Wall clock time and date at job start Mon Mar 30 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 N 1.46901 * 109.46840 * 240.00540 * 2 1 3 5 5 C 1.46898 * 111.00225 * 65.49325 * 4 2 1 6 6 C 1.50695 * 109.47247 * 281.60187 * 5 4 2 7 7 H 1.07998 * 120.00190 * 358.50362 * 6 5 4 8 8 C 1.37880 * 119.99833 * 178.49326 * 6 5 4 9 9 N 1.31516 * 119.99666 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00175 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47626 * 89.99161 * 10 8 6 12 12 H 1.48497 * 109.47151 * 209.99666 * 10 8 6 13 13 H 1.48505 * 109.47042 * 329.99257 * 10 8 6 14 14 C 1.46905 * 110.99866 * 189.45369 * 4 2 1 15 15 C 1.50700 * 109.47437 * 74.70292 * 14 4 2 16 16 C 1.38302 * 119.96246 * 266.81384 * 15 14 4 17 17 C 1.38273 * 120.14283 * 179.72232 * 16 15 14 18 18 C 1.38117 * 120.07795 * 0.55466 * 17 16 15 19 19 C 1.38889 * 119.92438 * 359.71685 * 18 17 16 20 20 N 1.39676 * 120.07621 * 179.97438 * 19 18 17 21 21 C 1.38080 * 119.95635 * 87.08691 * 15 14 4 22 22 H 1.09001 * 109.46983 * 51.13737 * 1 2 3 23 23 H 1.08994 * 109.47420 * 171.13406 * 1 2 3 24 24 H 1.09001 * 109.47432 * 291.14063 * 1 2 3 25 25 H 1.08993 * 109.47264 * 120.00058 * 2 1 3 26 26 H 1.09008 * 109.47150 * 67.09378 * 3 2 1 27 27 H 1.08999 * 109.47209 * 187.09034 * 3 2 1 28 28 H 1.08995 * 109.47409 * 307.09202 * 3 2 1 29 29 H 1.08999 * 109.47165 * 41.61032 * 5 4 2 30 30 H 1.09005 * 109.46745 * 161.60303 * 5 4 2 31 31 H 0.97002 * 119.99498 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47011 * 194.71129 * 14 4 2 33 33 H 1.09005 * 109.46532 * 314.70249 * 14 4 2 34 34 H 1.08000 * 119.92839 * 359.97438 * 16 15 14 35 35 H 1.08006 * 119.95655 * 180.27344 * 17 16 15 36 36 H 1.08002 * 120.04200 * 179.74583 * 18 17 16 37 37 H 0.96997 * 119.99960 * 180.02562 * 20 19 18 38 38 H 0.97002 * 120.00180 * 0.02562 * 20 19 18 39 39 H 1.07997 * 120.04327 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.6587 0.0454 -2.4175 6 6 0.2124 -0.2139 -2.7519 7 1 -0.3729 -0.8810 -2.1365 8 6 -0.3636 0.4007 -3.8435 9 7 -1.6260 0.1747 -4.1351 10 14 0.6490 1.5541 -4.9082 11 1 1.2971 0.7811 -5.9979 12 1 -0.2369 2.5909 -5.4959 13 1 1.6918 2.2076 -4.0770 14 6 3.4706 -0.9102 -1.1263 15 6 3.7629 -2.0251 -0.1554 16 6 4.0364 -1.7339 1.1687 17 6 4.2995 -2.7543 2.0640 18 6 4.3011 -4.0675 1.6359 19 6 4.0323 -4.3630 0.3057 20 7 4.0336 -5.6898 -0.1307 21 6 3.7628 -3.3357 -0.5901 22 1 -0.3633 0.6448 -0.8002 23 1 -0.3634 -1.0153 -0.1584 24 1 -0.3634 0.3706 0.9585 25 1 1.8933 -0.5138 0.8899 26 1 1.7839 1.9184 0.9467 27 1 3.1225 1.4451 -0.1268 28 1 1.5768 1.9916 -0.8197 29 1 1.8082 1.1126 -2.2535 30 1 2.2879 -0.2869 -3.2433 31 1 -2.0311 0.6068 -4.9033 32 1 3.8478 -1.1792 -2.1128 33 1 3.9585 0.0038 -0.7876 34 1 4.0406 -0.7076 1.5050 35 1 4.5084 -2.5238 3.0983 36 1 4.5107 -4.8638 2.3349 37 1 3.8461 -5.8948 -1.0600 38 1 4.2220 -6.4062 0.4956 39 1 3.5530 -3.5620 -1.6250 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042528557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:21 Heat of formation + Delta-G solvation = 32.599078 kcal Electronic energy + Delta-G solvation = -18385.027702 eV Core-core repulsion = 15713.449957 eV Total energy + Delta-G solvation = -2671.577745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.36128 -37.62163 -34.39413 -32.52080 -31.94826 -30.11631 -28.61389 -27.58975 -26.36221 -24.48593 -22.21654 -21.71730 -20.82394 -18.57023 -16.87489 -16.70273 -16.26476 -15.66814 -15.36072 -14.64025 -14.19732 -13.72444 -13.47470 -13.27556 -13.08255 -12.83221 -12.41929 -12.26280 -11.61769 -11.45774 -11.27181 -11.08803 -10.93045 -10.86478 -10.57485 -10.41955 -10.36529 -10.14305 -9.94106 -9.59286 -9.01029 -8.48211 -8.44345 -7.35628 -7.19812 -5.98132 -3.91509 1.71508 1.89476 3.30361 3.38372 3.39728 3.98031 4.13291 4.46603 4.96561 5.09834 5.22540 5.32244 5.45347 5.60135 5.70950 5.75499 5.82604 5.89482 5.98587 6.07767 6.20442 6.26942 6.36610 6.51801 6.58229 6.59812 6.67771 6.78326 6.92058 6.95661 7.04964 7.16364 7.20005 7.52630 7.65992 7.72462 7.85695 8.01083 8.16837 8.75438 9.14839 9.63815 11.14449 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.006114 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.110718 B = 4578.574007 C = 4953.345695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.087 3.913 3 C -0.186 4.186 4 N -0.513 5.513 5 C 0.152 3.848 6 C -0.497 4.497 7 H 0.090 0.910 8 C 0.065 3.935 9 N -0.902 5.902 10 Si 0.868 3.132 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.269 1.269 14 C 0.081 3.919 15 C -0.012 4.012 16 C -0.173 4.173 17 C -0.077 4.077 18 C -0.208 4.208 19 C 0.210 3.790 20 N -0.883 5.883 21 C -0.173 4.173 22 H 0.088 0.912 23 H 0.057 0.943 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.003 0.997 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.397 0.603 38 H 0.393 0.607 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.281 -5.613 9.923 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 C -0.245 4.245 4 N -0.236 5.236 5 C 0.026 3.974 6 C -0.535 4.535 7 H 0.108 0.892 8 C -0.136 4.136 9 N -0.542 5.542 10 Si 0.695 3.305 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.193 1.193 14 C -0.047 4.047 15 C -0.014 4.014 16 C -0.194 4.194 17 C -0.096 4.096 18 C -0.231 4.231 19 C 0.107 3.893 20 N -0.422 5.422 21 C -0.196 4.196 22 H 0.107 0.893 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.020 0.980 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.225 0.775 38 H 0.221 0.779 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.898 -5.963 9.760 16.504 hybrid contribution 0.826 1.022 -0.781 1.529 sum 12.724 -4.941 8.979 16.338 Atomic orbital electron populations 1.22034 0.93726 1.03361 1.00359 1.21545 0.96721 0.90980 0.92933 1.22494 1.00329 0.99806 1.01851 1.62213 1.08682 1.49567 1.03138 1.20377 0.97928 0.92103 0.86972 1.21227 0.93679 1.27122 1.11476 0.89225 1.24892 0.94780 0.96660 0.97220 1.69891 1.11700 1.44323 1.28314 0.86981 0.80611 0.81490 0.81371 1.20394 1.21389 1.19347 1.21167 0.91270 0.94598 0.97647 1.19630 0.93745 0.94003 0.93984 1.20792 1.06516 0.98777 0.93271 1.20749 0.97854 0.92228 0.98731 1.20435 1.11666 0.96950 0.94089 1.17768 0.93860 0.84842 0.92860 1.42429 1.82165 1.04299 1.13312 1.20464 1.08159 0.91515 0.99433 0.89307 0.92380 0.95287 0.91533 0.93193 0.93602 0.91451 0.97965 0.96529 0.92854 0.90748 0.94401 0.86920 0.86745 0.87027 0.77507 0.77929 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.77 37.16 0.29 -2.55 16 2 C 0.09 1.66 2.83 -67.71 -0.19 1.47 16 3 C -0.19 -3.24 8.42 37.16 0.31 -2.93 16 4 N -0.51 -10.63 4.38 -229.52 -1.01 -11.63 16 5 C 0.15 3.60 3.60 -4.98 -0.02 3.59 16 6 C -0.50 -13.67 7.31 -34.44 -0.25 -13.93 16 7 H 0.09 2.69 6.16 -52.49 -0.32 2.36 16 8 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 9 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 10 Si 0.87 21.33 27.50 -169.99 -4.67 16.65 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.35 6.50 56.52 0.37 -5.99 16 14 C 0.08 1.43 5.02 -4.97 -0.02 1.40 16 15 C -0.01 -0.20 5.06 -104.66 -0.53 -0.73 16 16 C -0.17 -2.53 8.28 -39.54 -0.33 -2.86 16 17 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 18 C -0.21 -2.68 9.90 -39.38 -0.39 -3.07 16 19 C 0.21 2.86 6.75 -83.78 -0.57 2.29 16 20 N -0.88 -9.09 9.09 32.41 0.29 -8.80 16 21 C -0.17 -2.69 9.56 -39.38 -0.38 -3.07 16 22 H 0.09 2.10 5.93 -51.93 -0.31 1.79 16 23 H 0.06 1.28 7.39 -51.93 -0.38 0.90 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 1.20 6.09 -51.93 -0.32 0.88 16 26 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.05 0.74 6.22 -51.93 -0.32 0.42 16 28 H 0.07 1.31 6.32 -51.93 -0.33 0.98 16 29 H 0.00 0.07 4.42 -51.93 -0.23 -0.16 16 30 H 0.02 0.40 7.06 -51.93 -0.37 0.03 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 1.29 7.55 -51.93 -0.39 0.90 16 33 H 0.04 0.63 5.99 -51.93 -0.31 0.32 16 34 H 0.11 1.54 7.88 -52.49 -0.41 1.13 16 35 H 0.11 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.40 3.66 8.84 -40.82 -0.36 3.30 16 38 H 0.39 3.14 8.84 -40.82 -0.36 2.78 16 39 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -30.35 303.13 -8.31 -38.66 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.70 Total: 7.15 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -2.57 Total: -20.02 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.06 Total: -47.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.35 -8.31 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.258 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds