Wall clock time and date at job start Mon Mar 30 2020 06:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47425 * 2 1 4 4 N 1.46901 * 109.47403 * 120.00518 * 2 1 3 5 5 C 1.46895 * 111.00256 * 150.23628 * 4 2 1 6 6 C 1.50700 * 109.47670 * 288.00061 * 5 4 2 7 7 H 1.07998 * 119.99445 * 4.84204 * 6 5 4 8 8 C 1.37877 * 120.00251 * 184.84363 * 6 5 4 9 9 N 1.31510 * 120.00130 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99891 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46924 * 90.00109 * 10 8 6 12 12 H 1.48494 * 109.47047 * 209.99885 * 10 8 6 13 13 H 1.48499 * 109.47122 * 330.00507 * 10 8 6 14 14 C 1.46896 * 111.00041 * 274.19653 * 4 2 1 15 15 C 1.53003 * 109.47088 * 76.90703 * 14 4 2 16 16 C 1.50707 * 109.46990 * 173.47085 * 15 14 4 17 17 C 1.38217 * 119.61895 * 124.99877 * 16 15 14 18 18 C 1.38625 * 119.16277 * 179.97438 * 17 16 15 19 19 C 1.38671 * 118.42205 * 0.02562 * 18 17 16 20 20 C 1.38180 * 119.15982 * 0.02562 * 19 18 17 21 21 N 1.31860 * 119.61647 * 304.72546 * 16 15 14 22 22 H 1.09000 * 109.46904 * 314.07846 * 1 2 3 23 23 H 1.08998 * 109.47276 * 74.08171 * 1 2 3 24 24 H 1.08998 * 109.47380 * 194.08209 * 1 2 3 25 25 H 1.09008 * 109.47142 * 240.00158 * 2 1 3 26 26 H 1.08997 * 109.47339 * 168.04760 * 3 2 1 27 27 H 1.08994 * 109.47266 * 288.05612 * 3 2 1 28 28 H 1.09004 * 109.46920 * 48.05878 * 3 2 1 29 29 H 1.09007 * 109.46992 * 48.00121 * 5 4 2 30 30 H 1.09000 * 109.47210 * 167.99502 * 5 4 2 31 31 H 0.96998 * 119.99990 * 179.97438 * 9 8 6 32 32 H 1.09007 * 109.47009 * 316.90961 * 14 4 2 33 33 H 1.08999 * 109.47255 * 196.91236 * 14 4 2 34 34 H 1.08996 * 109.46945 * 53.47369 * 15 14 4 35 35 H 1.08999 * 109.47034 * 293.46719 * 15 14 4 36 36 H 1.08001 * 120.42238 * 359.95941 * 17 16 15 37 37 H 1.08000 * 120.79400 * 180.02562 * 18 17 16 38 38 H 1.08005 * 120.42531 * 180.02562 * 19 18 17 39 39 H 1.08006 * 119.62037 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.3176 -1.3319 0.9451 6 6 3.1212 -2.5298 0.0520 7 1 2.1446 -2.7450 -0.3557 8 6 4.1884 -3.3510 -0.2445 9 7 4.0171 -4.3960 -1.0242 10 14 5.8777 -2.9783 0.4603 11 1 6.0315 -3.6660 1.7674 12 1 6.9228 -3.4598 -0.4783 13 1 6.0217 -1.5128 0.6521 14 6 2.1006 0.2269 2.3421 15 6 0.6978 0.4670 2.9038 16 6 0.7957 1.2790 4.1696 17 6 0.0852 2.4594 4.2806 18 6 0.1818 3.1986 5.4494 19 6 0.9936 2.7210 6.4672 20 6 1.6748 1.5329 6.2837 21 7 1.5540 0.8525 5.1604 22 1 -0.3633 0.7149 0.7383 23 1 -0.3634 0.2818 -0.9882 24 1 -0.3634 -0.9967 0.2500 25 1 1.8933 -0.5138 -0.8901 26 1 3.1090 1.4499 0.2128 27 1 1.8609 1.8912 -0.9770 28 1 1.5135 2.0140 0.7644 29 1 3.9837 -0.6203 0.4572 30 1 3.7566 -1.6513 1.8902 31 1 4.7680 -4.9735 -1.2331 32 1 2.5286 1.1749 2.0161 33 1 2.7320 -0.2098 3.1159 34 1 0.2250 -0.4905 3.1221 35 1 0.1004 1.0084 2.1702 36 1 -0.5372 2.8017 3.4671 37 1 -0.3622 4.1244 5.5646 38 1 1.0922 3.2707 7.3917 39 1 2.3088 1.1538 7.0717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:25 Heat of formation + Delta-G solvation = 20.870332 kcal Electronic energy + Delta-G solvation = -18116.239153 eV Core-core repulsion = 15444.152812 eV Total energy + Delta-G solvation = -2672.086342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13456 -39.55435 -35.03693 -34.22585 -33.18254 -32.70117 -30.55193 -28.36953 -27.95984 -24.79375 -24.24139 -23.56456 -22.18257 -20.32473 -18.85777 -17.79428 -17.28373 -16.95964 -16.52652 -16.19630 -15.89906 -15.20484 -14.88286 -14.55376 -14.44685 -14.08715 -13.92642 -13.68647 -13.51269 -13.16242 -13.07405 -12.81775 -12.58972 -12.40632 -12.09492 -11.99265 -11.86945 -11.54120 -11.44660 -11.18301 -10.77535 -10.74377 -10.23582 -9.82560 -8.90689 -8.28143 -6.29717 0.23842 0.44823 1.32431 1.33168 1.44092 2.33447 2.89483 3.04178 3.19242 3.51821 3.88210 4.05160 4.11113 4.21948 4.27758 4.31446 4.39235 4.43973 4.55729 4.61427 4.74473 4.78649 4.81803 4.87708 4.97121 4.97897 5.05443 5.09305 5.12506 5.23873 5.32923 5.34399 5.50274 5.54484 5.62433 5.88497 6.06199 6.51553 6.70643 6.76752 7.17675 7.33348 8.88717 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.005605 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.607501 B = 4994.606189 C = 5688.501763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 C -0.166 4.166 4 N -0.537 5.537 5 C 0.175 3.825 6 C -0.509 4.509 7 H 0.039 0.961 8 C 0.010 3.990 9 N -0.947 5.947 10 Si 0.943 3.057 11 H -0.268 1.268 12 H -0.278 1.278 13 H -0.256 1.256 14 C 0.060 3.940 15 C -0.060 4.060 16 C 0.114 3.886 17 C -0.174 4.174 18 C -0.074 4.074 19 C -0.178 4.178 20 C 0.081 3.919 21 N -0.522 5.522 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.076 0.924 29 H -0.016 1.016 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.677 19.590 12.580 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.038 4.038 3 C -0.224 4.224 4 N -0.260 5.260 5 C 0.048 3.952 6 C -0.547 4.547 7 H 0.057 0.943 8 C -0.187 4.187 9 N -0.588 5.588 10 Si 0.767 3.233 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.181 1.181 14 C -0.069 4.069 15 C -0.098 4.098 16 C -0.023 4.023 17 C -0.194 4.194 18 C -0.100 4.100 19 C -0.197 4.197 20 C -0.076 4.076 21 N -0.232 5.232 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.002 0.998 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.182 0.818 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.470 18.281 12.515 23.380 hybrid contribution 1.150 0.575 -0.103 1.290 sum -6.320 18.856 12.412 23.443 Atomic orbital electron populations 1.21955 0.93221 1.01798 1.02025 1.21704 0.96816 0.92684 0.92561 1.22324 1.00090 0.97029 1.02969 1.62055 1.27936 1.30873 1.05156 1.19897 0.87528 0.93038 0.94766 1.21248 0.95937 1.09235 1.28291 0.94253 1.25776 1.03047 0.94570 0.95351 1.70038 1.33045 1.16899 1.38837 0.85778 0.79302 0.79529 0.78699 1.19311 1.20354 1.18051 1.22104 0.97012 0.95164 0.92570 1.20706 0.97394 0.99502 0.92167 1.21427 0.92778 0.93799 0.94315 1.22259 1.01311 0.95286 1.00524 1.22015 0.96062 0.99894 0.92019 1.22477 0.98138 0.97549 1.01582 1.23184 0.97474 0.92511 0.94409 1.67460 1.18636 1.35190 1.01934 0.90431 0.91607 0.93836 0.93127 0.94587 0.91001 0.90537 0.99805 0.96474 0.92459 0.93604 0.93075 0.91162 0.87857 0.82674 0.81555 0.81842 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.80 71.98 0.63 -3.38 16 2 C 0.07 2.65 2.65 44.91 0.12 2.77 16 3 C -0.17 -4.95 7.76 71.98 0.56 -4.39 16 4 N -0.54 -23.01 4.28 -875.52 -3.75 -26.76 16 5 C 0.17 8.91 3.70 85.56 0.32 9.23 16 6 C -0.51 -30.59 8.92 25.60 0.23 -30.36 16 7 H 0.04 2.62 7.94 -2.91 -0.02 2.59 16 8 C 0.01 0.58 5.47 84.66 0.46 1.05 16 9 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 10 Si 0.94 46.12 27.38 68.60 1.88 48.00 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.26 -11.91 6.68 99.48 0.66 -11.25 16 14 C 0.06 2.14 4.43 86.30 0.38 2.53 16 15 C -0.06 -1.75 5.01 29.85 0.15 -1.60 16 16 C 0.11 3.05 6.17 42.55 0.26 3.31 16 17 C -0.17 -3.35 9.71 22.36 0.22 -3.14 16 18 C -0.07 -1.11 10.18 22.47 0.23 -0.88 16 19 C -0.18 -2.79 10.11 22.36 0.23 -2.57 16 20 C 0.08 1.78 11.18 84.67 0.95 2.72 16 21 N -0.52 -15.39 9.77 -183.88 -1.80 -17.19 16 22 H 0.08 1.88 5.00 -2.39 -0.01 1.87 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 2.28 7.00 -2.38 -0.02 2.27 16 26 H 0.04 1.18 7.07 -2.39 -0.02 1.17 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.08 1.91 6.20 -2.39 -0.01 1.89 16 29 H -0.02 -0.80 6.92 -2.38 -0.02 -0.81 16 30 H 0.02 0.89 6.83 -2.39 -0.02 0.87 16 31 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 32 H 0.05 1.54 5.13 -2.38 -0.01 1.53 16 33 H 0.05 2.05 7.24 -2.39 -0.02 2.03 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.10 2.49 4.30 -2.39 -0.01 2.47 16 36 H 0.16 2.16 7.95 -2.91 -0.02 2.14 16 37 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -73.14 307.02 2.35 -70.79 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.98 Total: 10.29 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 4.73 Total: -24.71 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -5.24 Total: -104.37 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.00 kcal Total: -73.14 2.35 -70.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.660 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds