Wall clock time and date at job start Mon Mar 30 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38227 * 119.61495 * 2 1 4 4 C 1.38626 * 119.15863 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.79141 * 180.02562 * 4 3 2 6 6 C 1.38676 * 118.42366 * 0.02562 * 4 3 2 7 7 C 1.50694 * 120.41859 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.46775 * 196.82473 * 7 6 4 9 9 C 1.52997 * 109.47442 * 76.82617 * 7 6 4 10 10 N 1.46899 * 109.47283 * 316.82012 * 7 6 4 11 11 C 1.46895 * 111.00170 * 224.55632 * 10 7 6 12 12 C 1.50703 * 109.47155 * 180.02562 * 11 10 7 13 13 H 1.07995 * 120.00069 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00126 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00068 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99889 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47203 * 90.00381 * 16 14 12 18 18 H 1.48500 * 109.47086 * 210.00113 * 16 14 12 19 19 H 1.48494 * 109.47173 * 330.00023 * 16 14 12 20 20 C 1.38180 * 119.16029 * 0.26859 * 6 4 3 21 21 C 1.50692 * 119.61979 * 179.70640 * 20 6 4 22 22 N 1.31848 * 119.61805 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47225 * 89.99650 * 1 2 3 24 24 H 1.09007 * 109.47257 * 209.99782 * 1 2 3 25 25 H 1.09003 * 109.47234 * 329.99354 * 1 2 3 26 26 H 1.07999 * 120.42274 * 0.05309 * 3 2 1 27 27 H 1.09000 * 109.47402 * 266.32673 * 5 4 3 28 28 H 1.09005 * 109.46576 * 26.32311 * 5 4 3 29 29 H 1.09000 * 109.47267 * 146.31582 * 5 4 3 30 30 H 1.08999 * 109.47095 * 305.00304 * 9 7 6 31 31 H 1.09003 * 109.47325 * 64.99697 * 9 7 6 32 32 H 1.08997 * 109.47590 * 185.00009 * 9 7 6 33 33 H 1.00906 * 110.99298 * 100.60590 * 10 7 6 34 34 H 1.08997 * 109.47613 * 300.00680 * 11 10 7 35 35 H 1.09001 * 109.47090 * 60.00433 * 11 10 7 36 36 H 0.97002 * 119.99989 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47184 * 84.24688 * 21 20 6 38 38 H 1.08999 * 109.47643 * 204.25415 * 21 20 6 39 39 H 1.09004 * 109.46961 * 324.25310 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 -0.0005 5 6 4.3580 2.4791 0.0000 6 6 4.2266 -0.0342 -0.0016 7 6 5.7322 -0.0986 -0.0028 8 1 6.0528 -1.0969 -0.3010 9 6 6.2569 0.2074 1.4014 10 7 6.2639 0.8899 -0.9505 11 6 7.3362 0.3098 -1.7700 12 6 7.8560 1.3512 -2.7273 13 1 7.4325 2.3446 -2.7267 14 6 8.8723 1.0356 -3.6039 15 7 9.3263 1.9445 -4.4390 16 14 9.6054 -0.6826 -3.6045 17 1 8.8545 -1.5409 -4.5555 18 1 11.0297 -0.6129 -4.0191 19 1 9.5151 -1.2597 -2.2393 20 6 3.4766 -1.1947 -0.0078 21 6 4.1726 -2.5312 -0.0157 22 7 2.1586 -1.1462 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6507 2.1373 0.0009 27 1 4.6024 2.7563 -1.0254 28 1 3.7591 3.2672 0.4565 29 1 5.2778 2.3457 0.5695 30 1 5.8633 1.1674 1.7352 31 1 5.9353 -0.5757 2.0881 32 1 7.3460 0.2484 1.3814 33 1 6.5839 1.7168 -0.4688 34 1 8.1469 -0.0256 -1.1232 35 1 6.9455 -0.5383 -2.3322 36 1 10.0416 1.7226 -5.0555 37 1 4.4324 -2.8117 1.0051 38 1 3.5093 -3.2839 -0.4417 39 1 5.0799 -2.4648 -0.6162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037240331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:56 Heat of formation + Delta-G solvation = 5.811814 kcal Electronic energy + Delta-G solvation = -18294.505602 eV Core-core repulsion = 15621.766275 eV Total energy + Delta-G solvation = -2672.739328 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59042 -38.26532 -35.25346 -34.89140 -33.92450 -31.58269 -29.91217 -28.73204 -28.11959 -27.44429 -23.82076 -23.03768 -22.03879 -21.33427 -18.92990 -17.95086 -16.82581 -16.35400 -15.96267 -15.64859 -15.56179 -15.37738 -14.62696 -14.52989 -14.19178 -14.11415 -13.84277 -13.69549 -13.42274 -13.36737 -13.07185 -12.99952 -12.75681 -12.65350 -12.59876 -12.50765 -12.30885 -11.86165 -11.52979 -11.39829 -10.80883 -10.34859 -10.15743 -9.47884 -9.08381 -8.29505 -6.33332 0.23426 0.43072 1.35329 1.35828 1.46557 2.33934 2.80685 3.05155 3.33759 3.49675 3.81009 3.86119 4.00297 4.03834 4.30742 4.35879 4.54677 4.60909 4.65229 4.68340 4.70148 4.76125 4.79586 4.82110 4.90363 4.93149 4.95543 5.07640 5.12300 5.18181 5.24819 5.35546 5.42427 5.52936 5.59280 5.94437 5.98925 6.57097 6.67253 6.78644 7.14477 7.31763 8.87048 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027450 B = 0.005790 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.805172 B = 4835.011442 C = 5103.115824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.109 3.891 3 C -0.190 4.190 4 C -0.022 4.022 5 C -0.106 4.106 6 C -0.133 4.133 7 C 0.117 3.883 8 H 0.079 0.921 9 C -0.165 4.165 10 N -0.678 5.678 11 C 0.175 3.825 12 C -0.523 4.523 13 H 0.039 0.961 14 C 0.009 3.991 15 N -0.948 5.948 16 Si 0.947 3.053 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.247 1.247 20 C 0.115 3.885 21 C -0.103 4.103 22 N -0.514 5.514 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.154 0.846 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.342 0.658 34 H -0.009 1.009 35 H 0.017 0.983 36 H 0.267 0.733 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.210 -5.228 13.494 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.029 4.029 3 C -0.209 4.209 4 C -0.030 4.030 5 C -0.163 4.163 6 C -0.136 4.136 7 C 0.006 3.994 8 H 0.097 0.903 9 C -0.223 4.223 10 N -0.310 5.310 11 C 0.047 3.953 12 C -0.561 4.561 13 H 0.058 0.942 14 C -0.188 4.188 15 N -0.588 5.588 16 Si 0.770 3.230 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.170 1.170 20 C -0.022 4.022 21 C -0.160 4.160 22 N -0.226 5.226 23 H 0.100 0.900 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.172 0.828 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.009 0.991 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.028 -6.081 12.897 20.002 hybrid contribution 1.793 0.378 -0.071 1.834 sum -12.235 -5.703 12.825 18.620 Atomic orbital electron populations 1.20727 0.86729 1.04212 1.03575 1.21753 0.98374 0.88100 0.94691 1.22079 0.93911 1.00048 1.04896 1.20375 0.94018 0.95813 0.92790 1.20916 0.99487 0.92897 1.02975 1.20681 0.96637 0.93445 1.02850 1.20495 0.89856 0.96781 0.92232 0.90328 1.22360 1.01030 1.03053 0.95855 1.60651 1.37461 1.07682 1.25228 1.19804 0.88775 0.94606 0.92145 1.21316 1.17753 0.98542 1.18531 0.94239 1.25837 0.96891 1.01507 0.94609 1.70050 1.29161 1.36365 1.23260 0.85721 0.77634 0.79720 0.79899 1.19569 1.20747 1.17018 1.21356 0.89419 0.96071 0.95359 1.20781 0.99732 0.91768 1.03737 1.67368 1.09323 1.30395 1.15497 0.90027 0.90698 0.88652 0.82842 0.91169 0.90176 0.90809 0.91306 0.90775 0.92196 0.83770 0.99088 0.96483 0.92452 0.88888 0.90441 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 10.17 71.24 0.72 -1.02 16 2 C 0.11 2.92 6.78 42.55 0.29 3.21 16 3 C -0.19 -4.98 9.44 22.36 0.21 -4.77 16 4 C -0.02 -0.66 5.80 -19.67 -0.11 -0.77 16 5 C -0.11 -2.89 8.18 71.24 0.58 -2.31 16 6 C -0.13 -4.21 4.95 -19.78 -0.10 -4.31 16 7 C 0.12 3.71 2.50 44.17 0.11 3.82 16 8 H 0.08 2.52 5.10 -2.38 -0.01 2.51 16 9 C -0.16 -4.22 8.89 71.98 0.64 -3.58 16 10 N -0.68 -26.49 4.62 -499.48 -2.31 -28.80 16 11 C 0.18 8.18 4.22 85.56 0.36 8.54 16 12 C -0.52 -29.89 9.87 25.60 0.25 -29.64 16 13 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 14 C 0.01 0.52 5.47 84.65 0.46 0.99 16 15 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 16 Si 0.95 43.79 27.47 68.60 1.88 45.67 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 20 C 0.12 3.55 6.78 42.53 0.29 3.84 16 21 C -0.10 -2.59 9.54 71.23 0.68 -1.91 16 22 N -0.51 -15.92 10.19 -172.09 -1.75 -17.67 16 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 26 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 27 H 0.07 2.27 7.83 -2.39 -0.02 2.25 16 28 H 0.08 1.71 8.08 -2.38 -0.02 1.69 16 29 H 0.07 1.96 3.87 -2.39 -0.01 1.95 16 30 H 0.07 1.65 6.07 -2.39 -0.01 1.64 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.34 12.82 6.23 -89.69 -0.56 12.26 16 34 H -0.01 -0.39 7.20 -2.39 -0.02 -0.40 16 35 H 0.02 0.81 7.54 -2.39 -0.02 0.80 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.92 6.18 -2.39 -0.01 1.90 16 Total: -1.00 -68.14 309.05 2.94 -65.20 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.43 Total: 22.28 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.39 Total: -27.92 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -3.76 Total: -105.24 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -68.14 2.94 -65.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.014 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds