Wall clock time and date at job start Mon Mar 30 2020 06:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46940 * 2 1 4 4 C 1.52998 * 109.47551 * 120.00387 * 2 1 3 5 5 N 1.46899 * 109.47359 * 66.63799 * 4 2 1 6 6 C 1.46894 * 111.00200 * 158.74141 * 5 4 2 7 7 C 1.50707 * 109.47357 * 288.09505 * 6 5 4 8 8 H 1.07994 * 119.99537 * 3.75787 * 7 6 5 9 9 C 1.37871 * 119.99992 * 183.75853 * 7 6 5 10 10 N 1.31509 * 120.00200 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99889 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46963 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47016 * 119.99848 * 11 9 7 14 14 H 1.48501 * 109.47275 * 239.99959 * 11 9 7 15 15 C 1.40023 * 110.99809 * 282.70191 * 5 4 2 16 16 C 1.38659 * 120.09199 * 305.97698 * 15 5 4 17 17 C 1.38271 * 119.99471 * 180.02562 * 16 15 5 18 18 C 1.38256 * 120.19573 * 359.74682 * 17 16 15 19 19 C 1.38265 * 120.18980 * 0.50840 * 18 17 16 20 20 C 1.38663 * 119.99885 * 359.49286 * 19 18 17 21 21 N 1.40016 * 120.09542 * 180.27120 * 20 19 18 22 22 H 1.09004 * 109.47224 * 290.33440 * 1 2 3 23 23 H 1.09000 * 109.47779 * 50.33902 * 1 2 3 24 24 H 1.09004 * 109.47035 * 170.33776 * 1 2 3 25 25 H 1.09000 * 109.46856 * 240.00610 * 2 1 3 26 26 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46938 * 300.00560 * 3 2 1 28 28 H 1.09000 * 109.46848 * 60.00605 * 3 2 1 29 29 H 1.09001 * 109.46863 * 306.63532 * 4 2 1 30 30 H 1.09001 * 109.47319 * 186.64325 * 4 2 1 31 31 H 1.09003 * 109.47268 * 48.09521 * 6 5 4 32 32 H 1.09006 * 109.47063 * 168.09220 * 6 5 4 33 33 H 0.97004 * 120.00105 * 180.02562 * 10 9 7 34 34 H 1.08003 * 120.00171 * 0.02562 * 16 15 5 35 35 H 1.08008 * 119.90037 * 179.97438 * 17 16 15 36 36 H 1.07994 * 119.90344 * 180.25677 * 18 17 16 37 37 H 1.07994 * 119.99890 * 179.76706 * 19 18 17 38 38 H 0.96997 * 120.00262 * 0.02562 * 21 20 19 39 39 H 0.96998 * 120.00399 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6856 -2.1448 1.1718 6 6 2.5499 -2.9508 2.0442 7 6 3.9337 -3.0238 1.4517 8 1 4.1659 -2.4723 0.5527 9 6 4.9031 -3.7947 2.0574 10 7 4.6204 -4.4658 3.1525 11 14 6.6181 -3.8858 1.3227 12 1 6.6777 -3.0459 0.0994 13 1 7.6078 -3.3901 2.3127 14 1 6.9320 -5.2941 0.9714 15 6 0.3346 -2.3430 1.4819 16 6 -0.1840 -1.8566 2.6724 17 6 -1.5183 -2.0540 2.9769 18 6 -2.3400 -2.7311 2.0950 19 6 -1.8300 -3.2240 0.9082 20 6 -0.4931 -3.0307 0.5947 21 7 0.0242 -3.5240 -0.6092 22 1 -0.3634 0.3571 0.9637 23 1 -0.3635 0.6559 -0.7911 24 1 -0.3633 -1.0131 -0.1725 25 1 1.8932 -0.5137 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.5830 -0.2807 2.1352 30 1 3.1236 -0.6195 1.3105 31 1 2.6009 -2.4902 3.0308 32 1 2.1393 -3.9566 2.1335 33 1 5.3026 -5.0079 3.5789 34 1 0.4542 -1.3237 3.3617 35 1 -1.9205 -1.6749 3.9048 36 1 -3.3824 -2.8789 2.3357 37 1 -2.4738 -3.7557 0.2233 38 1 -0.5528 -4.0015 -1.2256 39 1 0.9596 -3.3883 -0.8270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043416367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:30 Heat of formation + Delta-G solvation = 5.175101 kcal Electronic energy + Delta-G solvation = -18823.870628 eV Core-core repulsion = 16151.103690 eV Total energy + Delta-G solvation = -2672.766938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05216 -37.97546 -35.63441 -35.11079 -34.35267 -30.87556 -29.46784 -28.52335 -27.80062 -26.31283 -24.24533 -22.89240 -21.73230 -20.71444 -18.70503 -17.92135 -17.43468 -17.01230 -16.71074 -15.78901 -15.57020 -15.32094 -14.78992 -14.59626 -14.46823 -14.19414 -13.78515 -13.72148 -13.34304 -13.06291 -12.82110 -12.78204 -12.59859 -12.42033 -12.10331 -11.95783 -11.68773 -11.52176 -11.42547 -11.31247 -11.19066 -10.62618 -9.52614 -9.07193 -8.21241 -8.09838 -6.30229 0.59740 0.86846 1.40298 1.40720 1.54353 2.39676 3.07045 3.11263 3.20881 3.34838 4.07584 4.09698 4.17419 4.32877 4.33673 4.58825 4.68429 4.76457 4.83295 4.85155 4.89733 5.00276 5.05630 5.11968 5.18986 5.20483 5.25577 5.30600 5.45272 5.55860 5.57386 5.68313 5.73509 5.83239 6.08365 6.14164 6.34208 6.65984 6.85860 7.02151 7.25787 7.39433 8.91264 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.007735 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.453596 B = 3619.193722 C = 4272.246001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.139 4.139 4 C 0.072 3.928 5 N -0.492 5.492 6 C 0.224 3.776 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.969 3.031 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.015 3.985 16 C -0.127 4.127 17 C -0.181 4.181 18 C -0.081 4.081 19 C -0.205 4.205 20 C 0.225 3.775 21 N -0.863 5.863 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.022 0.978 30 H 0.057 0.943 31 H -0.043 1.043 32 H -0.006 1.006 33 H 0.263 0.737 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.403 0.597 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.784 6.716 -6.742 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.197 4.197 4 C -0.056 4.056 5 N -0.212 5.212 6 C 0.099 3.901 7 C -0.554 4.554 8 H 0.084 0.916 9 C -0.197 4.197 10 N -0.576 5.576 11 Si 0.794 3.206 12 H -0.185 1.185 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.084 4.084 16 C -0.147 4.147 17 C -0.201 4.201 18 C -0.099 4.099 19 C -0.228 4.228 20 C 0.118 3.882 21 N -0.401 5.401 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.075 0.925 31 H -0.026 1.026 32 H 0.012 0.988 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.233 0.767 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.609 6.453 -7.097 15.059 hybrid contribution 1.257 -0.225 0.866 1.543 sum -10.352 6.227 -6.231 13.593 Atomic orbital electron populations 1.21979 0.94847 1.02353 1.00616 1.20997 0.96221 0.95764 0.97028 1.21766 1.00799 0.94955 1.02149 1.22170 0.99626 0.86891 0.96869 1.59599 1.00037 1.07660 1.53951 1.19302 0.91474 0.90663 0.88668 1.21464 0.95363 1.27918 1.10681 0.91604 1.25920 1.03399 0.95067 0.95332 1.70116 1.35522 1.31354 1.20586 0.85334 0.78716 0.77964 0.78577 1.18483 1.20634 1.20559 1.18610 0.90502 1.04553 0.94731 1.21424 0.96763 1.00484 0.96063 1.20929 0.93019 1.04725 1.01461 1.21118 1.00244 0.95692 0.92869 1.20788 0.93090 1.08325 1.00601 1.17781 0.91988 0.91816 0.86652 1.42455 1.14408 1.63920 1.19360 0.94167 0.92345 0.91921 0.91778 0.93042 0.91085 0.92829 0.95999 0.92468 1.02579 0.98793 0.92817 0.88764 0.85316 0.83363 0.83840 0.76738 0.76807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 7.99 71.98 0.57 -3.56 16 2 C -0.08 -2.57 3.11 -10.79 -0.03 -2.61 16 3 C -0.14 -3.64 9.18 71.98 0.66 -2.98 16 4 C 0.07 2.85 4.38 86.30 0.38 3.22 16 5 N -0.49 -21.40 3.53 -698.91 -2.46 -23.86 16 6 C 0.22 12.23 4.42 85.56 0.38 12.61 16 7 C -0.52 -29.25 8.39 25.60 0.21 -29.03 16 8 H 0.07 3.63 7.60 -2.91 -0.02 3.61 16 9 C 0.00 0.04 5.46 84.65 0.46 0.50 16 10 N -0.94 -57.18 13.29 21.44 0.28 -56.90 16 11 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 C 0.01 0.57 2.53 38.23 0.10 0.66 16 16 C -0.13 -4.75 8.22 22.38 0.18 -4.56 16 17 C -0.18 -5.51 10.04 22.28 0.22 -5.29 16 18 C -0.08 -2.13 10.04 22.28 0.22 -1.90 16 19 C -0.20 -5.66 9.89 22.38 0.22 -5.43 16 20 C 0.22 7.51 4.75 38.23 0.18 7.69 16 21 N -0.86 -25.54 9.03 -50.96 -0.46 -26.00 16 22 H 0.04 1.21 7.73 -2.38 -0.02 1.20 16 23 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 24 H 0.06 1.96 4.49 -2.39 -0.01 1.95 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.02 0.87 6.26 -2.39 -0.01 0.86 16 30 H 0.06 2.52 6.97 -2.39 -0.02 2.50 16 31 H -0.04 -2.61 8.05 -2.39 -0.02 -2.63 16 32 H -0.01 -0.37 7.98 -2.38 -0.02 -0.39 16 33 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.09 3.77 7.09 -2.91 -0.02 3.75 16 35 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 36 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.40 9.01 8.85 -92.71 -0.82 8.19 16 39 H 0.40 13.49 8.11 -92.71 -0.75 12.74 16 Total: -1.00 -65.03 311.38 2.62 -62.41 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.53 Total: 28.51 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 3.77 Total: -30.67 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -2.64 Total: -106.76 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.03 2.62 -62.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043416367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.584 kcal (2) G-P(sol) polarization free energy of solvation -65.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds