Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 N 1.46901 * 109.46840 * 240.00540 * 2 1 3 5 5 C 1.46898 * 111.00225 * 65.49325 * 4 2 1 6 6 C 1.50695 * 109.47247 * 281.60187 * 5 4 2 7 7 H 1.07998 * 120.00190 * 358.50362 * 6 5 4 8 8 C 1.37880 * 119.99833 * 178.49326 * 6 5 4 9 9 N 1.31516 * 119.99666 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00175 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47626 * 89.99161 * 10 8 6 12 12 H 1.48497 * 109.47151 * 209.99666 * 10 8 6 13 13 H 1.48505 * 109.47042 * 329.99257 * 10 8 6 14 14 C 1.46905 * 110.99866 * 189.45369 * 4 2 1 15 15 C 1.50700 * 109.47437 * 74.70292 * 14 4 2 16 16 C 1.38302 * 119.96246 * 266.81384 * 15 14 4 17 17 C 1.38273 * 120.14283 * 179.72232 * 16 15 14 18 18 C 1.38117 * 120.07795 * 0.55466 * 17 16 15 19 19 C 1.38889 * 119.92438 * 359.71685 * 18 17 16 20 20 N 1.39676 * 120.07621 * 179.97438 * 19 18 17 21 21 C 1.38080 * 119.95635 * 87.08691 * 15 14 4 22 22 H 1.09001 * 109.46983 * 51.13737 * 1 2 3 23 23 H 1.08994 * 109.47420 * 171.13406 * 1 2 3 24 24 H 1.09001 * 109.47432 * 291.14063 * 1 2 3 25 25 H 1.08993 * 109.47264 * 120.00058 * 2 1 3 26 26 H 1.09008 * 109.47150 * 67.09378 * 3 2 1 27 27 H 1.08999 * 109.47209 * 187.09034 * 3 2 1 28 28 H 1.08995 * 109.47409 * 307.09202 * 3 2 1 29 29 H 1.08999 * 109.47165 * 41.61032 * 5 4 2 30 30 H 1.09005 * 109.46745 * 161.60303 * 5 4 2 31 31 H 0.97002 * 119.99498 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47011 * 194.71129 * 14 4 2 33 33 H 1.09005 * 109.46532 * 314.70249 * 14 4 2 34 34 H 1.08000 * 119.92839 * 359.97438 * 16 15 14 35 35 H 1.08006 * 119.95655 * 180.27344 * 17 16 15 36 36 H 1.08002 * 120.04200 * 179.74583 * 18 17 16 37 37 H 0.96997 * 119.99960 * 180.02562 * 20 19 18 38 38 H 0.97002 * 120.00180 * 0.02562 * 20 19 18 39 39 H 1.07997 * 120.04327 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.6587 0.0454 -2.4175 6 6 0.2124 -0.2139 -2.7519 7 1 -0.3729 -0.8810 -2.1365 8 6 -0.3636 0.4007 -3.8435 9 7 -1.6260 0.1747 -4.1351 10 14 0.6490 1.5541 -4.9082 11 1 1.2971 0.7811 -5.9979 12 1 -0.2369 2.5909 -5.4959 13 1 1.6918 2.2076 -4.0770 14 6 3.4706 -0.9102 -1.1263 15 6 3.7629 -2.0251 -0.1554 16 6 4.0364 -1.7339 1.1687 17 6 4.2995 -2.7543 2.0640 18 6 4.3011 -4.0675 1.6359 19 6 4.0323 -4.3630 0.3057 20 7 4.0336 -5.6898 -0.1307 21 6 3.7628 -3.3357 -0.5901 22 1 -0.3633 0.6448 -0.8002 23 1 -0.3634 -1.0153 -0.1584 24 1 -0.3634 0.3706 0.9585 25 1 1.8933 -0.5138 0.8899 26 1 1.7839 1.9184 0.9467 27 1 3.1225 1.4451 -0.1268 28 1 1.5768 1.9916 -0.8197 29 1 1.8082 1.1126 -2.2535 30 1 2.2879 -0.2869 -3.2433 31 1 -2.0311 0.6068 -4.9033 32 1 3.8478 -1.1792 -2.1128 33 1 3.9585 0.0038 -0.7876 34 1 4.0406 -0.7076 1.5050 35 1 4.5084 -2.5238 3.0983 36 1 4.5107 -4.8638 2.3349 37 1 3.8461 -5.8948 -1.0600 38 1 4.2220 -6.4062 0.4956 39 1 3.5530 -3.5620 -1.6250 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042528557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = 12.099001 kcal Electronic energy + Delta-G solvation = -18385.916652 eV Core-core repulsion = 15713.449957 eV Total energy + Delta-G solvation = -2672.466695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53929 -39.07149 -35.45833 -34.57580 -33.25481 -31.67577 -29.91972 -29.06565 -27.90735 -25.94021 -23.82500 -23.07973 -21.97892 -20.17498 -18.86950 -17.67087 -17.44668 -16.94555 -16.65781 -16.41715 -15.82017 -15.11602 -14.82214 -14.60279 -14.50367 -14.27406 -13.87052 -13.66142 -13.30050 -13.02545 -12.85750 -12.67571 -12.43730 -12.36722 -12.13068 -11.95617 -11.80421 -11.70910 -11.31820 -11.29221 -11.01660 -10.64209 -9.57832 -8.83596 -8.30074 -8.17902 -6.15204 0.62214 0.83586 1.35742 1.36938 1.46432 2.39390 2.97352 3.13031 3.14238 3.50257 3.96911 4.12841 4.20164 4.34612 4.39845 4.45390 4.56139 4.63442 4.71096 4.80281 4.87027 4.90312 4.98882 5.08254 5.13720 5.19009 5.21673 5.23233 5.51355 5.54578 5.66448 5.74528 5.76784 5.94038 6.11095 6.15834 6.56011 6.70334 6.77380 6.90111 7.08976 7.43702 8.97998 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.006114 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.110718 B = 4578.574007 C = 4953.345695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.088 3.912 3 C -0.178 4.178 4 N -0.531 5.531 5 C 0.162 3.838 6 C -0.491 4.491 7 H 0.051 0.949 8 C 0.005 3.995 9 N -0.951 5.951 10 Si 0.934 3.066 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.251 1.251 14 C 0.085 3.915 15 C -0.030 4.030 16 C -0.184 4.184 17 C -0.074 4.074 18 C -0.210 4.210 19 C 0.207 3.793 20 N -0.873 5.873 21 C -0.198 4.198 22 H 0.052 0.948 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.007 0.993 30 H 0.016 0.984 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.402 0.598 38 H 0.407 0.593 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.651 -5.458 11.633 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 C -0.237 4.237 4 N -0.254 5.254 5 C 0.035 3.965 6 C -0.529 4.529 7 H 0.069 0.931 8 C -0.191 4.191 9 N -0.594 5.594 10 Si 0.759 3.241 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.175 1.175 14 C -0.042 4.042 15 C -0.031 4.031 16 C -0.204 4.204 17 C -0.092 4.092 18 C -0.233 4.233 19 C 0.102 3.898 20 N -0.413 5.413 21 C -0.222 4.222 22 H 0.071 0.929 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.230 0.770 38 H 0.236 0.764 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.296 -5.841 11.488 19.247 hybrid contribution 0.068 0.825 -1.196 1.455 sum 14.363 -5.016 10.291 18.368 Atomic orbital electron populations 1.21884 0.95441 1.00864 1.00453 1.21572 0.95220 0.92437 0.92833 1.22392 1.00965 0.98058 1.02278 1.62070 1.11266 1.49533 1.02558 1.20130 0.95204 0.92610 0.88551 1.21411 0.95435 1.25578 1.10517 0.93092 1.25715 0.95805 0.98671 0.98876 1.70049 1.13753 1.46234 1.29333 0.85907 0.79278 0.79312 0.79607 1.19677 1.21270 1.17459 1.21152 0.89002 0.95901 0.98176 1.19562 0.95396 0.93585 0.94560 1.20934 1.06924 0.99849 0.92738 1.21112 0.96384 0.91873 0.99877 1.20805 1.10617 0.97873 0.94038 1.17897 0.93291 0.85533 0.93110 1.42417 1.81230 1.03625 1.13993 1.20504 1.09922 0.92303 0.99457 0.92911 0.95062 0.92419 0.89730 0.90631 0.92047 0.93866 0.97546 0.96595 0.92889 0.91346 0.93044 0.85948 0.83833 0.84377 0.76981 0.76369 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 7.77 71.98 0.56 -4.83 16 2 C 0.09 3.25 2.83 44.91 0.13 3.37 16 3 C -0.18 -5.81 8.42 71.98 0.61 -5.21 16 4 N -0.53 -21.92 4.38 -880.08 -3.86 -25.78 16 5 C 0.16 7.69 3.60 85.56 0.31 8.00 16 6 C -0.49 -27.93 7.31 25.60 0.19 -27.75 16 7 H 0.05 3.23 6.16 -2.91 -0.02 3.22 16 8 C 0.01 0.31 5.47 84.65 0.46 0.77 16 9 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 10 Si 0.93 44.39 27.50 68.60 1.89 46.27 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.25 -11.09 6.50 99.48 0.65 -10.44 16 14 C 0.09 2.91 5.02 85.56 0.43 3.34 16 15 C -0.03 -0.93 5.06 -19.89 -0.10 -1.03 16 16 C -0.18 -4.91 8.28 22.29 0.18 -4.72 16 17 C -0.07 -1.68 10.04 22.25 0.22 -1.46 16 18 C -0.21 -4.74 9.90 22.40 0.22 -4.52 16 19 C 0.21 5.25 6.75 38.22 0.26 5.51 16 20 N -0.87 -16.37 9.09 -51.36 -0.47 -16.83 16 21 C -0.20 -6.08 9.56 22.40 0.21 -5.87 16 22 H 0.05 2.57 5.93 -2.39 -0.01 2.56 16 23 H 0.03 1.42 7.39 -2.39 -0.02 1.41 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 2.86 6.09 -2.39 -0.01 2.85 16 26 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.06 1.80 6.22 -2.39 -0.01 1.79 16 28 H 0.04 1.61 6.32 -2.39 -0.02 1.60 16 29 H 0.01 0.33 4.42 -2.39 -0.01 0.32 16 30 H 0.02 0.76 7.06 -2.38 -0.02 0.74 16 31 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.07 2.37 7.55 -2.39 -0.02 2.35 16 33 H 0.05 1.60 5.99 -2.38 -0.01 1.59 16 34 H 0.12 2.95 7.88 -2.91 -0.02 2.93 16 35 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.40 6.94 8.84 -92.71 -0.82 6.12 16 38 H 0.41 5.46 8.84 -92.71 -0.82 4.64 16 39 H 0.11 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -67.23 303.13 0.91 -66.33 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.64 Total: 23.87 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 3.68 Total: -34.38 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -4.02 Total: -102.09 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.89 Total: 46.27 kcal Total: -67.23 0.91 -66.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.425 kcal (2) G-P(sol) polarization free energy of solvation -67.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds