Wall clock time and date at job start Mon Mar 30 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38227 * 119.61495 * 2 1 4 4 C 1.38626 * 119.15863 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.79141 * 180.02562 * 4 3 2 6 6 C 1.38676 * 118.42366 * 0.02562 * 4 3 2 7 7 C 1.50694 * 120.41859 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.46775 * 196.82473 * 7 6 4 9 9 C 1.52997 * 109.47442 * 76.82617 * 7 6 4 10 10 N 1.46899 * 109.47283 * 316.82012 * 7 6 4 11 11 C 1.46895 * 111.00170 * 224.55632 * 10 7 6 12 12 C 1.50703 * 109.47155 * 180.02562 * 11 10 7 13 13 H 1.07995 * 120.00069 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00126 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00068 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99889 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47203 * 90.00381 * 16 14 12 18 18 H 1.48500 * 109.47086 * 210.00113 * 16 14 12 19 19 H 1.48494 * 109.47173 * 330.00023 * 16 14 12 20 20 C 1.38180 * 119.16029 * 0.26859 * 6 4 3 21 21 C 1.50692 * 119.61979 * 179.70640 * 20 6 4 22 22 N 1.31848 * 119.61805 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47225 * 89.99650 * 1 2 3 24 24 H 1.09007 * 109.47257 * 209.99782 * 1 2 3 25 25 H 1.09003 * 109.47234 * 329.99354 * 1 2 3 26 26 H 1.07999 * 120.42274 * 0.05309 * 3 2 1 27 27 H 1.09000 * 109.47402 * 266.32673 * 5 4 3 28 28 H 1.09005 * 109.46576 * 26.32311 * 5 4 3 29 29 H 1.09000 * 109.47267 * 146.31582 * 5 4 3 30 30 H 1.08999 * 109.47095 * 305.00304 * 9 7 6 31 31 H 1.09003 * 109.47325 * 64.99697 * 9 7 6 32 32 H 1.08997 * 109.47590 * 185.00009 * 9 7 6 33 33 H 1.00906 * 110.99298 * 100.60590 * 10 7 6 34 34 H 1.08997 * 109.47613 * 300.00680 * 11 10 7 35 35 H 1.09001 * 109.47090 * 60.00433 * 11 10 7 36 36 H 0.97002 * 119.99989 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47184 * 84.24688 * 21 20 6 38 38 H 1.08999 * 109.47643 * 204.25415 * 21 20 6 39 39 H 1.09004 * 109.46961 * 324.25310 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 -0.0005 5 6 4.3580 2.4791 0.0000 6 6 4.2266 -0.0342 -0.0016 7 6 5.7322 -0.0986 -0.0028 8 1 6.0528 -1.0969 -0.3010 9 6 6.2569 0.2074 1.4014 10 7 6.2639 0.8899 -0.9505 11 6 7.3362 0.3098 -1.7700 12 6 7.8560 1.3512 -2.7273 13 1 7.4325 2.3446 -2.7267 14 6 8.8723 1.0356 -3.6039 15 7 9.3263 1.9445 -4.4390 16 14 9.6054 -0.6826 -3.6045 17 1 8.8545 -1.5409 -4.5555 18 1 11.0297 -0.6129 -4.0191 19 1 9.5151 -1.2597 -2.2393 20 6 3.4766 -1.1947 -0.0078 21 6 4.1726 -2.5312 -0.0157 22 7 2.1586 -1.1462 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6507 2.1373 0.0009 27 1 4.6024 2.7563 -1.0254 28 1 3.7591 3.2672 0.4565 29 1 5.2778 2.3457 0.5695 30 1 5.8633 1.1674 1.7352 31 1 5.9353 -0.5757 2.0881 32 1 7.3460 0.2484 1.3814 33 1 6.5839 1.7168 -0.4688 34 1 8.1469 -0.0256 -1.1232 35 1 6.9455 -0.5383 -2.3322 36 1 10.0416 1.7226 -5.0555 37 1 4.4324 -2.8117 1.0051 38 1 3.5093 -3.2839 -0.4417 39 1 5.0799 -2.4648 -0.6162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037240331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:56 Heat of formation + Delta-G solvation = 25.733625 kcal Electronic energy + Delta-G solvation = -18293.641728 eV Core-core repulsion = 15621.766275 eV Total energy + Delta-G solvation = -2671.875453 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45099 -36.89693 -33.79570 -33.53800 -32.23259 -30.13735 -28.84335 -27.57490 -26.53956 -26.22250 -22.48164 -21.25742 -20.90386 -20.13117 -16.85483 -16.73501 -15.42861 -14.94078 -14.65128 -14.47261 -13.99289 -13.84754 -13.42424 -13.16761 -13.07854 -12.81863 -12.58083 -12.39886 -12.07831 -12.03522 -12.00026 -11.81323 -11.60147 -11.52372 -11.43170 -10.81003 -10.58056 -10.20715 -9.91511 -9.36674 -9.16290 -8.99359 -8.62294 -8.34058 -7.52129 -6.08912 -4.07057 1.36106 1.58861 3.26657 3.34002 3.35055 3.94014 4.38262 4.39170 4.79948 4.91351 4.96916 5.15705 5.22970 5.26938 5.36046 5.49487 5.55831 5.58675 5.60091 5.67607 5.72398 5.74409 5.82077 5.93545 5.99209 6.09786 6.17717 6.20246 6.26564 6.46600 6.54931 6.68781 6.78268 6.98073 7.04773 7.56814 7.84281 8.26153 8.27357 8.60445 8.98458 9.53021 11.04302 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027450 B = 0.005790 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.805172 B = 4835.011442 C = 5103.115824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.118 3.882 3 C -0.186 4.186 4 C -0.007 4.007 5 C -0.112 4.112 6 C -0.113 4.113 7 C 0.115 3.885 8 H 0.081 0.919 9 C -0.172 4.172 10 N -0.672 5.672 11 C 0.163 3.837 12 C -0.515 4.515 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.130 3.870 21 C -0.106 4.106 22 N -0.494 5.494 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.339 0.661 34 H -0.015 1.015 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 -3.944 12.013 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.020 4.020 3 C -0.206 4.206 4 C -0.015 4.015 5 C -0.168 4.168 6 C -0.116 4.116 7 C 0.004 3.996 8 H 0.099 0.901 9 C -0.230 4.230 10 N -0.304 5.304 11 C 0.035 3.965 12 C -0.554 4.554 13 H 0.097 0.903 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.007 4.007 21 C -0.163 4.163 22 N -0.205 5.205 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.145 0.855 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.159 0.841 34 H 0.003 0.997 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.092 -4.796 11.389 18.003 hybrid contribution 1.631 -0.120 0.382 1.680 sum -11.460 -4.916 11.770 17.148 Atomic orbital electron populations 1.20633 0.89400 1.02821 1.02704 1.21079 0.96493 0.88403 0.96011 1.21759 0.94295 0.98864 1.05681 1.20108 0.93059 0.95689 0.92629 1.20980 0.99017 0.92482 1.04321 1.20637 0.96903 0.92745 1.01340 1.20474 0.89568 0.97986 0.91600 0.90103 1.22441 1.01327 1.01992 0.97273 1.60774 1.38984 1.06774 1.23854 1.20082 0.87705 0.96218 0.92456 1.21025 1.17872 0.98980 1.17491 0.90318 1.24896 0.96338 0.96910 0.95106 1.69896 1.28154 1.33774 1.22043 0.86842 0.78599 0.85381 0.78806 1.20154 1.21219 1.19237 1.20974 0.89098 0.95178 0.95497 1.20749 1.00148 0.92789 1.02586 1.67277 1.09217 1.29403 1.14643 0.90799 0.90943 0.91139 0.85461 0.88696 0.92750 0.90864 0.92025 0.92579 0.91970 0.84144 0.99731 0.96095 0.92635 0.90804 0.90799 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.17 36.00 0.37 -0.66 16 2 C 0.12 1.70 6.78 -82.59 -0.56 1.14 16 3 C -0.19 -2.62 9.44 -39.44 -0.37 -2.99 16 4 C -0.01 -0.11 5.80 -104.32 -0.61 -0.71 16 5 C -0.11 -1.56 8.18 36.01 0.29 -1.27 16 6 C -0.11 -1.85 4.95 -104.48 -0.52 -2.37 16 7 C 0.11 1.89 2.50 -68.87 -0.17 1.72 16 8 H 0.08 1.35 5.10 -51.92 -0.26 1.09 16 9 C -0.17 -2.36 8.89 37.16 0.33 -2.03 16 10 N -0.67 -13.18 4.62 -109.23 -0.50 -13.69 16 11 C 0.16 3.84 4.22 -4.98 -0.02 3.82 16 12 C -0.52 -14.42 9.87 -34.44 -0.34 -14.76 16 13 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 16 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 20 C 0.13 2.08 6.78 -82.59 -0.56 1.52 16 21 C -0.11 -1.40 9.54 36.00 0.34 -1.06 16 22 N -0.49 -7.99 10.19 -5.74 -0.06 -8.05 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.09 1.51 7.83 -51.93 -0.41 1.11 16 28 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.07 1.00 3.87 -51.93 -0.20 0.80 16 30 H 0.06 0.79 6.07 -51.93 -0.32 0.48 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.34 6.32 6.23 -39.29 -0.24 6.07 16 34 H -0.01 -0.35 7.20 -51.93 -0.37 -0.72 16 35 H 0.02 0.51 7.54 -51.93 -0.39 0.12 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.06 6.18 -51.93 -0.32 0.74 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -31.34 309.05 -7.62 -38.96 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.91 Total: 3.83 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.91 Total: -15.77 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.21 Total: -48.36 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.34 -7.62 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.692 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds