Wall clock time and date at job start Mon Mar 30 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47071 * 2 1 4 4 H 1.08998 * 109.47330 * 305.00033 * 3 2 1 5 5 C 1.50700 * 109.47073 * 185.00110 * 3 2 1 6 6 H 1.08004 * 119.99949 * 239.99697 * 5 3 2 7 7 C 1.37873 * 120.00208 * 59.99888 * 5 3 2 8 8 N 1.31514 * 120.00090 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99969 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47122 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46865 * 120.00066 * 9 7 5 12 12 H 1.48494 * 109.47017 * 239.99944 * 9 7 5 13 13 N 1.46496 * 109.47211 * 65.00042 * 3 2 1 14 14 C 1.40005 * 120.00081 * 274.99783 * 13 3 2 15 15 C 1.38855 * 120.00336 * 179.97438 * 14 13 3 16 16 C 1.38095 * 120.00207 * 179.97438 * 15 14 13 17 17 C 1.38856 * 119.99698 * 0.28314 * 16 15 14 18 18 N 1.39999 * 119.99785 * 179.69732 * 17 16 15 19 19 C 1.46506 * 120.00315 * 0.02562 * 18 17 16 20 20 C 1.46507 * 120.00019 * 179.97438 * 18 17 16 21 21 C 1.38859 * 120.00115 * 359.44053 * 17 16 15 22 22 C 1.38095 * 119.99956 * 0.55469 * 21 17 16 23 23 H 1.08994 * 109.47300 * 300.00100 * 1 2 3 24 24 H 1.09005 * 109.47456 * 60.00203 * 1 2 3 25 25 H 1.09003 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47267 * 239.99917 * 2 1 3 27 27 H 1.09003 * 109.46786 * 120.00127 * 2 1 3 28 28 H 0.96996 * 119.99991 * 180.02562 * 8 7 5 29 29 H 0.97003 * 120.00600 * 95.00139 * 13 3 2 30 30 H 1.08000 * 119.99836 * 359.95979 * 15 14 13 31 31 H 1.08002 * 119.99797 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47201 * 89.99639 * 19 18 17 33 33 H 1.09001 * 109.47128 * 210.00032 * 19 18 17 34 34 H 1.09005 * 109.46524 * 329.99363 * 19 18 17 35 35 H 1.09001 * 109.46572 * 90.00120 * 20 18 17 36 36 H 1.08993 * 109.47211 * 209.99939 * 20 18 17 37 37 H 1.09000 * 109.46858 * 330.00369 * 20 18 17 38 38 H 1.07999 * 120.00035 * 180.28113 * 21 17 16 39 39 H 1.08001 * 119.99821 * 179.69980 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5988 1.5441 -0.1930 11 1 6.4961 -0.5191 -1.4626 12 1 6.4000 1.6156 -2.6090 13 7 1.6524 2.0974 1.2518 14 6 0.3879 2.6864 1.3714 15 6 0.0203 3.3067 2.5580 16 6 -1.2268 3.8881 2.6758 17 6 -2.1153 3.8471 1.6096 18 7 -3.3819 4.4310 1.7311 19 6 -3.7697 5.0856 2.9831 20 6 -4.3193 4.3883 0.6060 21 6 -1.7456 3.2318 0.4209 22 6 -0.4985 2.6505 0.3031 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8293 -0.0610 -2.9499 29 1 2.2719 2.1232 1.9978 30 1 0.7096 3.3344 3.3890 31 1 -1.5127 4.3702 3.5989 32 1 -3.4890 6.1381 2.9448 33 1 -4.8481 5.0018 3.1180 34 1 -3.2606 4.6038 3.8178 35 1 -4.9287 3.4872 0.6749 36 1 -4.9642 5.2664 0.6368 37 1 -3.7621 4.3793 -0.3309 38 1 -2.4350 3.2039 -0.4099 39 1 -0.2128 2.1677 -0.6198 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036335607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:43 Heat of formation + Delta-G solvation = 25.591958 kcal Electronic energy + Delta-G solvation = -18152.687121 eV Core-core repulsion = 15480.805524 eV Total energy + Delta-G solvation = -2671.881596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.58457 -38.37595 -36.28028 -34.18522 -32.85763 -31.63818 -30.03067 -28.82317 -27.90907 -25.21338 -24.32997 -23.53853 -21.84466 -20.68169 -19.01638 -18.10159 -17.04591 -16.93741 -16.24546 -15.80629 -15.73499 -15.33326 -15.01398 -14.52298 -14.16947 -14.11158 -13.49755 -13.41913 -13.26727 -13.13184 -13.08833 -12.77438 -12.70778 -12.69261 -12.49650 -12.04241 -11.88948 -11.65591 -11.39070 -11.08421 -10.84757 -10.43093 -9.61230 -9.16013 -8.15020 -7.24783 -6.28841 0.69401 1.11349 1.41510 1.43461 1.54539 2.39814 2.50817 3.11941 3.18367 3.24730 4.09477 4.20675 4.37451 4.47326 4.53776 4.60103 4.63572 4.72352 4.77439 4.81816 4.92783 4.95491 4.98380 4.99484 5.10912 5.29862 5.34097 5.43016 5.46897 5.54927 5.64418 5.77965 5.79176 5.92587 6.06591 6.22695 6.63772 6.64542 6.79552 7.02498 7.38320 7.47601 8.90453 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041203 B = 0.004902 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.393642 B = 5710.923217 C = 5963.041034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.287 3.713 4 H 0.004 0.996 5 C -0.546 4.546 6 H 0.058 0.942 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.281 1.281 13 N -0.740 5.740 14 C 0.163 3.837 15 C -0.171 4.171 16 C -0.149 4.149 17 C 0.138 3.862 18 N -0.655 5.655 19 C 0.097 3.903 20 C 0.096 3.904 21 C -0.156 4.156 22 C -0.168 4.168 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.126 0.874 31 H 0.139 0.861 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.126 0.874 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 6.876 7.921 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.183 3.817 4 H 0.022 0.978 5 C -0.584 4.584 6 H 0.076 0.924 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.788 3.212 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.207 1.207 13 N -0.368 5.368 14 C 0.058 3.942 15 C -0.195 4.195 16 C -0.172 4.172 17 C 0.038 3.962 18 N -0.372 5.372 19 C -0.046 4.046 20 C -0.047 4.047 21 C -0.178 4.178 22 C -0.191 4.191 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.222 0.778 30 H 0.144 0.856 31 H 0.156 0.844 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.144 0.856 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.198 6.772 7.566 16.652 hybrid contribution 1.383 -0.288 -0.258 1.436 sum -11.815 6.483 7.309 15.331 Atomic orbital electron populations 1.22023 0.96730 0.99860 1.00656 1.21855 0.94213 0.99843 1.00499 1.18242 0.92971 0.88694 0.81815 0.97843 1.21641 0.92429 1.38234 1.06137 0.92404 1.25646 1.02761 0.94545 0.95159 1.70008 1.36602 1.38669 1.09826 0.85441 0.79961 0.77775 0.78018 1.19269 1.20445 1.20676 1.45061 1.13339 1.61860 1.16567 1.18065 0.86661 0.94917 0.94529 1.20504 0.98112 1.04226 0.96622 1.20547 0.93336 1.04705 0.98590 1.17649 0.86802 0.97517 0.94199 1.46314 1.12550 1.63046 1.15277 1.21637 1.01026 0.96463 0.85479 1.21613 0.92413 1.01706 0.88985 1.20533 0.96831 1.03026 0.97437 1.20793 0.94726 1.04934 0.98661 0.92739 0.93809 0.93941 0.91265 0.95430 0.92663 0.77765 0.85565 0.84369 0.93633 0.90261 0.91568 0.93683 0.90074 0.92276 0.85604 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 8.22 71.98 0.59 -5.10 16 2 C -0.12 -6.10 5.45 30.59 0.17 -5.93 16 3 C 0.29 14.60 2.20 44.24 0.10 14.69 16 4 H 0.00 0.22 6.48 -2.39 -0.02 0.20 16 5 C -0.55 -29.80 8.73 25.60 0.22 -29.57 16 6 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -51.66 11.29 21.45 0.24 -51.42 16 9 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 N -0.74 -32.36 5.19 -322.33 -1.67 -34.03 16 14 C 0.16 6.48 5.49 38.13 0.21 6.69 16 15 C -0.17 -5.75 9.89 22.38 0.22 -5.53 16 16 C -0.15 -4.43 9.20 22.38 0.21 -4.22 16 17 C 0.14 4.19 6.56 38.13 0.25 4.44 16 18 N -0.66 -15.55 3.42 -747.02 -2.55 -18.11 16 19 C 0.10 1.65 10.19 127.77 1.30 2.96 16 20 C 0.10 1.82 10.20 127.77 1.30 3.12 16 21 C -0.16 -5.23 9.21 22.38 0.21 -5.03 16 22 C -0.17 -6.63 6.72 22.39 0.15 -6.48 16 23 H 0.05 2.24 5.39 -2.39 -0.01 2.23 16 24 H 0.04 1.83 6.35 -2.38 -0.02 1.82 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 3.77 5.95 -2.38 -0.01 3.75 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.39 16.00 8.55 -92.71 -0.79 15.21 16 30 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.14 3.28 6.14 -2.91 -0.02 3.26 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.01 8.07 -2.39 -0.02 0.99 16 34 H 0.07 1.11 6.20 -2.38 -0.01 1.09 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.14 8.07 -2.39 -0.02 1.12 16 37 H 0.06 1.19 6.19 -2.39 -0.01 1.18 16 38 H 0.13 3.75 6.13 -2.91 -0.02 3.73 16 39 H 0.11 4.80 4.00 -2.91 -0.01 4.79 16 Total: -1.00 -60.81 302.31 3.68 -57.13 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.26 Total: 29.80 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 5.38 Total: -28.49 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -3.98 Total: -103.55 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -60.81 3.68 -57.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036335607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.725 kcal (2) G-P(sol) polarization free energy of solvation -60.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds