Wall clock time and date at job start Mon Mar 30 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 N 1.46900 * 109.46732 * 119.99853 * 2 1 3 5 5 C 1.46900 * 111.00174 * 73.13974 * 4 2 1 6 6 C 1.50702 * 109.47191 * 66.04234 * 5 4 2 7 7 H 1.08001 * 119.99561 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00089 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99952 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99887 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47018 * 90.00465 * 10 8 6 12 12 H 1.48500 * 109.47189 * 210.00290 * 10 8 6 13 13 H 1.48499 * 109.47368 * 330.00564 * 10 8 6 14 14 C 1.46897 * 111.00026 * 309.18255 * 4 2 1 15 15 C 1.53009 * 109.46971 * 199.87449 * 14 4 2 16 16 C 1.50697 * 109.47095 * 174.79770 * 15 14 4 17 17 C 1.38647 * 120.78972 * 89.99852 * 16 15 14 18 18 C 1.38206 * 119.16570 * 180.02562 * 17 16 15 19 19 N 1.31874 * 120.76031 * 0.25802 * 18 17 16 20 20 C 1.31867 * 121.72812 * 359.47503 * 19 18 17 21 21 C 1.38215 * 120.76145 * 0.52635 * 20 19 18 22 22 H 1.09004 * 109.47163 * 300.00280 * 1 2 3 23 23 H 1.09000 * 109.46905 * 59.99890 * 1 2 3 24 24 H 1.08993 * 109.47456 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46849 * 239.99815 * 2 1 3 26 26 H 1.09001 * 109.46914 * 174.42999 * 3 2 1 27 27 H 1.09004 * 109.47033 * 294.42550 * 3 2 1 28 28 H 1.09000 * 109.47393 * 54.42500 * 3 2 1 29 29 H 1.08996 * 109.47147 * 186.04343 * 5 4 2 30 30 H 1.09003 * 109.46720 * 306.04493 * 5 4 2 31 31 H 0.96998 * 119.99881 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47228 * 79.87630 * 14 4 2 33 33 H 1.08997 * 109.47517 * 319.87803 * 14 4 2 34 34 H 1.08996 * 109.46854 * 54.79915 * 15 14 4 35 35 H 1.08992 * 109.46975 * 294.80102 * 15 14 4 36 36 H 1.08005 * 120.41909 * 0.04739 * 17 16 15 37 37 H 1.07998 * 119.62263 * 179.97438 * 18 17 16 38 38 H 1.07994 * 119.62035 * 180.26986 * 20 19 18 39 39 H 1.07998 * 120.41467 * 179.72514 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.8201 -2.1436 1.0880 6 6 2.6873 -2.6864 -0.0185 7 1 3.3235 -2.0200 -0.5822 8 6 2.6687 -4.0336 -0.3112 9 7 3.4259 -4.5073 -1.2765 10 14 1.5689 -5.1861 0.6642 11 1 0.2409 -5.2781 0.0062 12 1 2.1890 -6.5344 0.7183 13 1 1.4025 -4.6621 2.0437 14 6 1.3782 -0.1644 2.4109 15 6 2.2256 -0.5216 3.6338 16 6 1.6370 0.1275 4.8598 17 6 0.6849 -0.5304 5.6234 18 6 0.1671 0.0966 6.7409 19 7 0.5649 1.3073 7.0801 20 6 1.4719 1.9606 6.3805 21 6 2.0342 1.3971 5.2507 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1255 1.4440 0.0997 27 1 1.7605 1.9267 -0.9357 28 1 1.5975 1.9843 0.8358 29 1 2.0912 -2.6210 2.0295 30 1 0.7735 -2.3502 0.8639 31 1 3.4130 -5.4552 -1.4821 32 1 0.3854 -0.6018 2.5165 33 1 1.2912 0.9193 2.3331 34 1 3.2445 -0.1636 3.4868 35 1 2.2361 -1.6036 3.7650 36 1 0.3523 -1.5205 5.3485 37 1 -0.5752 -0.4089 7.3407 38 1 1.7760 2.9491 6.6917 39 1 2.7734 1.9390 4.6794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:35 Heat of formation + Delta-G solvation = 10.011227 kcal Electronic energy + Delta-G solvation = -18080.320621 eV Core-core repulsion = 15407.763394 eV Total energy + Delta-G solvation = -2672.557228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08796 -39.50856 -35.41103 -34.81211 -32.68161 -32.07362 -30.74651 -28.20453 -28.00082 -24.86294 -24.33662 -23.66591 -22.33622 -20.17611 -18.83988 -17.64376 -17.34251 -16.79448 -16.49820 -16.10574 -16.00453 -15.21687 -14.84833 -14.73668 -14.55706 -14.44061 -14.28275 -13.48168 -13.35804 -13.22183 -12.94723 -12.67900 -12.64821 -12.57962 -12.33139 -12.00386 -11.80994 -11.72155 -11.37459 -11.22492 -10.76855 -10.44535 -10.38501 -10.04224 -8.95486 -8.27124 -6.28846 0.24796 0.31855 1.32691 1.34357 1.44535 2.33839 2.88420 3.06115 3.19338 3.63331 3.82689 3.89120 4.11443 4.18736 4.24941 4.26341 4.29446 4.46488 4.53347 4.61933 4.68233 4.75863 4.81984 4.82760 4.93247 4.97169 5.02806 5.05626 5.13829 5.16852 5.25668 5.39984 5.50121 5.53202 5.60391 5.83242 6.05165 6.45807 6.70775 6.77975 7.05833 7.34349 8.89639 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.006044 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.674537 B = 4631.350635 C = 5428.518350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.073 3.927 3 C -0.129 4.129 4 N -0.533 5.533 5 C 0.171 3.829 6 C -0.509 4.509 7 H 0.038 0.962 8 C 0.009 3.991 9 N -0.949 5.949 10 Si 0.940 3.060 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.248 1.248 14 C 0.066 3.934 15 C -0.075 4.075 16 C -0.038 4.038 17 C -0.180 4.180 18 C 0.092 3.908 19 N -0.516 5.516 20 C 0.092 3.908 21 C -0.170 4.170 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.029 0.971 30 H -0.014 1.014 31 H 0.265 0.735 32 H 0.026 0.974 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.139 0.861 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 11.984 12.884 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.035 4.035 3 C -0.187 4.187 4 N -0.257 5.257 5 C 0.044 3.956 6 C -0.548 4.548 7 H 0.056 0.944 8 C -0.188 4.188 9 N -0.590 5.590 10 Si 0.764 3.236 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.171 1.171 14 C -0.062 4.062 15 C -0.112 4.112 16 C -0.046 4.046 17 C -0.200 4.200 18 C -0.065 4.065 19 N -0.226 5.226 20 C -0.064 4.064 21 C -0.190 4.190 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.003 0.997 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.157 0.843 37 H 0.192 0.808 38 H 0.197 0.803 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.818 12.315 13.571 19.553 hybrid contribution -0.581 -1.706 -1.035 2.079 sum -7.400 10.608 12.536 18.012 Atomic orbital electron populations 1.22360 0.97123 1.00959 1.02707 1.21649 0.93006 0.95579 0.93271 1.21749 1.01129 0.93718 1.02072 1.62058 1.57479 1.04138 1.01992 1.19952 0.93559 0.86185 0.95918 1.21270 1.23870 0.93155 1.16469 0.94362 1.25783 0.97029 0.99920 0.96059 1.70046 1.41929 1.14571 1.32455 0.85820 0.79038 0.78236 0.80520 1.19549 1.20847 1.17128 1.22020 0.94648 1.00293 0.89239 1.20557 1.00024 1.00071 0.90589 1.20417 0.94420 0.94555 0.95232 1.22271 0.98484 1.02249 0.96978 1.23074 0.97971 0.90860 0.94548 1.67706 1.13365 1.09360 1.32161 1.23181 0.91707 1.00357 0.91167 1.22300 1.02289 0.95526 0.98842 0.91556 0.91121 0.94619 0.92596 0.93031 0.91373 0.91611 0.95296 0.99665 0.92571 0.95545 0.89599 0.89855 0.91921 0.84327 0.80821 0.80331 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.39 8.49 71.98 0.61 -4.78 16 2 C 0.07 2.65 2.76 44.92 0.12 2.77 16 3 C -0.13 -3.64 9.11 71.98 0.66 -2.98 16 4 N -0.53 -20.73 4.35 -875.52 -3.81 -24.54 16 5 C 0.17 7.94 3.52 85.56 0.30 8.24 16 6 C -0.51 -29.00 8.88 25.60 0.23 -28.77 16 7 H 0.04 2.44 7.46 -2.91 -0.02 2.42 16 8 C 0.01 0.53 5.47 84.65 0.46 0.99 16 9 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 10 Si 0.94 43.72 27.47 68.60 1.88 45.61 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 14 C 0.07 2.01 3.50 86.31 0.30 2.31 16 15 C -0.07 -2.10 5.43 29.85 0.16 -1.94 16 16 C -0.04 -0.90 5.17 -19.67 -0.10 -1.01 16 17 C -0.18 -4.09 9.82 22.36 0.22 -3.87 16 18 C 0.09 1.96 11.18 84.68 0.95 2.90 16 19 N -0.52 -12.06 10.36 -195.84 -2.03 -14.09 16 20 C 0.09 1.84 11.18 84.68 0.95 2.78 16 21 C -0.17 -3.50 9.82 22.36 0.22 -3.28 16 22 H 0.07 1.80 6.66 -2.38 -0.02 1.78 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.03 1.25 6.71 -2.39 -0.02 1.23 16 25 H 0.06 2.48 6.61 -2.39 -0.02 2.47 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.06 1.57 6.59 -2.39 -0.02 1.55 16 29 H 0.03 1.34 5.79 -2.39 -0.01 1.33 16 30 H -0.01 -0.66 5.99 -2.39 -0.01 -0.68 16 31 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.03 0.82 7.34 -2.39 -0.02 0.80 16 33 H 0.09 2.28 6.02 -2.39 -0.01 2.27 16 34 H 0.08 2.38 8.10 -2.39 -0.02 2.36 16 35 H 0.06 1.95 6.93 -2.39 -0.02 1.93 16 36 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 38 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -66.81 310.38 2.38 -64.43 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.96 Total: 14.07 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 5.08 Total: -26.61 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -5.54 Total: -97.49 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Total: -66.81 2.38 -64.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.441 kcal (2) G-P(sol) polarization free energy of solvation -66.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds