Wall clock time and date at job start Mon Mar 30 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47425 * 2 1 4 4 N 1.46901 * 109.47403 * 120.00518 * 2 1 3 5 5 C 1.46895 * 111.00256 * 150.23628 * 4 2 1 6 6 C 1.50700 * 109.47670 * 288.00061 * 5 4 2 7 7 H 1.07998 * 119.99445 * 4.84204 * 6 5 4 8 8 C 1.37877 * 120.00251 * 184.84363 * 6 5 4 9 9 N 1.31510 * 120.00130 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99891 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46924 * 90.00109 * 10 8 6 12 12 H 1.48494 * 109.47047 * 209.99885 * 10 8 6 13 13 H 1.48499 * 109.47122 * 330.00507 * 10 8 6 14 14 C 1.46896 * 111.00041 * 274.19653 * 4 2 1 15 15 C 1.53003 * 109.47088 * 76.90703 * 14 4 2 16 16 C 1.50707 * 109.46990 * 173.47085 * 15 14 4 17 17 C 1.38217 * 119.61895 * 124.99877 * 16 15 14 18 18 C 1.38625 * 119.16277 * 179.97438 * 17 16 15 19 19 C 1.38671 * 118.42205 * 0.02562 * 18 17 16 20 20 C 1.38180 * 119.15982 * 0.02562 * 19 18 17 21 21 N 1.31860 * 119.61647 * 304.72546 * 16 15 14 22 22 H 1.09000 * 109.46904 * 314.07846 * 1 2 3 23 23 H 1.08998 * 109.47276 * 74.08171 * 1 2 3 24 24 H 1.08998 * 109.47380 * 194.08209 * 1 2 3 25 25 H 1.09008 * 109.47142 * 240.00158 * 2 1 3 26 26 H 1.08997 * 109.47339 * 168.04760 * 3 2 1 27 27 H 1.08994 * 109.47266 * 288.05612 * 3 2 1 28 28 H 1.09004 * 109.46920 * 48.05878 * 3 2 1 29 29 H 1.09007 * 109.46992 * 48.00121 * 5 4 2 30 30 H 1.09000 * 109.47210 * 167.99502 * 5 4 2 31 31 H 0.96998 * 119.99990 * 179.97438 * 9 8 6 32 32 H 1.09007 * 109.47009 * 316.90961 * 14 4 2 33 33 H 1.08999 * 109.47255 * 196.91236 * 14 4 2 34 34 H 1.08996 * 109.46945 * 53.47369 * 15 14 4 35 35 H 1.08999 * 109.47034 * 293.46719 * 15 14 4 36 36 H 1.08001 * 120.42238 * 359.95941 * 17 16 15 37 37 H 1.08000 * 120.79400 * 180.02562 * 18 17 16 38 38 H 1.08005 * 120.42531 * 180.02562 * 19 18 17 39 39 H 1.08006 * 119.62037 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.3176 -1.3319 0.9451 6 6 3.1212 -2.5298 0.0520 7 1 2.1446 -2.7450 -0.3557 8 6 4.1884 -3.3510 -0.2445 9 7 4.0171 -4.3960 -1.0242 10 14 5.8777 -2.9783 0.4603 11 1 6.0315 -3.6660 1.7674 12 1 6.9228 -3.4598 -0.4783 13 1 6.0217 -1.5128 0.6521 14 6 2.1006 0.2269 2.3421 15 6 0.6978 0.4670 2.9038 16 6 0.7957 1.2790 4.1696 17 6 0.0852 2.4594 4.2806 18 6 0.1818 3.1986 5.4494 19 6 0.9936 2.7210 6.4672 20 6 1.6748 1.5329 6.2837 21 7 1.5540 0.8525 5.1604 22 1 -0.3633 0.7149 0.7383 23 1 -0.3634 0.2818 -0.9882 24 1 -0.3634 -0.9967 0.2500 25 1 1.8933 -0.5138 -0.8901 26 1 3.1090 1.4499 0.2128 27 1 1.8609 1.8912 -0.9770 28 1 1.5135 2.0140 0.7644 29 1 3.9837 -0.6203 0.4572 30 1 3.7566 -1.6513 1.8902 31 1 4.7680 -4.9735 -1.2331 32 1 2.5286 1.1749 2.0161 33 1 2.7320 -0.2098 3.1159 34 1 0.2250 -0.4905 3.1221 35 1 0.1004 1.0084 2.1702 36 1 -0.5372 2.8017 3.4671 37 1 -0.3622 4.1244 5.5646 38 1 1.0922 3.2707 7.3917 39 1 2.3088 1.1538 7.0717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:26 Heat of formation + Delta-G solvation = 42.075678 kcal Electronic energy + Delta-G solvation = -18115.319620 eV Core-core repulsion = 15444.152812 eV Total energy + Delta-G solvation = -2671.166809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23064 -38.04952 -33.40228 -32.67003 -32.29772 -31.02810 -29.19438 -26.95622 -26.35018 -23.70828 -23.25994 -21.65717 -21.03142 -18.80327 -16.87882 -16.64528 -16.27011 -15.63941 -15.46638 -14.59692 -14.22630 -14.04744 -13.46505 -13.18717 -13.15765 -12.87237 -12.39557 -12.18902 -12.01721 -11.97610 -11.65224 -11.57813 -10.91349 -10.82244 -10.62673 -10.37649 -10.04283 -9.95118 -9.84222 -9.79083 -9.33302 -9.21576 -8.92695 -8.50323 -7.25144 -5.99164 -3.95156 1.07991 1.23865 3.33488 3.40427 3.43259 3.78037 4.32205 4.47885 4.59018 4.75364 4.97302 5.00114 5.08742 5.33491 5.37289 5.52319 5.59807 5.64295 5.69286 5.74890 5.92364 5.99435 6.03316 6.09184 6.13975 6.24507 6.32379 6.40879 6.46775 6.55281 6.69226 6.80558 6.82708 7.01237 7.09647 7.70563 8.02657 8.05030 8.18021 8.74082 9.10874 9.63564 11.14208 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.005605 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.607501 B = 4994.606189 C = 5688.501763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.076 3.924 3 C -0.175 4.175 4 N -0.520 5.520 5 C 0.163 3.837 6 C -0.503 4.503 7 H 0.081 0.919 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.053 3.947 15 C -0.073 4.073 16 C 0.144 3.856 17 C -0.176 4.176 18 C -0.076 4.076 19 C -0.189 4.189 20 C 0.102 3.898 21 N -0.478 5.478 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.051 0.949 29 H -0.013 1.013 30 H 0.023 0.977 31 H 0.262 0.738 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 16.247 10.912 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.234 4.234 4 N -0.244 5.244 5 C 0.037 3.963 6 C -0.542 4.542 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.542 5.542 10 Si 0.701 3.299 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.194 1.194 14 C -0.076 4.076 15 C -0.111 4.111 16 C 0.006 3.994 17 C -0.195 4.195 18 C -0.102 4.102 19 C -0.209 4.209 20 C -0.055 4.055 21 N -0.187 5.187 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.004 0.996 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.078 14.919 10.841 19.753 hybrid contribution 1.132 1.594 0.384 1.992 sum -5.947 16.513 11.225 20.833 Atomic orbital electron populations 1.22035 0.95700 1.02166 0.99965 1.21664 0.94857 0.91517 0.95254 1.22430 1.01070 0.98959 1.00915 1.62101 1.30210 1.28867 1.03187 1.20191 0.85464 0.94319 0.96327 1.21050 0.97550 1.07685 1.27895 0.90142 1.24883 0.98557 0.94870 0.95022 1.69894 1.31488 1.15570 1.37201 0.86892 0.84764 0.79010 0.79263 1.20152 1.21320 1.19402 1.22141 0.95019 0.95889 0.94526 1.20906 0.99628 0.99781 0.90786 1.21569 0.90733 0.92362 0.94759 1.22019 1.02000 0.96466 0.99060 1.21546 0.96539 0.99053 0.93025 1.22085 0.99825 0.98657 1.00360 1.22800 0.96462 0.91435 0.94825 1.67581 1.17260 1.33369 1.00534 0.93277 0.93539 0.91625 0.89033 0.92962 0.93008 0.92990 0.99556 0.95873 0.92773 0.94664 0.90776 0.89000 0.89839 0.84953 0.85172 0.85178 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.80 37.16 0.33 -1.87 16 2 C 0.08 1.41 2.65 -67.72 -0.18 1.23 16 3 C -0.18 -2.77 7.76 37.16 0.29 -2.48 16 4 N -0.52 -10.89 4.28 -228.08 -0.98 -11.86 16 5 C 0.16 4.04 3.70 -4.98 -0.02 4.02 16 6 C -0.50 -14.46 8.92 -34.44 -0.31 -14.77 16 7 H 0.08 2.50 7.94 -52.49 -0.42 2.09 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 10 Si 0.87 22.00 27.38 -169.99 -4.65 17.34 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.27 -6.58 6.68 56.52 0.38 -6.20 16 14 C 0.05 0.95 4.43 -3.83 -0.02 0.93 16 15 C -0.07 -1.09 5.01 -27.88 -0.14 -1.23 16 16 C 0.14 2.02 6.17 -82.58 -0.51 1.51 16 17 C -0.18 -1.98 9.71 -39.45 -0.38 -2.36 16 18 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 16 19 C -0.19 -1.83 10.11 -39.44 -0.40 -2.23 16 20 C 0.10 1.20 11.18 -17.55 -0.20 1.01 16 21 N -0.48 -7.17 9.77 -9.47 -0.09 -7.27 16 22 H 0.05 0.66 5.00 -51.93 -0.26 0.40 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.09 1.97 7.00 -51.92 -0.36 1.61 16 26 H 0.05 0.89 7.07 -51.93 -0.37 0.53 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.73 6.20 -51.93 -0.32 0.41 16 29 H -0.01 -0.33 6.92 -51.92 -0.36 -0.69 16 30 H 0.02 0.59 6.83 -51.93 -0.35 0.23 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.04 0.61 5.13 -51.92 -0.27 0.34 16 33 H 0.07 1.45 7.24 -51.93 -0.38 1.07 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.10 4.30 -51.93 -0.22 0.88 16 36 H 0.13 1.21 7.95 -52.49 -0.42 0.79 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 307.02 15.07 4.63 4.63 Total: -1.00 -31.90 307.02 -8.20 -40.10 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.84 Total: -0.28 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -2.03 Total: -15.47 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.30 Total: -46.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.65 Total: 17.34 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.90 -8.20 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.172 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds