Wall clock time and date at job start Mon Mar 30 2020 06:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46940 * 2 1 4 4 C 1.52998 * 109.47551 * 120.00387 * 2 1 3 5 5 N 1.46899 * 109.47359 * 66.63799 * 4 2 1 6 6 C 1.46894 * 111.00200 * 158.74141 * 5 4 2 7 7 C 1.50707 * 109.47357 * 288.09505 * 6 5 4 8 8 H 1.07994 * 119.99537 * 3.75787 * 7 6 5 9 9 C 1.37871 * 119.99992 * 183.75853 * 7 6 5 10 10 N 1.31509 * 120.00200 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99889 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46963 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47016 * 119.99848 * 11 9 7 14 14 H 1.48501 * 109.47275 * 239.99959 * 11 9 7 15 15 C 1.40023 * 110.99809 * 282.70191 * 5 4 2 16 16 C 1.38659 * 120.09199 * 305.97698 * 15 5 4 17 17 C 1.38271 * 119.99471 * 180.02562 * 16 15 5 18 18 C 1.38256 * 120.19573 * 359.74682 * 17 16 15 19 19 C 1.38265 * 120.18980 * 0.50840 * 18 17 16 20 20 C 1.38663 * 119.99885 * 359.49286 * 19 18 17 21 21 N 1.40016 * 120.09542 * 180.27120 * 20 19 18 22 22 H 1.09004 * 109.47224 * 290.33440 * 1 2 3 23 23 H 1.09000 * 109.47779 * 50.33902 * 1 2 3 24 24 H 1.09004 * 109.47035 * 170.33776 * 1 2 3 25 25 H 1.09000 * 109.46856 * 240.00610 * 2 1 3 26 26 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46938 * 300.00560 * 3 2 1 28 28 H 1.09000 * 109.46848 * 60.00605 * 3 2 1 29 29 H 1.09001 * 109.46863 * 306.63532 * 4 2 1 30 30 H 1.09001 * 109.47319 * 186.64325 * 4 2 1 31 31 H 1.09003 * 109.47268 * 48.09521 * 6 5 4 32 32 H 1.09006 * 109.47063 * 168.09220 * 6 5 4 33 33 H 0.97004 * 120.00105 * 180.02562 * 10 9 7 34 34 H 1.08003 * 120.00171 * 0.02562 * 16 15 5 35 35 H 1.08008 * 119.90037 * 179.97438 * 17 16 15 36 36 H 1.07994 * 119.90344 * 180.25677 * 18 17 16 37 37 H 1.07994 * 119.99890 * 179.76706 * 19 18 17 38 38 H 0.96997 * 120.00262 * 0.02562 * 21 20 19 39 39 H 0.96998 * 120.00399 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6856 -2.1448 1.1718 6 6 2.5499 -2.9508 2.0442 7 6 3.9337 -3.0238 1.4517 8 1 4.1659 -2.4723 0.5527 9 6 4.9031 -3.7947 2.0574 10 7 4.6204 -4.4658 3.1525 11 14 6.6181 -3.8858 1.3227 12 1 6.6777 -3.0459 0.0994 13 1 7.6078 -3.3901 2.3127 14 1 6.9320 -5.2941 0.9714 15 6 0.3346 -2.3430 1.4819 16 6 -0.1840 -1.8566 2.6724 17 6 -1.5183 -2.0540 2.9769 18 6 -2.3400 -2.7311 2.0950 19 6 -1.8300 -3.2240 0.9082 20 6 -0.4931 -3.0307 0.5947 21 7 0.0242 -3.5240 -0.6092 22 1 -0.3634 0.3571 0.9637 23 1 -0.3635 0.6559 -0.7911 24 1 -0.3633 -1.0131 -0.1725 25 1 1.8932 -0.5137 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.5830 -0.2807 2.1352 30 1 3.1236 -0.6195 1.3105 31 1 2.6009 -2.4902 3.0308 32 1 2.1393 -3.9566 2.1335 33 1 5.3026 -5.0079 3.5789 34 1 0.4542 -1.3237 3.3617 35 1 -1.9205 -1.6749 3.9048 36 1 -3.3824 -2.8789 2.3357 37 1 -2.4738 -3.7557 0.2233 38 1 -0.5528 -4.0015 -1.2256 39 1 0.9596 -3.3883 -0.8270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043416367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:30 Heat of formation + Delta-G solvation = 22.904674 kcal Electronic energy + Delta-G solvation = -18823.101816 eV Core-core repulsion = 16151.103690 eV Total energy + Delta-G solvation = -2671.998126 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.64616 -36.55014 -34.03375 -33.84973 -32.40517 -29.39204 -28.05205 -26.78334 -26.58200 -24.68874 -22.51371 -21.48407 -20.29247 -19.33100 -16.95498 -16.38241 -15.99853 -15.53684 -14.86220 -14.38567 -13.98061 -13.94222 -13.44612 -13.22876 -13.13753 -12.42648 -12.32991 -12.09750 -11.88746 -11.68774 -11.35307 -11.16662 -10.90520 -10.82145 -10.57706 -10.40095 -10.21206 -10.07902 -9.96449 -9.83252 -9.27833 -8.45763 -8.14484 -7.39674 -6.81035 -6.03209 -4.05194 1.92058 2.16112 3.29454 3.37203 3.41326 4.36685 4.41116 4.50344 4.83512 5.32063 5.37310 5.41327 5.42683 5.53754 5.61033 5.82543 5.95756 5.97705 6.09815 6.15878 6.22797 6.28921 6.38611 6.41158 6.48035 6.63686 6.73262 6.83732 6.85275 6.99081 7.12668 7.25094 7.36413 7.43656 7.81854 7.99609 8.16627 8.22799 8.42792 8.68083 9.02554 9.58899 11.07113 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.007735 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.453596 B = 3619.193722 C = 4272.246001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.144 4.144 4 C 0.069 3.931 5 N -0.500 5.500 6 C 0.202 3.798 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.050 3.950 16 C -0.110 4.110 17 C -0.175 4.175 18 C -0.091 4.091 19 C -0.207 4.207 20 C 0.233 3.767 21 N -0.868 5.868 22 H 0.045 0.955 23 H 0.037 0.963 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.026 0.974 30 H 0.083 0.917 31 H -0.008 1.008 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.387 0.613 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.454 6.230 -5.175 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.058 4.058 5 N -0.222 5.222 6 C 0.078 3.922 7 C -0.545 4.545 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.049 4.049 16 C -0.131 4.131 17 C -0.196 4.196 18 C -0.110 4.110 19 C -0.231 4.231 20 C 0.126 3.874 21 N -0.407 5.407 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.010 0.990 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.214 0.786 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.243 5.958 -5.503 13.065 hybrid contribution 0.966 -0.066 0.338 1.026 sum -9.277 5.891 -5.164 12.143 Atomic orbital electron populations 1.22084 0.95873 1.02428 1.00273 1.21087 0.95441 0.94825 0.99479 1.21804 1.00946 0.96570 1.00843 1.22168 1.01192 0.87359 0.95072 1.59699 0.99275 1.07394 1.55788 1.19764 0.90910 0.92084 0.89394 1.21186 0.94479 1.28095 1.10739 0.91776 1.24984 0.98983 0.95572 0.95038 1.69976 1.34000 1.30495 1.19085 0.86471 0.84229 0.77760 0.79112 1.19679 1.21144 1.21097 1.18509 0.91384 1.01887 0.93128 1.21423 0.95543 0.99837 0.96291 1.20660 0.94017 1.04675 1.00227 1.20669 0.98695 0.97739 0.93874 1.20386 0.93793 1.08996 0.99940 1.17599 0.91219 0.92117 0.86418 1.42498 1.14607 1.64045 1.19521 0.93540 0.94411 0.91035 0.90997 0.92761 0.93335 0.93249 0.95541 0.89904 0.99029 0.95075 0.92989 0.86865 0.87391 0.87132 0.86955 0.78624 0.75820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 7.99 37.16 0.30 -1.99 16 2 C -0.09 -1.43 3.11 -90.62 -0.28 -1.71 16 3 C -0.14 -1.98 9.18 37.16 0.34 -1.64 16 4 C 0.07 1.32 4.38 -3.83 -0.02 1.31 16 5 N -0.50 -10.42 3.53 -172.26 -0.61 -11.03 16 6 C 0.20 5.19 4.42 -4.98 -0.02 5.17 16 7 C -0.51 -13.85 8.39 -34.44 -0.29 -14.14 16 8 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 11 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.05 0.95 2.53 -83.50 -0.21 0.74 16 16 C -0.11 -2.01 8.22 -39.41 -0.32 -2.33 16 17 C -0.17 -2.78 10.04 -39.56 -0.40 -3.18 16 18 C -0.09 -1.34 10.04 -39.56 -0.40 -1.74 16 19 C -0.21 -3.16 9.89 -39.41 -0.39 -3.55 16 20 C 0.23 3.99 4.75 -83.50 -0.40 3.60 16 21 N -0.87 -13.22 9.03 32.54 0.29 -12.93 16 22 H 0.05 0.72 7.73 -51.93 -0.40 0.32 16 23 H 0.04 0.52 8.12 -51.93 -0.42 0.09 16 24 H 0.07 1.16 4.49 -51.93 -0.23 0.93 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.50 6.26 -51.93 -0.33 0.17 16 30 H 0.08 1.73 6.97 -51.93 -0.36 1.37 16 31 H -0.01 -0.22 8.05 -51.93 -0.42 -0.64 16 32 H 0.03 0.89 7.98 -51.93 -0.41 0.48 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 34 H 0.11 2.11 7.09 -52.48 -0.37 1.74 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 36 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.39 4.68 8.85 -40.82 -0.36 4.31 16 39 H 0.41 6.88 8.11 -40.82 -0.33 6.55 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -29.08 311.38 -8.22 -37.31 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.13 Total: 9.37 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.19 Total: -18.01 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.42 Total: -49.74 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.08 -8.22 -37.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043416367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.210 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds