Wall clock time and date at job start Mon Mar 30 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46994 * 2 1 4 4 N 1.46498 * 109.46949 * 179.97438 * 3 2 1 5 5 C 1.46502 * 119.99794 * 269.99467 * 4 3 2 6 6 C 1.52999 * 109.47399 * 270.00035 * 5 4 3 7 7 C 1.50702 * 109.46896 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99835 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99656 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99932 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99766 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47224 * 60.00513 * 11 9 7 13 13 H 1.48502 * 109.47250 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47311 * 300.00064 * 11 9 7 15 15 C 1.39667 * 120.00080 * 90.00154 * 4 3 2 16 16 C 1.38990 * 120.03544 * 359.97438 * 15 4 3 17 17 C 1.38140 * 120.07325 * 179.97438 * 16 15 4 18 18 C 1.38172 * 120.14497 * 0.28167 * 17 16 15 19 19 C 1.38955 * 120.07498 * 359.43949 * 18 17 16 20 20 N 1.39667 * 120.03590 * 180.25620 * 19 18 17 21 21 C 1.38753 * 120.03667 * 179.97438 * 15 4 3 22 22 H 1.08995 * 109.47536 * 300.00178 * 1 2 3 23 23 H 1.09001 * 109.46621 * 60.00142 * 1 2 3 24 24 H 1.09004 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47536 * 239.99822 * 2 1 3 26 26 H 1.08995 * 109.47220 * 119.99516 * 2 1 3 27 27 H 1.08995 * 109.47125 * 59.99570 * 3 2 1 28 28 H 1.08995 * 109.46742 * 299.99808 * 3 2 1 29 29 H 1.08997 * 109.47397 * 30.00637 * 5 4 3 30 30 H 1.09004 * 109.46397 * 150.00659 * 5 4 3 31 31 H 1.08997 * 109.47338 * 300.00639 * 6 5 4 32 32 H 1.09007 * 109.46593 * 60.00434 * 6 5 4 33 33 H 0.96998 * 119.99374 * 179.97438 * 10 9 7 34 34 H 1.08005 * 119.96714 * 359.97438 * 16 15 4 35 35 H 1.08002 * 119.92405 * 179.97438 * 17 16 15 36 36 H 1.08005 * 119.96583 * 179.70444 * 18 17 16 37 37 H 0.97003 * 119.99615 * 180.30145 * 20 19 18 38 38 H 0.96996 * 120.00693 * 0.30287 * 20 19 18 39 39 H 1.07992 * 120.07199 * 359.97438 * 21 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2369 1.4429 1.2697 6 6 4.4917 2.8854 1.7112 7 6 5.2452 2.8856 3.0163 8 1 5.5156 1.9504 3.4838 9 6 5.5893 4.0798 3.6135 10 7 5.2595 5.2187 3.0443 11 14 6.5238 4.0801 5.2309 12 1 7.8219 3.3810 5.0527 13 1 6.7700 5.4802 5.6601 14 1 5.7221 3.3792 6.2659 15 6 4.2038 1.4424 -1.2086 16 6 3.5101 1.4417 -2.4131 17 6 4.2006 1.4421 -3.6095 18 6 5.5823 1.4373 -3.6134 19 6 6.2820 1.4438 -2.4128 20 7 7.6786 1.4444 -2.4177 21 6 5.5914 1.4429 -1.2089 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.6476 0.9292 2.0292 30 1 5.1894 0.9291 1.1398 31 1 5.0811 3.3992 0.9517 32 1 3.5392 3.3992 1.8411 33 1 5.5013 6.0587 3.4647 34 1 2.4301 1.4409 -2.4136 35 1 3.6591 1.4412 -4.5440 36 1 6.1192 1.4328 -4.5505 37 1 8.1665 1.4445 -1.5793 38 1 8.1608 1.4446 -3.2593 39 1 6.1327 1.4439 -0.2745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063112831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:49 Heat of formation + Delta-G solvation = -5.586060 kcal Electronic energy + Delta-G solvation = -17984.050380 eV Core-core repulsion = 15310.816803 eV Total energy + Delta-G solvation = -2673.233577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56229 -38.13619 -35.57871 -34.93891 -34.15100 -31.81714 -30.43080 -28.98884 -27.32726 -25.75126 -23.64131 -22.78215 -22.34818 -20.92955 -18.72993 -18.37553 -17.57893 -16.69188 -16.56890 -16.13254 -16.07517 -15.24492 -15.02644 -14.76299 -14.38015 -14.13412 -13.94188 -13.91014 -13.53698 -12.90150 -12.85627 -12.77888 -12.64702 -12.35329 -12.15109 -11.96003 -11.82180 -11.66738 -11.54193 -11.40956 -11.25925 -10.58208 -10.28932 -8.52012 -8.22981 -7.91790 -6.34551 0.84104 1.01599 1.38667 1.41915 1.49849 2.30483 2.45654 3.11429 3.17187 3.22901 3.99617 4.10948 4.17743 4.34859 4.42291 4.51917 4.60838 4.61247 4.71555 4.75987 4.88578 4.96233 4.97825 5.05897 5.06631 5.20296 5.28408 5.42395 5.43903 5.54178 5.59269 5.65213 5.79936 5.86248 6.02443 6.14645 6.55651 6.69890 6.83164 6.87579 7.12775 7.35197 8.90013 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.006808 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.782535 B = 4111.634144 C = 5498.577845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.121 3.879 4 N -0.628 5.628 5 C 0.144 3.856 6 C 0.026 3.974 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.002 3.998 10 N -0.933 5.933 11 Si 0.967 3.033 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.264 1.264 15 C 0.249 3.751 16 C -0.267 4.267 17 C -0.031 4.031 18 C -0.268 4.268 19 C 0.248 3.752 20 N -0.871 5.871 21 C -0.301 4.301 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.061 0.939 31 H -0.016 1.016 32 H -0.015 1.015 33 H 0.263 0.737 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.399 0.601 38 H 0.407 0.593 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 -10.199 -11.374 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.002 4.002 4 N -0.335 5.335 5 C 0.021 3.979 6 C -0.013 4.013 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.196 4.196 10 N -0.573 5.573 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.144 3.856 16 C -0.291 4.291 17 C -0.050 4.050 18 C -0.292 4.292 19 C 0.141 3.859 20 N -0.410 5.410 21 C -0.329 4.329 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.002 0.998 32 H 0.004 0.996 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.227 0.773 38 H 0.237 0.763 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.385 -10.021 -11.176 15.388 hybrid contribution 0.979 0.599 1.145 1.621 sum -2.406 -9.422 -10.032 13.971 Atomic orbital electron populations 1.21670 0.93638 1.02508 1.02291 1.21863 0.97108 0.96178 1.01870 1.21548 0.78891 0.97465 1.02279 1.46885 1.05211 1.78448 1.03000 1.21327 0.95595 0.97130 0.83848 1.19228 0.94520 0.92855 0.94653 1.21548 1.36519 0.92913 1.07216 0.91742 1.25986 0.96887 0.95095 1.01631 1.70127 1.47953 0.98038 1.41133 0.85484 0.79215 0.77194 0.79053 1.19065 1.20973 1.18920 1.17846 0.90770 0.90586 0.86370 1.20608 0.99797 1.17869 0.90830 1.20890 0.93489 0.93131 0.97478 1.20539 0.94738 1.18055 0.95865 1.17635 0.84696 0.90477 0.93094 1.42428 1.02565 1.84614 1.11404 1.20149 0.93280 1.22405 0.97017 0.92734 0.91741 0.91470 0.91862 0.92945 0.92209 0.90192 0.91545 0.92096 0.99797 0.99627 0.92817 0.85514 0.83609 0.84786 0.77307 0.76277 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.91 71.98 0.71 -2.11 16 2 C -0.13 -3.35 6.26 30.60 0.19 -3.16 16 3 C 0.12 3.81 5.16 86.38 0.45 4.26 16 4 N -0.63 -23.98 2.61 -697.38 -1.82 -25.80 16 5 C 0.14 6.26 5.10 86.38 0.44 6.70 16 6 C 0.03 1.40 5.30 29.85 0.16 1.56 16 7 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.00 0.12 5.46 84.65 0.46 0.58 16 10 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 11 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 15 C 0.25 9.32 6.55 38.20 0.25 9.57 16 16 C -0.27 -8.41 9.20 22.43 0.21 -8.21 16 17 C -0.03 -0.83 10.03 22.23 0.22 -0.61 16 18 C -0.27 -7.46 9.89 22.43 0.22 -7.24 16 19 C 0.25 7.91 6.75 38.20 0.26 8.17 16 20 N -0.87 -21.82 9.09 -51.42 -0.47 -22.29 16 21 C -0.30 -11.54 9.05 22.53 0.20 -11.34 16 22 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 28 H 0.08 2.32 6.20 -2.39 -0.01 2.30 16 29 H 0.07 2.74 8.07 -2.39 -0.02 2.72 16 30 H 0.06 2.64 6.20 -2.38 -0.01 2.63 16 31 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 32 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 33 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 34 H 0.13 3.53 6.14 -2.91 -0.02 3.51 16 35 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 37 H 0.40 9.77 8.84 -92.71 -0.82 8.96 16 38 H 0.41 7.62 8.84 -92.71 -0.82 6.80 16 39 H 0.10 4.24 6.14 -2.91 -0.02 4.22 16 Total: -1.00 -68.06 321.25 3.43 -64.63 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.60 Total: 27.43 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 4.01 Total: -32.75 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -2.00 Total: -105.74 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.06 3.43 -64.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063112831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.040 kcal (2) G-P(sol) polarization free energy of solvation -68.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds