Wall clock time and date at job start Mon Mar 30 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46506 * 120.00148 * 4.99746 * 6 5 4 8 8 C 1.50698 * 109.46897 * 90.00320 * 7 6 5 9 9 H 1.07991 * 120.00395 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99550 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99948 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99713 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47339 * 60.00061 * 12 10 8 14 14 H 1.48507 * 109.46967 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47022 * 299.99939 * 12 10 8 16 16 C 1.46500 * 120.00282 * 185.00158 * 6 5 4 17 17 C 1.53002 * 109.47117 * 89.99271 * 16 6 5 18 18 C 1.52999 * 109.46812 * 65.00949 * 17 16 6 19 19 C 1.53007 * 109.46787 * 185.00305 * 17 16 6 20 20 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 21 21 C 1.31970 * 121.62524 * 359.97438 * 20 5 4 22 22 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 23 23 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 24 24 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 25 25 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 26 26 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 27 27 H 1.09003 * 109.46929 * 210.00279 * 7 6 5 28 28 H 1.08999 * 109.46910 * 329.99880 * 7 6 5 29 29 H 0.97006 * 119.99841 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.47662 * 209.99754 * 16 6 5 31 31 H 1.09005 * 109.46388 * 329.99703 * 16 6 5 32 32 H 1.08999 * 109.47423 * 305.00389 * 17 16 6 33 33 H 1.09005 * 109.46774 * 299.99398 * 18 17 16 34 34 H 1.08999 * 109.47585 * 59.99538 * 18 17 16 35 35 H 1.09000 * 109.46920 * 179.97438 * 18 17 16 36 36 H 1.08999 * 109.46943 * 60.00285 * 19 17 16 37 37 H 1.09000 * 109.46792 * 180.02562 * 19 17 16 38 38 H 1.08999 * 109.47207 * 300.00216 * 19 17 16 39 39 H 1.08004 * 119.56936 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4027 1.0899 0.1078 8 6 6.6680 1.3877 1.5610 9 1 6.2888 0.7262 2.3258 10 6 7.3939 2.5055 1.9142 11 7 7.8551 3.3114 0.9829 12 14 7.7221 2.8752 3.7156 13 1 8.4781 1.7501 4.3220 14 1 8.5177 4.1241 3.8276 15 1 6.4310 3.0456 4.4292 16 6 6.2949 -1.4355 -0.1144 17 6 6.5350 -1.7597 -1.5903 18 6 7.5087 -0.7400 -2.1845 19 6 7.1292 -3.1643 -1.7138 20 7 3.5237 -1.2034 -0.0026 21 6 2.2040 -1.1913 -0.0021 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.6863 2.1440 -0.0004 26 1 4.1676 2.0674 -0.0050 27 1 7.3502 0.9645 -0.4163 28 1 5.8479 1.9159 -0.3371 29 1 8.3655 4.0980 1.2314 30 1 7.2504 -1.3914 0.4080 31 1 5.6725 -2.2114 0.3314 32 1 5.5892 -1.7165 -2.1304 33 1 7.0854 0.2606 -2.0965 34 1 8.4545 -0.7832 -1.6444 35 1 7.6801 -0.9713 -3.2358 36 1 6.4355 -3.8907 -1.2904 37 1 7.3006 -3.3950 -2.7652 38 1 8.0750 -3.2074 -1.1737 39 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:13 Heat of formation + Delta-G solvation = 9.145393 kcal Electronic energy + Delta-G solvation = -18346.233860 eV Core-core repulsion = 15673.639087 eV Total energy + Delta-G solvation = -2672.594773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11028 -38.53461 -35.72674 -34.74264 -33.59731 -32.02011 -29.68967 -28.00135 -27.79298 -26.27850 -24.14973 -23.93031 -21.81385 -20.93394 -18.67752 -18.08687 -17.54721 -16.57364 -16.03463 -15.81969 -15.71078 -15.08473 -14.81711 -14.76081 -14.23842 -13.90097 -13.62264 -13.53390 -13.29147 -13.10525 -13.02830 -12.95913 -12.68271 -12.58693 -12.33458 -12.13136 -11.99401 -11.83584 -11.55713 -11.52122 -10.63656 -10.54118 -10.38015 -10.13185 -8.40897 -7.94926 -6.37058 0.55025 0.68634 1.36711 1.37704 1.46201 2.28813 2.45583 3.06038 3.13395 3.77890 3.96556 4.08750 4.11970 4.23587 4.34101 4.38034 4.40359 4.66717 4.74577 4.78588 4.88380 4.94128 4.95498 5.00094 5.04151 5.08477 5.13902 5.18538 5.27281 5.28774 5.36058 5.46823 5.48312 5.60930 5.67163 5.96767 6.06936 6.28153 6.73754 6.84877 7.29349 7.46345 8.82536 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.008540 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.152847 B = 3277.823484 C = 4711.491632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.219 4.219 3 C -0.040 4.040 4 C -0.255 4.255 5 C 0.389 3.611 6 N -0.597 5.597 7 C 0.269 3.731 8 C -0.547 4.547 9 H 0.044 0.956 10 C 0.019 3.981 11 N -0.922 5.922 12 Si 0.957 3.043 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.275 1.275 16 C 0.138 3.862 17 C -0.100 4.100 18 C -0.142 4.142 19 C -0.133 4.133 20 N -0.566 5.566 21 C 0.134 3.866 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.146 0.854 26 H 0.111 0.889 27 H 0.031 0.969 28 H 0.012 0.988 29 H 0.268 0.732 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.210 -8.558 -4.168 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.224 4.224 3 C -0.066 4.066 4 C -0.281 4.281 5 C 0.155 3.845 6 N -0.307 5.307 7 C 0.148 3.852 8 C -0.586 4.586 9 H 0.062 0.938 10 C -0.181 4.181 11 N -0.561 5.561 12 Si 0.782 3.218 13 H -0.196 1.196 14 H -0.201 1.201 15 H -0.200 1.200 16 C 0.015 3.985 17 C -0.120 4.120 18 C -0.199 4.199 19 C -0.191 4.191 20 N -0.284 5.284 21 C -0.024 4.024 22 H 0.092 0.908 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.163 0.837 26 H 0.129 0.871 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.401 -9.173 -4.196 13.128 hybrid contribution 0.214 1.557 0.949 1.836 sum -8.187 -7.616 -3.247 11.644 Atomic orbital electron populations 1.20523 0.87984 1.03300 1.02612 1.20834 0.98874 0.93121 1.09586 1.21436 0.92165 0.99391 0.93572 1.21570 0.96331 0.97472 1.12697 1.18592 0.85686 0.89613 0.90641 1.46875 1.01019 1.07898 1.74871 1.18981 0.90137 0.80911 0.95198 1.21748 1.34285 1.09106 0.93449 0.93771 1.25681 0.95117 0.95542 1.01769 1.70010 1.36915 1.14737 1.34468 0.85623 0.78284 0.77797 0.80070 1.19574 1.20144 1.20043 1.21347 0.96325 0.84694 0.96178 1.21413 0.98456 0.96482 0.95647 1.21860 0.98812 0.98537 1.00679 1.21687 1.00784 0.94191 1.02390 1.67199 1.09599 1.29172 1.22410 1.22784 0.88100 0.98710 0.92791 0.90831 0.90415 0.91434 0.83673 0.87106 0.95113 0.96985 0.92296 0.92526 0.90840 0.92787 0.94668 0.93176 0.91576 0.92077 0.91361 0.92335 0.80527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 10.03 71.24 0.71 -0.93 16 2 C -0.22 -6.29 5.90 -19.76 -0.12 -6.40 16 3 C -0.04 -1.34 9.85 22.44 0.22 -1.12 16 4 C -0.26 -10.82 9.27 22.50 0.21 -10.61 16 5 C 0.39 17.01 7.37 133.07 0.98 17.99 16 6 N -0.60 -27.16 2.40 -708.22 -1.70 -28.86 16 7 C 0.27 14.01 4.08 85.63 0.35 14.36 16 8 C -0.55 -30.91 9.39 25.60 0.24 -30.67 16 9 H 0.04 2.56 7.81 -2.92 -0.02 2.54 16 10 C 0.02 1.05 5.46 84.66 0.46 1.51 16 11 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16 12 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 C 0.14 5.40 4.96 86.38 0.43 5.83 16 17 C -0.10 -3.30 3.13 -10.79 -0.03 -3.33 16 18 C -0.14 -4.82 8.18 71.98 0.59 -4.23 16 19 C -0.13 -3.36 9.19 71.98 0.66 -2.70 16 20 N -0.57 -21.92 9.08 -193.26 -1.75 -23.68 16 21 C 0.13 4.15 10.85 84.62 0.92 5.07 16 22 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 24 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 25 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 26 H 0.11 5.23 6.02 -2.91 -0.02 5.21 16 27 H 0.03 1.67 5.98 -2.39 -0.01 1.65 16 28 H 0.01 0.68 5.97 -2.39 -0.01 0.67 16 29 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 30 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.07 2.82 7.30 -2.38 -0.02 2.81 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.03 1.40 5.89 -2.38 -0.01 1.38 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -63.35 317.93 5.49 -57.86 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.01 Total: 16.91 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 5.62 Total: -15.24 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.17 Total: -105.71 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.35 5.49 -57.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.005 kcal (2) G-P(sol) polarization free energy of solvation -63.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds