998 * 109.47133 * 89.99707 * 7 6 5 30 30 H 1.08999 * 109.46716 * 210.00350 * 7 6 5 31 31 H 1.09000 * 109.46703 * 329.99532 * 7 6 5 32 32 H 1.08004 * 119.96553 * 180.27613 * 8 6 5 33 33 H 1.08002 * 120.04165 * 179.72174 * 9 8 6 34 34 H 1.08998 * 109.47489 * 60.00612 * 12 11 10 35 35 H 1.09002 * 109.47305 * 180.02562 * 12 11 10 36 36 H 1.08997 * 109.47666 * 300.00007 * 12 11 10 37 37 H 1.08996 * 109.47337 * 289.99580 * 13 11 10 38 38 H 1.08998 * 109.47398 * 49.99673 * 13 11 10 39 39 H 0.97002 * 120.00376 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5020 1.3312 -0.0006 5 6 4.1991 1.5198 1.1768 6 6 5.5812 1.4825 1.1772 7 6 6.3385 1.6880 2.4639 8 6 6.2703 1.2507 0.0006 9 6 5.5797 1.0672 -1.1810 10 6 4.1908 1.1042 -1.1850 11 7 3.4891 0.9136 -2.3775 12 6 3.7776 1.9889 -3.3357 13 6 3.7856 -0.4027 -2.9582 14 6 2.8375 -0.6742 -4.0978 15 1 2.0898 0.0582 -4.3643 16 6 2.9254 -1.8569 -4.8009 17 7 3.8362 -2.7484 -4.4768 18 14 1.7507 -2.1930 -6.2139 19 1 2.3401 -1.6857 -7.4790 20 1 1.5185 -3.6553 -6.3274 21 1 0.4596 -1.5051 -5.9586 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8306 -0.5261 0.7814 26 1 1.6460 1.8948 0.8900 27 1 1.6460 1.8948 -0.8900 28 1 3.6640 1.6968 2.0980 29 1 6.4936 0.7258 2.9519 30 1 7.3038 2.1460 2.2481 31 1 5.7656 2.3412 3.1222 32 1 7.3498 1.2177 0.0051 33 1 6.1185 0.8907 -2.1003 34 1 4.8449 2.0020 -3.5567 35 1 3.2181 1.8162 -4.2551 36 1 3.4837 2.9467 -2.9065 37 1 4.8108 -0.4141 -3.3280 38 1 3.6661 -1.1718 -2.1952 39 1 3.8979 -3.5807 -4.9712 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723162359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:03 Heat of formation + Delta-G solvation = 11.269136 kcal Electronic energy + Delta-G solvation = -18356.437679 eV Core-core repulsion = 15683.934998 eV Total energy + Delta-G solvation = -2672.502681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93053 -37.74827 -36.84468 -34.71321 -32.74425 -32.06436 -29.29190 -27.90849 -27.59949 -25.80280 -24.41693 -23.83902 -22.26531 -20.87597 -18.57365 -17.40951 -17.06270 -16.63494 -16.37046 -15.74291 -15.62657 -15.10612 -14.83894 -14.57851 -14.53152 -14.35130 -13.93971 -13.45402 -13.26712 -13.14800 -12.86849 -12.78301 -12.69728 -12.65783 -12.40351 -12.30420 -12.05677 -11.87869 -11.79305 -11.27740 -10.58741 -9.73148 -9.20610 -9.08072 -9.03909 -8.15909 -6.25134 0.45442 0.48023 1.41114 1.43214 1.54809 2.42699 2.78012 3.16490 3.35357 3.65206 3.96208 3.99093 4.07806 4.36631 4.42787 4.52443 4.56996 4.59318 4.64809 4.72076 4.82122 4.86681 4.91107 4.95469 5.04274 5.11341 5.14971 5.20037 5.29524 5.36973 5.49745 5.67757 5.71122 5.81209 6.09148 6.16061 6.26415 6.31908 6.63968 6.88899 6.93708 7.43229 8.95405 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.006788 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.164362 B = 4123.768935 C = 4807.457964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.699 5.699 3 C 0.126 3.874 4 C -0.081 4.081 5 C -0.109 4.109 6 C -0.100 4.100 7 C -0.104 4.104 8 C -0.116 4.116 9 C -0.170 4.170 10 C 0.095 3.905 11 N -0.499 5.499 12 C 0.045 3.955 13 C 0.234 3.766 14 C -0.512 4.512 15 H 0.062 0.938 16 C 0.001 3.999 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.265 1.265 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.036 0.964 25 H 0.338 0.662 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.148 0.852 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.011 0.989 35 H 0.064 0.936 36 H 0.071 0.929 37 H -0.043 1.043 38 H -0.005 1.005 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 10.047 13.463 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.330 5.330 3 C -0.002 4.002 4 C -0.082 4.082 5 C -0.127 4.127 6 C -0.100 4.100 7 C -0.161 4.161 8 C -0.134 4.134 9 C -0.191 4.191 10 C 0.000 4.000 11 N -0.220 5.220 12 C -0.102 4.102 13 C 0.109 3.891 14 C -0.550 4.550 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.578 5.578 18 Si 0.794 3.206 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.189 1.189 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.055 0.945 25 H 0.156 0.844 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.166 0.834 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.153 0.847 33 H 0.114 0.886 34 H 0.029 0.971 35 H 0.083 0.917 36 H 0.090 0.910 37 H -0.026 1.026 38 H 0.014 0.986 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.351 9.830 12.809 16.150 hybrid contribution 0.433 -0.507 -0.591 0.891 sum 0.082 9.323 12.218 15.369 Atomic orbital electron populations 1.22089 0.86859 1.01816 1.00176 1.60130 1.08369 1.14241 1.50275 1.20537 0.89577 0.89778 1.00347 1.19911 0.96021 1.00363 0.91891 1.21122 0.93826 1.00670 0.97118 1.20203 0.93922 0.99717 0.96157 1.20776 0.99892 1.02740 0.92671 1.21103 1.00318 1.00308 0.91710 1.21775 0.95320 1.03015 0.98955 1.19130 0.90287 0.98035 0.92561 1.59669 1.55835 1.03453 1.03027 1.22234 0.98016 0.93679 0.96286 1.19172 0.92446 0.84679 0.92831 1.21388 1.16468 1.02786 1.14401 0.91992 1.25887 0.97505 0.95753 1.00512 1.70106 1.36101 1.09078 1.42497 0.85384 0.79191 0.77182 0.78838 1.19802 1.20886 1.18932 0.92926 0.91644 0.94535 0.84401 0.93246 0.91617 0.83424 0.90598 0.90728 0.90047 0.84671 0.88564 0.97074 0.91680 0.91039 1.02571 0.98636 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.12 10.70 127.69 1.37 2.49 16 2 N -0.70 -23.66 6.84 -541.20 -3.70 -27.36 16 3 C 0.13 3.98 5.44 85.56 0.47 4.45 16 4 C -0.08 -2.74 5.41 -19.73 -0.11 -2.84 16 5 C -0.11 -2.93 9.32 22.25 0.21 -2.72 16 6 C -0.10 -2.59 5.88 -19.84 -0.12 -2.71 16 7 C -0.10 -1.77 10.01 71.24 0.71 -1.06 16 8 C -0.12 -3.53 9.69 22.25 0.22 -3.31 16 9 C -0.17 -6.58 8.66 22.40 0.19 -6.39 16 10 C 0.09 3.86 4.66 38.21 0.18 4.04 16 11 N -0.50 -23.12 3.86 -724.48 -2.80 -25.92 16 12 C 0.04 1.86 9.20 127.69 1.17 3.03 16 13 C 0.23 13.22 4.30 85.56 0.37 13.58 16 14 C -0.51 -30.14 8.46 25.60 0.22 -29.92 16 15 H 0.06 3.57 7.12 -2.91 -0.02 3.55 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.94 -58.51 13.29 21.44 0.28 -58.23 16 18 Si 0.97 45.72 29.54 68.60 2.03 47.74 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.34 10.45 8.81 -89.69 -0.79 9.66 16 26 H 0.05 1.24 8.01 -2.39 -0.02 1.22 16 27 H 0.07 2.34 7.79 -2.39 -0.02 2.32 16 28 H 0.15 2.97 8.04 -2.91 -0.02 2.95 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 31 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 32 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.10 4.02 7.14 -2.91 -0.02 4.00 16 34 H 0.01 0.45 7.34 -2.39 -0.02 0.43 16 35 H 0.06 2.82 6.76 -2.39 -0.02 2.81 16 36 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 37 H -0.04 -2.66 7.47 -2.39 -0.02 -2.68 16 38 H 0.00 -0.29 8.06 -2.39 -0.02 -0.31 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -69.36 321.82 1.37 -67.98 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.23 Total: 16.63 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 5.34 Total: -20.85 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -6.22 Total: -111.51 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -69.36 1.37 -67.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.252 kcal (2) G-P(sol) polarization free energy of solvation -69.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds