Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46936 * 2 1 4 4 N 1.46899 * 109.47567 * 120.00408 * 2 1 3 5 5 C 1.46908 * 110.99322 * 306.57555 * 4 2 1 6 6 C 1.50694 * 109.47395 * 287.23700 * 5 4 2 7 7 H 1.08006 * 120.00033 * 357.68347 * 6 5 4 8 8 C 1.37877 * 120.00081 * 177.68966 * 6 5 4 9 9 N 1.31511 * 119.99952 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99901 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47062 * 89.99328 * 10 8 6 12 12 H 1.48496 * 109.47157 * 209.99409 * 10 8 6 13 13 H 1.48501 * 109.47087 * 329.99526 * 10 8 6 14 14 C 1.46896 * 111.00007 * 70.52663 * 4 2 1 15 15 C 1.50696 * 109.46921 * 74.71161 * 14 4 2 16 16 C 1.38288 * 119.92564 * 83.66984 * 15 14 4 17 17 C 1.38100 * 120.07858 * 180.02562 * 16 15 14 18 18 C 1.38915 * 119.92220 * 0.02562 * 17 16 15 19 19 N 1.39681 * 120.07373 * 179.97438 * 18 17 16 20 20 C 1.38911 * 119.85293 * 0.25131 * 18 17 16 21 21 C 1.38110 * 119.92106 * 359.49180 * 20 18 17 22 22 H 1.09000 * 109.47383 * 308.12138 * 1 2 3 23 23 H 1.09000 * 109.47191 * 68.11948 * 1 2 3 24 24 H 1.09001 * 109.46631 * 188.11602 * 1 2 3 25 25 H 1.09006 * 109.47221 * 240.00166 * 2 1 3 26 26 H 1.09008 * 109.47057 * 171.70951 * 3 2 1 27 27 H 1.09002 * 109.47477 * 291.71051 * 3 2 1 28 28 H 1.09003 * 109.47258 * 51.71299 * 3 2 1 29 29 H 1.09003 * 109.47225 * 47.24290 * 5 4 2 30 30 H 1.09008 * 109.46432 * 167.23525 * 5 4 2 31 31 H 0.96995 * 119.99599 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47550 * 314.71365 * 14 4 2 33 33 H 1.09004 * 109.47350 * 194.71125 * 14 4 2 34 34 H 1.07999 * 119.96128 * 0.02562 * 16 15 14 35 35 H 1.07994 * 120.04044 * 179.97438 * 17 16 15 36 36 H 0.96997 * 119.99492 * 0.02562 * 19 18 17 37 37 H 0.96997 * 119.99884 * 179.72424 * 19 18 17 38 38 H 1.07996 * 120.03694 * 179.72972 * 20 18 17 39 39 H 1.08002 * 119.96062 * 180.25096 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.4247 -0.1231 2.4158 6 6 2.0328 1.2288 2.6871 7 1 2.8126 1.6091 2.0439 8 6 1.5938 1.9801 3.7566 9 7 0.6440 1.5172 4.5397 10 14 2.3481 3.6555 4.0933 11 1 1.5821 4.6987 3.3650 12 1 2.3024 3.9351 5.5510 13 1 3.7594 3.6648 3.6315 14 6 1.7642 -2.1366 1.1146 15 6 2.7362 -2.7628 0.1481 16 6 4.0020 -3.1191 0.5763 17 6 4.8955 -3.6926 -0.3068 18 6 4.5216 -3.9111 -1.6267 19 7 5.4230 -4.4906 -2.5228 20 6 3.2514 -3.5468 -2.0550 21 6 2.3610 -2.9785 -1.1652 22 1 -0.3634 0.6344 0.8085 23 1 -0.3633 0.3830 -0.9536 24 1 -0.3632 -1.0174 0.1451 25 1 1.8933 -0.5138 -0.8900 26 1 3.1199 1.4461 0.1482 27 1 1.8026 1.9118 -0.9548 28 1 1.5607 1.9973 0.8066 29 1 0.3486 -0.0166 2.2784 30 1 1.6194 -0.7851 3.2596 31 1 0.3355 2.0456 5.2923 32 1 0.7455 -2.3056 0.7659 33 1 1.8904 -2.5864 2.0995 34 1 4.2921 -2.9485 1.6025 35 1 5.8839 -3.9702 0.0281 36 1 6.3109 -4.7412 -2.2234 37 1 5.1594 -4.6463 -3.4432 38 1 2.9591 -3.7113 -3.0816 39 1 1.3719 -2.6988 -1.4965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042528512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = 31.142827 kcal Electronic energy + Delta-G solvation = -18292.695769 eV Core-core repulsion = 15621.054876 eV Total energy + Delta-G solvation = -2671.640893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.28872 -37.51037 -34.48539 -32.50537 -31.14345 -30.56598 -28.96790 -27.05741 -26.01804 -23.91607 -22.59364 -21.99655 -20.76113 -18.51273 -16.88261 -16.71192 -16.37124 -15.14329 -14.99795 -14.59958 -14.14504 -13.61447 -13.46085 -13.20087 -13.03386 -12.77827 -12.50814 -12.11272 -11.47668 -11.29238 -11.12217 -11.04827 -10.78479 -10.68819 -10.53173 -10.47315 -10.28519 -10.11362 -10.00185 -9.28930 -8.89293 -8.59694 -8.31451 -7.27162 -7.03205 -5.94667 -3.91087 1.75376 1.91595 3.35444 3.42284 3.46659 3.94207 4.16693 4.49943 5.11240 5.22398 5.25397 5.39152 5.46977 5.72176 5.79068 5.85208 5.96517 6.03399 6.07701 6.18653 6.30072 6.40378 6.45764 6.56288 6.65580 6.68782 6.78257 6.83705 7.07664 7.15845 7.17311 7.35920 7.51405 7.57858 7.63265 7.79697 7.93964 8.23786 8.35755 8.68010 9.14244 9.68647 11.15895 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031739 B = 0.005387 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.984710 B = 5196.631566 C = 5390.651642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.091 3.909 3 C -0.145 4.145 4 N -0.525 5.525 5 C 0.185 3.815 6 C -0.499 4.499 7 H 0.075 0.925 8 C 0.052 3.948 9 N -0.901 5.901 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.092 3.908 15 C -0.112 4.112 16 C -0.050 4.050 17 C -0.199 4.199 18 C 0.201 3.799 19 N -0.886 5.886 20 C -0.201 4.201 21 C -0.070 4.070 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.025 0.975 28 H 0.095 0.905 29 H 0.005 0.995 30 H 0.023 0.977 31 H 0.259 0.741 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.394 0.606 37 H 0.393 0.607 38 H 0.112 0.888 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 -9.970 -12.233 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.017 4.017 3 C -0.202 4.202 4 N -0.249 5.249 5 C 0.060 3.940 6 C -0.537 4.537 7 H 0.093 0.907 8 C -0.149 4.149 9 N -0.541 5.541 10 Si 0.719 3.281 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.036 4.036 15 C -0.114 4.114 16 C -0.069 4.069 17 C -0.221 4.221 18 C 0.098 3.902 19 N -0.426 5.426 20 C -0.223 4.223 21 C -0.089 4.089 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.113 0.887 29 H 0.022 0.978 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.221 0.779 37 H 0.221 0.779 38 H 0.130 0.870 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.329 -9.812 -11.982 16.378 hybrid contribution -0.281 0.633 -0.041 0.694 sum 5.049 -9.179 -12.023 15.947 Atomic orbital electron populations 1.22456 0.99016 1.01149 1.01558 1.21411 0.91583 0.95725 0.93025 1.22247 1.01628 0.95779 1.00564 1.62372 1.59208 0.99668 1.03662 1.19871 0.93621 0.94994 0.85525 1.21471 1.19879 1.01242 1.11124 0.90736 1.24981 0.95449 0.98252 0.96192 1.69962 1.29043 1.37913 1.17230 0.86611 0.79778 0.84497 0.77254 1.20835 1.21447 1.19806 1.20979 0.94551 0.90725 0.97390 1.19741 0.95893 1.01242 0.94563 1.20795 0.92349 0.94435 0.99294 1.20532 1.00591 1.08607 0.92419 1.17730 0.89747 0.92946 0.89781 1.42394 1.16142 1.71910 1.12119 1.20444 0.93606 1.08560 0.99730 1.20785 0.98626 0.96682 0.92784 0.90980 0.93798 0.93736 0.92328 0.92855 0.95587 0.88689 0.97765 0.95942 0.93154 0.94960 0.90995 0.85991 0.86830 0.77860 0.77939 0.86994 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 8.32 37.16 0.31 -3.10 16 2 C 0.09 1.80 2.83 -67.72 -0.19 1.61 16 3 C -0.15 -2.96 7.69 37.16 0.29 -2.67 16 4 N -0.53 -11.27 4.42 -229.52 -1.01 -12.28 16 5 C 0.18 4.70 4.48 -4.97 -0.02 4.67 16 6 C -0.50 -13.56 6.67 -34.44 -0.23 -13.79 16 7 H 0.07 2.01 5.36 -52.48 -0.28 1.73 16 8 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 10 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 14 C 0.09 1.69 5.02 -4.98 -0.03 1.67 16 15 C -0.11 -1.85 4.99 -104.59 -0.52 -2.37 16 16 C -0.05 -0.78 9.72 -39.61 -0.38 -1.17 16 17 C -0.20 -2.75 9.90 -39.38 -0.39 -3.14 16 18 C 0.20 2.59 6.75 -83.78 -0.57 2.02 16 19 N -0.89 -8.17 9.09 32.41 0.29 -7.87 16 20 C -0.20 -2.68 9.90 -39.38 -0.39 -3.07 16 21 C -0.07 -1.03 8.37 -39.61 -0.33 -1.37 16 22 H 0.07 1.54 6.49 -51.93 -0.34 1.20 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.79 6.26 -51.93 -0.33 0.46 16 25 H 0.06 1.09 6.30 -51.93 -0.33 0.76 16 26 H 0.05 1.12 7.48 -51.92 -0.39 0.73 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 2.19 5.45 -51.93 -0.28 1.91 16 29 H 0.00 0.12 5.69 -51.93 -0.30 -0.17 16 30 H 0.02 0.62 7.68 -51.92 -0.40 0.22 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.03 0.58 6.03 -51.93 -0.31 0.27 16 33 H 0.07 1.35 7.64 -51.93 -0.40 0.95 16 34 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.39 2.94 8.84 -40.82 -0.36 2.58 16 37 H 0.39 2.88 8.84 -40.82 -0.36 2.52 16 38 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.11 1.59 8.02 -52.49 -0.42 1.17 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -29.72 306.59 -8.68 -38.39 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.74 Total: 5.75 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.56 Total: -19.36 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.02 Total: -45.93 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.72 -8.68 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.536 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds