Wall clock time and date at job start Mon Mar 30 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 N 1.46900 * 109.46732 * 119.99853 * 2 1 3 5 5 C 1.46900 * 111.00174 * 73.13974 * 4 2 1 6 6 C 1.50702 * 109.47191 * 66.04234 * 5 4 2 7 7 H 1.08001 * 119.99561 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00089 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99952 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99887 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47018 * 90.00465 * 10 8 6 12 12 H 1.48500 * 109.47189 * 210.00290 * 10 8 6 13 13 H 1.48499 * 109.47368 * 330.00564 * 10 8 6 14 14 C 1.46897 * 111.00026 * 309.18255 * 4 2 1 15 15 C 1.53009 * 109.46971 * 199.87449 * 14 4 2 16 16 C 1.50697 * 109.47095 * 174.79770 * 15 14 4 17 17 C 1.38647 * 120.78972 * 89.99852 * 16 15 14 18 18 C 1.38206 * 119.16570 * 180.02562 * 17 16 15 19 19 N 1.31874 * 120.76031 * 0.25802 * 18 17 16 20 20 C 1.31867 * 121.72812 * 359.47503 * 19 18 17 21 21 C 1.38215 * 120.76145 * 0.52635 * 20 19 18 22 22 H 1.09004 * 109.47163 * 300.00280 * 1 2 3 23 23 H 1.09000 * 109.46905 * 59.99890 * 1 2 3 24 24 H 1.08993 * 109.47456 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46849 * 239.99815 * 2 1 3 26 26 H 1.09001 * 109.46914 * 174.42999 * 3 2 1 27 27 H 1.09004 * 109.47033 * 294.42550 * 3 2 1 28 28 H 1.09000 * 109.47393 * 54.42500 * 3 2 1 29 29 H 1.08996 * 109.47147 * 186.04343 * 5 4 2 30 30 H 1.09003 * 109.46720 * 306.04493 * 5 4 2 31 31 H 0.96998 * 119.99881 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47228 * 79.87630 * 14 4 2 33 33 H 1.08997 * 109.47517 * 319.87803 * 14 4 2 34 34 H 1.08996 * 109.46854 * 54.79915 * 15 14 4 35 35 H 1.08992 * 109.46975 * 294.80102 * 15 14 4 36 36 H 1.08005 * 120.41909 * 0.04739 * 17 16 15 37 37 H 1.07998 * 119.62263 * 179.97438 * 18 17 16 38 38 H 1.07994 * 119.62035 * 180.26986 * 20 19 18 39 39 H 1.07998 * 120.41467 * 179.72514 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.8201 -2.1436 1.0880 6 6 2.6873 -2.6864 -0.0185 7 1 3.3235 -2.0200 -0.5822 8 6 2.6687 -4.0336 -0.3112 9 7 3.4259 -4.5073 -1.2765 10 14 1.5689 -5.1861 0.6642 11 1 0.2409 -5.2781 0.0062 12 1 2.1890 -6.5344 0.7183 13 1 1.4025 -4.6621 2.0437 14 6 1.3782 -0.1644 2.4109 15 6 2.2256 -0.5216 3.6338 16 6 1.6370 0.1275 4.8598 17 6 0.6849 -0.5304 5.6234 18 6 0.1671 0.0966 6.7409 19 7 0.5649 1.3073 7.0801 20 6 1.4719 1.9606 6.3805 21 6 2.0342 1.3971 5.2507 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1255 1.4440 0.0997 27 1 1.7605 1.9267 -0.9357 28 1 1.5975 1.9843 0.8358 29 1 2.0912 -2.6210 2.0295 30 1 0.7735 -2.3502 0.8639 31 1 3.4130 -5.4552 -1.4821 32 1 0.3854 -0.6018 2.5165 33 1 1.2912 0.9193 2.3331 34 1 3.2445 -0.1636 3.4868 35 1 2.2361 -1.6036 3.7650 36 1 0.3523 -1.5205 5.3485 37 1 -0.5752 -0.4089 7.3407 38 1 1.7760 2.9491 6.6917 39 1 2.7734 1.9390 4.6794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:35 Heat of formation + Delta-G solvation = 29.057405 kcal Electronic energy + Delta-G solvation = -18079.494717 eV Core-core repulsion = 15407.763394 eV Total energy + Delta-G solvation = -2671.731323 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16160 -38.04656 -34.30309 -32.74686 -31.23364 -31.19378 -29.23891 -26.71864 -26.59118 -23.55662 -23.45279 -21.88330 -21.23921 -18.64686 -16.78513 -16.63914 -16.34439 -15.60955 -15.23835 -14.62551 -14.37375 -13.90338 -13.79919 -13.45757 -13.25059 -12.99770 -12.55109 -12.19188 -12.07725 -11.73726 -11.67339 -11.58922 -11.22283 -10.87820 -10.75320 -10.60856 -10.24952 -9.86498 -9.84751 -9.50549 -9.48283 -9.18583 -9.17276 -8.59845 -7.39807 -6.07681 -4.04483 1.11691 1.26364 3.24698 3.33125 3.33635 3.79793 4.38882 4.42004 4.51447 4.77486 5.01372 5.12773 5.14761 5.24752 5.37159 5.47279 5.55338 5.60390 5.72428 5.76870 5.87471 5.91294 5.98847 6.02788 6.08735 6.19106 6.20922 6.38935 6.47563 6.52305 6.64222 6.71601 6.76191 6.94915 7.01917 7.60060 7.90582 7.93506 8.05204 8.63868 9.01323 9.54393 11.05530 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.006044 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.674537 B = 4631.350635 C = 5428.518350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.079 3.921 3 C -0.139 4.139 4 N -0.520 5.520 5 C 0.159 3.841 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.061 3.939 15 C -0.083 4.083 16 C -0.025 4.025 17 C -0.172 4.172 18 C 0.096 3.904 19 N -0.497 5.497 20 C 0.095 3.905 21 C -0.170 4.170 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.028 0.972 30 H -0.014 1.014 31 H 0.263 0.737 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 10.698 10.886 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.029 4.029 3 C -0.197 4.197 4 N -0.243 5.243 5 C 0.033 3.967 6 C -0.546 4.546 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.068 4.068 15 C -0.120 4.120 16 C -0.033 4.033 17 C -0.192 4.192 18 C -0.061 4.061 19 N -0.206 5.206 20 C -0.062 4.062 21 C -0.190 4.190 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.004 0.996 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.264 11.002 11.560 16.804 hybrid contribution -1.122 -1.406 -0.375 1.838 sum -6.386 9.596 11.185 16.061 Atomic orbital electron populations 1.22455 0.98849 1.01840 1.00833 1.21641 0.91569 0.94271 0.95452 1.21844 1.01789 0.95909 1.00169 1.62138 1.56122 1.06030 1.00039 1.20240 0.94902 0.83684 0.97919 1.21034 1.24239 0.93463 1.15838 0.90116 1.24887 0.95416 0.97996 0.94953 1.69889 1.39688 1.14028 1.30311 0.86906 0.81119 0.80767 0.81207 1.20398 1.21162 1.19248 1.21980 0.94828 0.99450 0.90522 1.20714 1.00249 1.00905 0.90178 1.20519 0.93581 0.93713 0.95535 1.22138 0.98472 1.01860 0.96727 1.22706 0.97774 0.91019 0.94589 1.67645 1.12648 1.08797 1.31512 1.22716 0.92442 0.99406 0.91630 1.22109 1.02217 0.96052 0.98652 0.93515 0.92962 0.92406 0.88274 0.91998 0.93150 0.93768 0.95412 0.99624 0.92682 0.95475 0.91534 0.89513 0.90326 0.84902 0.83053 0.83033 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.49 37.16 0.32 -2.65 16 2 C 0.08 1.44 2.76 -67.71 -0.19 1.25 16 3 C -0.14 -2.09 9.11 37.16 0.34 -1.75 16 4 N -0.52 -10.20 4.35 -228.08 -0.99 -11.19 16 5 C 0.16 3.68 3.52 -4.97 -0.02 3.66 16 6 C -0.51 -13.96 8.88 -34.44 -0.31 -14.27 16 7 H 0.08 2.43 7.46 -52.49 -0.39 2.03 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 10 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 14 C 0.06 0.98 3.50 -3.82 -0.01 0.97 16 15 C -0.08 -1.22 5.43 -27.88 -0.15 -1.38 16 16 C -0.02 -0.33 5.17 -104.32 -0.54 -0.86 16 17 C -0.17 -2.13 9.82 -39.44 -0.39 -2.52 16 18 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 19 N -0.50 -6.43 10.36 -13.25 -0.14 -6.57 16 20 C 0.09 1.08 11.18 -17.54 -0.20 0.89 16 21 C -0.17 -1.99 9.82 -39.44 -0.39 -2.37 16 22 H 0.05 0.70 6.66 -51.93 -0.35 0.35 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.04 6.71 -51.93 -0.35 0.70 16 25 H 0.10 2.10 6.61 -51.93 -0.34 1.76 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.60 6.59 -51.93 -0.34 0.26 16 29 H 0.03 0.65 5.79 -51.93 -0.30 0.35 16 30 H -0.01 -0.32 5.99 -51.93 -0.31 -0.64 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.03 0.45 7.34 -51.93 -0.38 0.07 16 33 H 0.07 0.99 6.02 -51.93 -0.31 0.68 16 34 H 0.09 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.08 1.26 6.93 -51.93 -0.36 0.90 16 36 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -30.22 310.38 -8.16 -38.38 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.98 Total: 0.84 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.82 Total: -16.23 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.36 Total: -44.13 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.22 -8.16 -38.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.437 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds