Wall clock time and date at job start Mon Mar 30 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46506 * 120.00148 * 4.99746 * 6 5 4 8 8 C 1.50698 * 109.46897 * 90.00320 * 7 6 5 9 9 H 1.07991 * 120.00395 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99550 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99948 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99713 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47339 * 60.00061 * 12 10 8 14 14 H 1.48507 * 109.46967 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47022 * 299.99939 * 12 10 8 16 16 C 1.46500 * 120.00282 * 185.00158 * 6 5 4 17 17 C 1.53002 * 109.47117 * 89.99271 * 16 6 5 18 18 C 1.52999 * 109.46812 * 65.00949 * 17 16 6 19 19 C 1.53007 * 109.46787 * 185.00305 * 17 16 6 20 20 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 21 21 C 1.31970 * 121.62524 * 359.97438 * 20 5 4 22 22 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 23 23 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 24 24 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 25 25 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 26 26 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 27 27 H 1.09003 * 109.46929 * 210.00279 * 7 6 5 28 28 H 1.08999 * 109.46910 * 329.99880 * 7 6 5 29 29 H 0.97006 * 119.99841 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.47662 * 209.99754 * 16 6 5 31 31 H 1.09005 * 109.46388 * 329.99703 * 16 6 5 32 32 H 1.08999 * 109.47423 * 305.00389 * 17 16 6 33 33 H 1.09005 * 109.46774 * 299.99398 * 18 17 16 34 34 H 1.08999 * 109.47585 * 59.99538 * 18 17 16 35 35 H 1.09000 * 109.46920 * 179.97438 * 18 17 16 36 36 H 1.08999 * 109.46943 * 60.00285 * 19 17 16 37 37 H 1.09000 * 109.46792 * 180.02562 * 19 17 16 38 38 H 1.08999 * 109.47207 * 300.00216 * 19 17 16 39 39 H 1.08004 * 119.56936 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4027 1.0899 0.1078 8 6 6.6680 1.3877 1.5610 9 1 6.2888 0.7262 2.3258 10 6 7.3939 2.5055 1.9142 11 7 7.8551 3.3114 0.9829 12 14 7.7221 2.8752 3.7156 13 1 8.4781 1.7501 4.3220 14 1 8.5177 4.1241 3.8276 15 1 6.4310 3.0456 4.4292 16 6 6.2949 -1.4355 -0.1144 17 6 6.5350 -1.7597 -1.5903 18 6 7.5087 -0.7400 -2.1845 19 6 7.1292 -3.1643 -1.7138 20 7 3.5237 -1.2034 -0.0026 21 6 2.2040 -1.1913 -0.0021 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.6863 2.1440 -0.0004 26 1 4.1676 2.0674 -0.0050 27 1 7.3502 0.9645 -0.4163 28 1 5.8479 1.9159 -0.3371 29 1 8.3655 4.0980 1.2314 30 1 7.2504 -1.3914 0.4080 31 1 5.6725 -2.2114 0.3314 32 1 5.5892 -1.7165 -2.1304 33 1 7.0854 0.2606 -2.0965 34 1 8.4545 -0.7832 -1.6444 35 1 7.6801 -0.9713 -3.2358 36 1 6.4355 -3.8907 -1.2904 37 1 7.3006 -3.3950 -2.7652 38 1 8.0750 -3.2074 -1.1737 39 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043419789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:14 Heat of formation + Delta-G solvation = 22.841925 kcal Electronic energy + Delta-G solvation = -18345.639934 eV Core-core repulsion = 15673.639087 eV Total energy + Delta-G solvation = -2672.000847 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.64543 -37.04503 -34.19774 -32.98547 -32.00588 -30.63370 -27.85609 -26.72508 -26.48833 -24.61130 -22.55007 -22.42328 -20.33914 -19.52330 -16.71765 -16.38065 -16.05896 -14.78242 -14.55953 -14.31289 -14.20496 -13.73645 -13.54960 -13.20874 -12.64059 -12.51503 -12.29285 -12.17715 -12.01712 -11.82167 -11.44651 -11.29866 -11.14665 -10.96687 -10.83990 -10.58141 -10.31022 -10.17982 -10.03124 -9.74656 -9.11888 -8.81467 -8.70068 -8.48426 -6.61988 -6.07336 -4.19383 1.98686 2.10290 3.26974 3.31225 3.34762 3.94895 4.37685 4.58163 5.13213 5.21008 5.33397 5.34941 5.39220 5.45765 5.56453 5.63901 5.82176 5.86322 5.95483 6.04139 6.10410 6.14916 6.20683 6.23728 6.35357 6.44841 6.47238 6.51909 6.66200 6.77795 6.82552 6.94254 7.08789 7.28395 7.35412 7.75620 7.97557 8.14925 8.44545 8.79302 8.99200 9.47549 10.93196 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.008540 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.152847 B = 3277.823484 C = 4711.491632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.233 4.233 3 C -0.040 4.040 4 C -0.224 4.224 5 C 0.415 3.585 6 N -0.585 5.585 7 C 0.247 3.753 8 C -0.534 4.534 9 H 0.058 0.942 10 C 0.064 3.936 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.136 3.864 17 C -0.109 4.109 18 C -0.147 4.147 19 C -0.140 4.140 20 N -0.556 5.556 21 C 0.142 3.858 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.121 0.879 26 H 0.139 0.861 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 -7.247 -4.411 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.239 4.239 3 C -0.066 4.066 4 C -0.250 4.250 5 C 0.178 3.822 6 N -0.292 5.292 7 C 0.128 3.872 8 C -0.573 4.573 9 H 0.077 0.923 10 C -0.139 4.139 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.011 3.989 17 C -0.129 4.129 18 C -0.204 4.204 19 C -0.198 4.198 20 N -0.274 5.274 21 C -0.016 4.016 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.139 0.861 26 H 0.157 0.843 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.605 -7.842 -4.433 11.170 hybrid contribution -0.167 1.174 1.056 1.588 sum -6.772 -6.667 -3.377 10.086 Atomic orbital electron populations 1.20437 0.91572 1.01675 1.01021 1.20335 0.96436 0.94317 1.12778 1.21087 0.93427 0.97314 0.94785 1.21623 0.94749 0.98611 1.09974 1.18456 0.85840 0.88774 0.89121 1.47057 1.00531 1.08256 1.73384 1.19488 0.90783 0.80034 0.96912 1.21544 1.34169 1.09033 0.92511 0.92336 1.24929 0.95431 0.95814 0.97710 1.69912 1.36429 1.14352 1.32618 0.86585 0.78412 0.77631 0.85012 1.20184 1.21150 1.20180 1.21285 0.97323 0.85804 0.94439 1.21512 0.98912 0.94646 0.97844 1.21935 0.99245 1.00068 0.99187 1.21746 1.00668 0.96456 1.00968 1.67178 1.08074 1.29876 1.22267 1.22050 0.88939 0.96612 0.94001 0.92571 0.92463 0.92524 0.86149 0.84322 0.93748 0.94770 0.92556 0.91179 0.90854 0.91648 0.91591 0.92784 0.93929 0.92865 0.93207 0.92835 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 10.03 36.01 0.36 -0.69 16 2 C -0.23 -3.66 5.90 -104.46 -0.62 -4.27 16 3 C -0.04 -0.70 9.85 -39.32 -0.39 -1.08 16 4 C -0.22 -4.58 9.27 -39.22 -0.36 -4.94 16 5 C 0.41 8.78 7.37 -155.03 -1.14 7.64 16 6 N -0.58 -12.65 2.40 -175.20 -0.42 -13.07 16 7 C 0.25 6.05 4.08 -5.19 -0.02 6.03 16 8 C -0.53 -14.45 9.39 -34.44 -0.32 -14.78 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 12 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.14 2.57 4.96 -4.04 -0.02 2.55 16 17 C -0.11 -1.79 3.13 -90.62 -0.28 -2.07 16 18 C -0.15 -2.45 8.18 37.16 0.30 -2.15 16 19 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 20 N -0.56 -10.89 9.08 -12.44 -0.11 -11.01 16 21 C 0.14 2.37 10.85 -17.57 -0.19 2.18 16 22 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 23 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 24 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 26 H 0.14 3.02 6.02 -52.49 -0.32 2.70 16 27 H 0.04 1.12 5.98 -51.93 -0.31 0.81 16 28 H 0.03 0.88 5.97 -51.93 -0.31 0.57 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 30 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.07 1.39 7.30 -51.93 -0.38 1.01 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.25 5.89 -51.93 -0.31 0.94 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -28.41 317.93 -8.70 -37.11 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.23 Total: 1.90 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -2.44 Total: -11.48 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.20 Total: -48.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.41 -8.70 -37.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.950 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds