Wall clock time and date at job start Mon Mar 30 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47071 * 2 1 4 4 H 1.08998 * 109.47330 * 305.00033 * 3 2 1 5 5 C 1.50700 * 109.47073 * 185.00110 * 3 2 1 6 6 H 1.08004 * 119.99949 * 239.99697 * 5 3 2 7 7 C 1.37873 * 120.00208 * 59.99888 * 5 3 2 8 8 N 1.31514 * 120.00090 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99969 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47122 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46865 * 120.00066 * 9 7 5 12 12 H 1.48494 * 109.47017 * 239.99944 * 9 7 5 13 13 N 1.46496 * 109.47211 * 65.00042 * 3 2 1 14 14 C 1.40005 * 120.00081 * 274.99783 * 13 3 2 15 15 C 1.38855 * 120.00336 * 179.97438 * 14 13 3 16 16 C 1.38095 * 120.00207 * 179.97438 * 15 14 13 17 17 C 1.38856 * 119.99698 * 0.28314 * 16 15 14 18 18 N 1.39999 * 119.99785 * 179.69732 * 17 16 15 19 19 C 1.46506 * 120.00315 * 0.02562 * 18 17 16 20 20 C 1.46507 * 120.00019 * 179.97438 * 18 17 16 21 21 C 1.38859 * 120.00115 * 359.44053 * 17 16 15 22 22 C 1.38095 * 119.99956 * 0.55469 * 21 17 16 23 23 H 1.08994 * 109.47300 * 300.00100 * 1 2 3 24 24 H 1.09005 * 109.47456 * 60.00203 * 1 2 3 25 25 H 1.09003 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47267 * 239.99917 * 2 1 3 27 27 H 1.09003 * 109.46786 * 120.00127 * 2 1 3 28 28 H 0.96996 * 119.99991 * 180.02562 * 8 7 5 29 29 H 0.97003 * 120.00600 * 95.00139 * 13 3 2 30 30 H 1.08000 * 119.99836 * 359.95979 * 15 14 13 31 31 H 1.08002 * 119.99797 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47201 * 89.99639 * 19 18 17 33 33 H 1.09001 * 109.47128 * 210.00032 * 19 18 17 34 34 H 1.09005 * 109.46524 * 329.99363 * 19 18 17 35 35 H 1.09001 * 109.46572 * 90.00120 * 20 18 17 36 36 H 1.08993 * 109.47211 * 209.99939 * 20 18 17 37 37 H 1.09000 * 109.46858 * 330.00369 * 20 18 17 38 38 H 1.07999 * 120.00035 * 180.28113 * 21 17 16 39 39 H 1.08001 * 119.99821 * 179.69980 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5988 1.5441 -0.1930 11 1 6.4961 -0.5191 -1.4626 12 1 6.4000 1.6156 -2.6090 13 7 1.6524 2.0974 1.2518 14 6 0.3879 2.6864 1.3714 15 6 0.0203 3.3067 2.5580 16 6 -1.2268 3.8881 2.6758 17 6 -2.1153 3.8471 1.6096 18 7 -3.3819 4.4310 1.7311 19 6 -3.7697 5.0856 2.9831 20 6 -4.3193 4.3883 0.6060 21 6 -1.7456 3.2318 0.4209 22 6 -0.4985 2.6505 0.3031 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8293 -0.0610 -2.9499 29 1 2.2719 2.1232 1.9978 30 1 0.7096 3.3344 3.3890 31 1 -1.5127 4.3702 3.5989 32 1 -3.4890 6.1381 2.9448 33 1 -4.8481 5.0018 3.1180 34 1 -3.2606 4.6038 3.8178 35 1 -4.9287 3.4872 0.6749 36 1 -4.9642 5.2664 0.6368 37 1 -3.7621 4.3793 -0.3309 38 1 -2.4350 3.2039 -0.4099 39 1 -0.2128 2.1677 -0.6198 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036335607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:43 Heat of formation + Delta-G solvation = 41.218084 kcal Electronic energy + Delta-G solvation = -18152.009521 eV Core-core repulsion = 15480.805524 eV Total energy + Delta-G solvation = -2671.203997 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.22095 -36.95173 -34.79275 -32.36565 -31.24586 -30.23760 -28.49074 -27.87648 -26.22482 -23.77512 -22.70806 -22.09703 -20.40220 -19.06621 -17.39522 -16.60702 -15.44577 -15.38303 -14.80938 -14.74149 -14.24282 -13.82542 -13.46033 -13.08302 -12.75910 -12.57843 -12.53384 -12.02808 -11.85744 -11.71969 -11.59564 -11.49047 -11.24464 -10.89865 -10.77292 -10.35720 -10.14840 -10.05268 -9.77845 -9.43946 -8.94269 -8.46443 -8.23100 -7.82158 -6.12060 -5.84865 -4.18517 2.06445 2.49233 3.24593 3.32797 3.36312 3.51039 4.31676 4.62417 4.78119 5.15502 5.20131 5.21249 5.35861 5.49583 5.55825 5.72091 5.77329 5.80414 6.00892 6.13183 6.28098 6.30064 6.40347 6.57672 6.68568 6.81604 6.82552 7.02226 7.05687 7.21835 7.31156 7.38625 7.58994 7.70491 7.73261 7.90617 8.01808 8.18204 8.52836 8.85361 9.06149 9.48697 10.94195 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041203 B = 0.004902 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.393642 B = 5710.923217 C = 5963.041034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.276 3.724 4 H 0.037 0.963 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.734 5.734 14 C 0.194 3.806 15 C -0.178 4.178 16 C -0.146 4.146 17 C 0.130 3.870 18 N -0.651 5.651 19 C 0.104 3.896 20 C 0.103 3.897 21 C -0.145 4.145 22 C -0.155 4.155 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.026 0.974 26 H 0.097 0.903 27 H 0.033 0.967 28 H 0.263 0.737 29 H 0.386 0.614 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.798 5.800 6.496 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.173 3.827 4 H 0.055 0.945 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.087 3.913 15 C -0.202 4.202 16 C -0.169 4.169 17 C 0.032 3.968 18 N -0.369 5.369 19 C -0.040 4.040 20 C -0.041 4.041 21 C -0.168 4.168 22 C -0.178 4.178 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.115 0.885 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.219 0.781 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.847 5.660 6.115 14.484 hybrid contribution 1.161 -0.062 0.143 1.172 sum -10.686 5.599 6.258 13.590 Atomic orbital electron populations 1.22194 0.99048 0.98945 1.00603 1.22024 0.92178 1.00639 1.02311 1.18632 0.94183 0.88568 0.81340 0.94539 1.21302 0.91088 1.38153 1.05963 0.92180 1.24872 0.98496 0.94897 0.95464 1.69882 1.34955 1.38176 1.09443 0.86433 0.85125 0.77720 0.78078 1.19791 1.20937 1.20921 1.45389 1.12267 1.60614 1.17623 1.17877 0.87103 0.93117 0.93231 1.20273 0.97263 1.05444 0.97185 1.20233 0.94048 1.05138 0.97474 1.17461 0.85566 0.98936 0.94861 1.45991 1.13433 1.63846 1.13601 1.21420 0.99412 0.96337 0.86841 1.21438 0.92567 1.00119 0.89989 1.20401 0.97368 1.02805 0.96197 1.20892 0.93557 1.03953 0.99433 0.93092 0.93542 0.95472 0.88513 0.94855 0.92736 0.78132 0.87154 0.87211 0.94484 0.92619 0.91836 0.94404 0.92613 0.91661 0.86999 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.22 37.16 0.31 -2.80 16 2 C -0.13 -3.13 5.45 -26.74 -0.15 -3.27 16 3 C 0.28 6.74 2.20 -69.09 -0.15 6.59 16 4 H 0.04 0.98 6.48 -51.93 -0.34 0.65 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -24.41 11.29 55.43 0.63 -23.78 16 9 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.73 -15.63 5.19 -53.23 -0.28 -15.91 16 14 C 0.19 3.83 5.49 -83.66 -0.46 3.37 16 15 C -0.18 -3.10 9.89 -39.41 -0.39 -3.49 16 16 C -0.15 -2.36 9.20 -39.41 -0.36 -2.72 16 17 C 0.13 2.11 6.56 -83.67 -0.55 1.56 16 18 N -0.65 -8.76 3.42 -187.47 -0.64 -9.40 16 19 C 0.10 1.09 10.19 59.85 0.61 1.70 16 20 C 0.10 1.12 10.20 59.85 0.61 1.74 16 21 C -0.15 -2.49 9.21 -39.40 -0.36 -2.86 16 22 C -0.16 -3.01 6.72 -39.40 -0.26 -3.27 16 23 H 0.05 1.04 5.39 -51.93 -0.28 0.76 16 24 H 0.05 0.94 6.35 -51.93 -0.33 0.61 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.10 2.53 5.95 -51.93 -0.31 2.22 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.39 7.78 8.55 -40.82 -0.35 7.43 16 30 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.11 1.51 6.14 -52.49 -0.32 1.19 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 34 H 0.06 0.66 6.20 -51.93 -0.32 0.33 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.49 8.07 -51.93 -0.42 0.08 16 37 H 0.06 0.73 6.19 -51.93 -0.32 0.41 16 38 H 0.11 1.71 6.13 -52.49 -0.32 1.38 16 39 H 0.13 2.75 4.00 -52.49 -0.21 2.54 16 LS Contribution 302.31 15.07 4.56 4.56 Total: -1.00 -28.03 302.31 -7.91 -35.94 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.60 Total: 8.97 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.55 Total: -16.10 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.29 Total: -49.10 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.03 -7.91 -35.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036335607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.158 kcal (2) G-P(sol) polarization free energy of solvation -28.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds