Wall clock time and date at job start Mon Mar 30 2020 06:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47489 * 2 1 4 4 N 1.46894 * 109.47262 * 185.12360 * 3 2 1 5 5 C 1.46904 * 111.00331 * 160.43724 * 4 3 2 6 6 C 1.53001 * 109.46941 * 287.94354 * 5 4 3 7 7 C 1.50700 * 109.46885 * 179.70722 * 6 5 4 8 8 H 1.07996 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99854 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00026 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99703 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47121 * 89.99905 * 11 9 7 13 13 H 1.48500 * 109.46689 * 209.99938 * 11 9 7 14 14 H 1.48497 * 109.47136 * 329.99603 * 11 9 7 15 15 C 1.40018 * 111.00475 * 284.39246 * 4 3 2 16 16 C 1.38659 * 120.09854 * 299.98058 * 15 4 3 17 17 C 1.38268 * 120.00216 * 180.02562 * 16 15 4 18 18 C 1.38252 * 120.19189 * 359.74420 * 17 16 15 19 19 C 1.38275 * 120.19417 * 0.51000 * 18 17 16 20 20 C 1.38661 * 119.99231 * 359.48912 * 19 18 17 21 21 N 1.40020 * 120.09018 * 180.27784 * 20 19 18 22 22 H 1.08999 * 109.47748 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46665 * 300.00153 * 1 2 3 24 24 H 1.09000 * 109.46875 * 59.99139 * 1 2 3 25 25 H 1.09006 * 109.46665 * 239.99847 * 2 1 3 26 26 H 1.09006 * 109.46720 * 120.00466 * 2 1 3 27 27 H 1.09000 * 109.47161 * 65.12870 * 3 2 1 28 28 H 1.08993 * 109.47590 * 305.12702 * 3 2 1 29 29 H 1.09001 * 109.46558 * 47.94297 * 5 4 3 30 30 H 1.09001 * 109.47450 * 167.94467 * 5 4 3 31 31 H 1.09004 * 109.47148 * 299.70912 * 6 5 4 32 32 H 1.08999 * 109.47370 * 59.71107 * 6 5 4 33 33 H 0.96996 * 120.00253 * 180.02562 * 10 9 7 34 34 H 1.08008 * 119.99769 * 359.97438 * 16 15 4 35 35 H 1.07998 * 119.90308 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.90460 * 180.25516 * 18 17 16 37 37 H 1.07997 * 120.00077 * 179.76713 * 19 18 17 38 38 H 0.97000 * 120.00192 * 359.97438 * 21 20 19 39 39 H 0.97001 * 119.99990 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5038 1.4442 -0.1237 5 6 3.9915 2.7502 -0.5869 6 6 3.6336 2.9339 -2.0631 7 6 4.1275 4.2766 -2.5364 8 1 4.6453 4.9331 -1.8528 9 6 3.9184 4.6670 -3.8422 10 7 3.2884 3.8674 -4.6747 11 14 4.5314 6.3312 -4.4290 12 1 5.9139 6.1928 -4.9531 13 1 3.6417 6.8346 -5.5061 14 1 4.5257 7.2890 -3.2942 15 6 4.1101 1.0823 1.0854 16 6 3.8940 1.8407 2.2260 17 6 4.4942 1.4819 3.4188 18 6 5.3062 0.3647 3.4801 19 6 5.5314 -0.3944 2.3465 20 6 4.9335 -0.0418 1.1461 21 7 5.1554 -0.8123 -0.0017 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7537 1.9291 0.9324 28 1 1.6038 1.9821 -0.8404 29 1 3.5259 3.5412 0.0010 30 1 5.0738 2.7974 -0.4669 31 1 4.1034 2.1458 -2.6517 32 1 2.5516 2.8816 -2.1839 33 1 3.1416 4.1418 -5.5933 34 1 3.2576 2.7123 2.1824 35 1 4.3251 2.0740 4.3061 36 1 5.7693 0.0863 4.4152 37 1 6.1692 -1.2644 2.3971 38 1 5.7284 -1.5938 0.0420 39 1 4.7368 -0.5642 -0.8409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063113794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:51 Heat of formation + Delta-G solvation = 14.824379 kcal Electronic energy + Delta-G solvation = -18192.029292 eV Core-core repulsion = 15519.680778 eV Total energy + Delta-G solvation = -2672.348514 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.70540 -36.69790 -34.07280 -33.48282 -32.66675 -30.29114 -28.84550 -27.68462 -25.61124 -23.99551 -22.34845 -21.29198 -20.82056 -19.63446 -17.15417 -16.54007 -16.27027 -15.67400 -14.87872 -14.56872 -14.35787 -14.01587 -13.77208 -13.46007 -13.23318 -12.77028 -12.63823 -12.17145 -11.76952 -11.59962 -11.48647 -11.11885 -11.01607 -10.87165 -10.71898 -10.53301 -10.36241 -10.27589 -9.82281 -9.47108 -9.14043 -8.42387 -8.33055 -7.84368 -7.12952 -5.99568 -4.01735 1.64094 1.92298 3.32342 3.38520 3.41907 4.12708 4.23144 4.36249 4.52825 5.17565 5.25532 5.31548 5.36697 5.38172 5.54390 5.65449 5.72708 5.86418 5.97341 6.07638 6.12280 6.13640 6.27359 6.29381 6.38997 6.54071 6.56581 6.62127 6.77286 6.86883 6.99903 7.11285 7.47496 7.62391 7.75791 7.88516 8.04532 8.16282 8.20457 8.43831 9.05390 9.61942 11.11642 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021219 B = 0.005873 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.228308 B = 4766.715837 C = 5349.644097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.058 3.942 4 N -0.501 5.501 5 C 0.070 3.930 6 C 0.031 3.969 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.891 3.109 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.027 3.973 16 C -0.104 4.104 17 C -0.177 4.177 18 C -0.083 4.083 19 C -0.205 4.205 20 C 0.239 3.761 21 N -0.867 5.867 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.085 0.915 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.023 0.977 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.390 0.610 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.066 -9.378 12.915 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.069 4.069 4 N -0.222 5.222 5 C -0.055 4.055 6 C -0.006 4.006 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.071 4.071 16 C -0.124 4.124 17 C -0.198 4.198 18 C -0.102 4.102 19 C -0.229 4.229 20 C 0.131 3.869 21 N -0.405 5.405 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.217 0.783 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.021 -9.701 12.354 15.708 hybrid contribution 0.213 1.374 -0.085 1.393 sum 0.192 -8.326 12.269 14.829 Atomic orbital electron populations 1.21728 0.96186 1.01108 1.01708 1.21430 0.94767 0.97025 1.01938 1.22260 0.87075 0.96782 1.00796 1.59650 1.05393 1.32358 1.24845 1.22391 0.98715 0.85118 0.99288 1.19081 0.96887 0.96511 0.88161 1.21191 1.36931 1.02165 0.95753 0.92841 1.24973 0.95248 0.97142 0.96836 1.69965 1.41758 1.36365 1.05141 0.86612 0.78694 0.84344 0.78464 1.20663 1.21230 1.19925 1.18457 1.01811 0.96431 0.90438 1.21442 0.99028 0.98840 0.93121 1.20695 1.02211 0.99312 0.97563 1.20760 0.97459 0.94749 0.97257 1.20451 1.06697 1.03537 0.92182 1.17661 0.92318 0.89730 0.87142 1.42521 1.56265 1.31218 1.10493 0.93096 0.93225 0.92464 0.91447 0.92833 0.95127 0.89698 0.95840 0.92253 0.95884 0.96442 0.93031 0.86702 0.87067 0.86801 0.86633 0.78338 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.11 -1.66 5.98 -26.73 -0.16 -1.82 16 3 C 0.06 0.97 4.74 -3.83 -0.02 0.96 16 4 N -0.50 -9.08 3.55 -170.91 -0.61 -9.69 16 5 C 0.07 1.50 4.48 -3.82 -0.02 1.49 16 6 C 0.03 0.80 5.04 -27.88 -0.14 0.66 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 11 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 15 C 0.03 0.45 4.07 -83.50 -0.34 0.11 16 16 C -0.10 -1.62 8.53 -39.41 -0.34 -1.96 16 17 C -0.18 -2.42 10.04 -39.57 -0.40 -2.82 16 18 C -0.08 -1.06 10.04 -39.56 -0.40 -1.46 16 19 C -0.21 -2.72 9.89 -39.41 -0.39 -3.11 16 20 C 0.24 3.60 6.78 -83.50 -0.57 3.03 16 21 N -0.87 -11.56 9.09 32.54 0.30 -11.26 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.79 7.84 -51.93 -0.41 0.38 16 27 H 0.03 0.50 6.71 -51.93 -0.35 0.15 16 28 H 0.08 1.60 6.25 -51.93 -0.32 1.28 16 29 H 0.02 0.50 7.84 -51.93 -0.41 0.09 16 30 H 0.06 1.32 7.97 -51.93 -0.41 0.90 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.47 6.53 -51.93 -0.34 0.13 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.11 1.79 7.29 -52.48 -0.38 1.40 16 35 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.39 4.06 8.85 -40.82 -0.36 3.70 16 39 H 0.41 6.04 8.11 -40.82 -0.33 5.71 16 LS Contribution 319.17 15.07 4.81 4.81 Total: -1.00 -29.83 319.17 -8.83 -38.66 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.24 Total: 6.70 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -2.80 Total: -19.93 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.43 Total: -46.94 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.83 -8.83 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063113794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.481 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds