Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46936 * 2 1 4 4 N 1.46899 * 109.47567 * 120.00408 * 2 1 3 5 5 C 1.46908 * 110.99322 * 306.57555 * 4 2 1 6 6 C 1.50694 * 109.47395 * 287.23700 * 5 4 2 7 7 H 1.08006 * 120.00033 * 357.68347 * 6 5 4 8 8 C 1.37877 * 120.00081 * 177.68966 * 6 5 4 9 9 N 1.31511 * 119.99952 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99901 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47062 * 89.99328 * 10 8 6 12 12 H 1.48496 * 109.47157 * 209.99409 * 10 8 6 13 13 H 1.48501 * 109.47087 * 329.99526 * 10 8 6 14 14 C 1.46896 * 111.00007 * 70.52663 * 4 2 1 15 15 C 1.50696 * 109.46921 * 74.71161 * 14 4 2 16 16 C 1.38288 * 119.92564 * 83.66984 * 15 14 4 17 17 C 1.38100 * 120.07858 * 180.02562 * 16 15 14 18 18 C 1.38915 * 119.92220 * 0.02562 * 17 16 15 19 19 N 1.39681 * 120.07373 * 179.97438 * 18 17 16 20 20 C 1.38911 * 119.85293 * 0.25131 * 18 17 16 21 21 C 1.38110 * 119.92106 * 359.49180 * 20 18 17 22 22 H 1.09000 * 109.47383 * 308.12138 * 1 2 3 23 23 H 1.09000 * 109.47191 * 68.11948 * 1 2 3 24 24 H 1.09001 * 109.46631 * 188.11602 * 1 2 3 25 25 H 1.09006 * 109.47221 * 240.00166 * 2 1 3 26 26 H 1.09008 * 109.47057 * 171.70951 * 3 2 1 27 27 H 1.09002 * 109.47477 * 291.71051 * 3 2 1 28 28 H 1.09003 * 109.47258 * 51.71299 * 3 2 1 29 29 H 1.09003 * 109.47225 * 47.24290 * 5 4 2 30 30 H 1.09008 * 109.46432 * 167.23525 * 5 4 2 31 31 H 0.96995 * 119.99599 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47550 * 314.71365 * 14 4 2 33 33 H 1.09004 * 109.47350 * 194.71125 * 14 4 2 34 34 H 1.07999 * 119.96128 * 0.02562 * 16 15 14 35 35 H 1.07994 * 120.04044 * 179.97438 * 17 16 15 36 36 H 0.96997 * 119.99492 * 0.02562 * 19 18 17 37 37 H 0.96997 * 119.99884 * 179.72424 * 19 18 17 38 38 H 1.07996 * 120.03694 * 179.72972 * 20 18 17 39 39 H 1.08002 * 119.96062 * 180.25096 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.4247 -0.1231 2.4158 6 6 2.0328 1.2288 2.6871 7 1 2.8126 1.6091 2.0439 8 6 1.5938 1.9801 3.7566 9 7 0.6440 1.5172 4.5397 10 14 2.3481 3.6555 4.0933 11 1 1.5821 4.6987 3.3650 12 1 2.3024 3.9351 5.5510 13 1 3.7594 3.6648 3.6315 14 6 1.7642 -2.1366 1.1146 15 6 2.7362 -2.7628 0.1481 16 6 4.0020 -3.1191 0.5763 17 6 4.8955 -3.6926 -0.3068 18 6 4.5216 -3.9111 -1.6267 19 7 5.4230 -4.4906 -2.5228 20 6 3.2514 -3.5468 -2.0550 21 6 2.3610 -2.9785 -1.1652 22 1 -0.3634 0.6344 0.8085 23 1 -0.3633 0.3830 -0.9536 24 1 -0.3632 -1.0174 0.1451 25 1 1.8933 -0.5138 -0.8900 26 1 3.1199 1.4461 0.1482 27 1 1.8026 1.9118 -0.9548 28 1 1.5607 1.9973 0.8066 29 1 0.3486 -0.0166 2.2784 30 1 1.6194 -0.7851 3.2596 31 1 0.3355 2.0456 5.2923 32 1 0.7455 -2.3056 0.7659 33 1 1.8904 -2.5864 2.0995 34 1 4.2921 -2.9485 1.6025 35 1 5.8839 -3.9702 0.0281 36 1 6.3109 -4.7412 -2.2234 37 1 5.1594 -4.6463 -3.4432 38 1 2.9591 -3.7113 -3.0816 39 1 1.3719 -2.6988 -1.4965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042528512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = 11.961025 kcal Electronic energy + Delta-G solvation = -18293.527554 eV Core-core repulsion = 15621.054876 eV Total energy + Delta-G solvation = -2672.472678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.49301 -39.03573 -35.59287 -34.55864 -32.60092 -31.66616 -30.53991 -28.70417 -27.68367 -25.39870 -24.06752 -23.53677 -21.95027 -20.15892 -18.48124 -17.84195 -17.61094 -16.80879 -16.55527 -16.16019 -15.71388 -14.92400 -14.89614 -14.56089 -14.18578 -14.13113 -13.90773 -13.87544 -13.12554 -13.04403 -12.90486 -12.60721 -12.56575 -12.35924 -12.17472 -11.91311 -11.79082 -11.67985 -11.26196 -11.09107 -10.84858 -10.45801 -9.70272 -8.80682 -8.24685 -8.07861 -6.12228 0.65636 0.78519 1.43191 1.44062 1.55092 2.46122 3.01010 3.13610 3.22441 3.59791 4.03769 4.15150 4.23853 4.29142 4.39222 4.47800 4.62688 4.65706 4.77230 4.88352 4.92292 5.05256 5.07858 5.09917 5.18914 5.28739 5.30532 5.37866 5.50554 5.60748 5.65676 5.80100 5.82331 6.00727 6.09629 6.22151 6.56132 6.71219 6.80652 7.00561 7.11598 7.51849 9.01321 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031739 B = 0.005387 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.984710 B = 5196.631566 C = 5390.651642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 C -0.140 4.140 4 N -0.533 5.533 5 C 0.201 3.799 6 C -0.501 4.501 7 H 0.075 0.925 8 C -0.001 4.001 9 N -0.939 5.939 10 Si 0.956 3.044 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.266 1.266 14 C 0.096 3.904 15 C -0.136 4.136 16 C -0.065 4.065 17 C -0.206 4.206 18 C 0.208 3.792 19 N -0.870 5.870 20 C -0.203 4.203 21 C -0.072 4.072 22 H 0.037 0.963 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.063 0.937 29 H -0.016 1.016 30 H -0.009 1.009 31 H 0.259 0.741 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.405 0.595 37 H 0.406 0.594 38 H 0.139 0.861 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 -10.258 -14.933 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 C -0.197 4.197 4 N -0.257 5.257 5 C 0.074 3.926 6 C -0.540 4.540 7 H 0.093 0.907 8 C -0.198 4.198 9 N -0.581 5.581 10 Si 0.781 3.219 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.191 1.191 14 C -0.031 4.031 15 C -0.139 4.139 16 C -0.085 4.085 17 C -0.229 4.229 18 C 0.102 3.898 19 N -0.410 5.410 20 C -0.226 4.226 21 C -0.091 4.091 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.002 0.998 30 H 0.009 0.991 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.150 0.850 36 H 0.234 0.766 37 H 0.236 0.764 38 H 0.157 0.843 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.595 -10.124 -14.728 19.051 hybrid contribution -0.607 0.611 0.690 1.103 sum 5.989 -9.514 -14.038 17.985 Atomic orbital electron populations 1.22332 0.98194 1.00945 1.01728 1.21497 0.92240 0.95357 0.92731 1.22118 1.00503 0.96061 1.01012 1.62306 1.59047 1.01436 1.02891 1.19517 0.92477 0.94051 0.86508 1.21748 1.19501 1.01849 1.10882 0.90653 1.25790 0.95917 1.01988 0.96095 1.70094 1.30603 1.39473 1.17901 0.85581 0.79176 0.80117 0.76996 1.19954 1.21333 1.19082 1.20922 0.95710 0.88898 0.97578 1.19538 0.95869 1.03383 0.95062 1.20815 0.92804 0.95491 0.99351 1.20697 1.01037 1.08395 0.92746 1.17844 0.90167 0.91903 0.89842 1.42371 1.16039 1.70361 1.12250 1.20718 0.93382 1.07768 1.00690 1.20889 0.99416 0.96683 0.92127 0.94423 0.90878 0.93136 0.90237 0.93912 0.92524 0.91790 0.99802 0.99138 0.93185 0.94484 0.92585 0.87218 0.85026 0.76590 0.76446 0.84343 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.36 8.32 71.98 0.60 -5.76 16 2 C 0.09 3.48 2.83 44.91 0.13 3.61 16 3 C -0.14 -5.58 7.69 71.98 0.55 -5.02 16 4 N -0.53 -23.37 4.42 -880.06 -3.89 -27.25 16 5 C 0.20 10.67 4.48 85.55 0.38 11.05 16 6 C -0.50 -28.03 6.67 25.60 0.17 -27.86 16 7 H 0.08 4.13 5.36 -2.91 -0.02 4.11 16 8 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 9 N -0.94 -56.99 13.29 21.45 0.28 -56.70 16 10 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 C 0.10 3.67 5.02 85.56 0.43 4.10 16 15 C -0.14 -4.45 4.99 -19.84 -0.10 -4.54 16 16 C -0.07 -2.05 9.72 22.25 0.22 -1.84 16 17 C -0.21 -5.32 9.90 22.40 0.22 -5.10 16 18 C 0.21 4.70 6.75 38.21 0.26 4.96 16 19 N -0.87 -12.67 9.09 -51.36 -0.47 -13.14 16 20 C -0.20 -4.75 9.90 22.40 0.22 -4.53 16 21 C -0.07 -1.99 8.37 22.25 0.19 -1.81 16 22 H 0.04 1.63 6.49 -2.39 -0.02 1.62 16 23 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.05 1.76 6.26 -2.39 -0.01 1.75 16 25 H 0.08 2.78 6.30 -2.38 -0.02 2.77 16 26 H 0.04 1.76 7.48 -2.38 -0.02 1.74 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 2.96 5.45 -2.39 -0.01 2.95 16 29 H -0.02 -0.89 5.69 -2.39 -0.01 -0.90 16 30 H -0.01 -0.56 7.68 -2.38 -0.02 -0.57 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.04 1.35 6.03 -2.39 -0.01 1.33 16 33 H 0.06 2.24 7.64 -2.39 -0.02 2.22 16 34 H 0.11 3.59 8.06 -2.91 -0.02 3.56 16 35 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 36 H 0.40 4.51 8.84 -92.71 -0.82 3.69 16 37 H 0.41 4.21 8.84 -92.71 -0.82 3.39 16 38 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.12 3.12 8.02 -2.91 -0.02 3.10 16 Total: -1.00 -65.19 306.59 1.11 -64.09 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -0.58 Total: 18.49 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 3.73 Total: -32.34 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -4.07 Total: -97.10 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.19 1.11 -64.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.048 kcal (2) G-P(sol) polarization free energy of solvation -65.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds