Wall clock time and date at job start Mon Mar 30 2020 06:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47489 * 2 1 4 4 N 1.46894 * 109.47262 * 185.12360 * 3 2 1 5 5 C 1.46904 * 111.00331 * 160.43724 * 4 3 2 6 6 C 1.53001 * 109.46941 * 287.94354 * 5 4 3 7 7 C 1.50700 * 109.46885 * 179.70722 * 6 5 4 8 8 H 1.07996 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99854 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00026 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99703 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47121 * 89.99905 * 11 9 7 13 13 H 1.48500 * 109.46689 * 209.99938 * 11 9 7 14 14 H 1.48497 * 109.47136 * 329.99603 * 11 9 7 15 15 C 1.40018 * 111.00475 * 284.39246 * 4 3 2 16 16 C 1.38659 * 120.09854 * 299.98058 * 15 4 3 17 17 C 1.38268 * 120.00216 * 180.02562 * 16 15 4 18 18 C 1.38252 * 120.19189 * 359.74420 * 17 16 15 19 19 C 1.38275 * 120.19417 * 0.51000 * 18 17 16 20 20 C 1.38661 * 119.99231 * 359.48912 * 19 18 17 21 21 N 1.40020 * 120.09018 * 180.27784 * 20 19 18 22 22 H 1.08999 * 109.47748 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46665 * 300.00153 * 1 2 3 24 24 H 1.09000 * 109.46875 * 59.99139 * 1 2 3 25 25 H 1.09006 * 109.46665 * 239.99847 * 2 1 3 26 26 H 1.09006 * 109.46720 * 120.00466 * 2 1 3 27 27 H 1.09000 * 109.47161 * 65.12870 * 3 2 1 28 28 H 1.08993 * 109.47590 * 305.12702 * 3 2 1 29 29 H 1.09001 * 109.46558 * 47.94297 * 5 4 3 30 30 H 1.09001 * 109.47450 * 167.94467 * 5 4 3 31 31 H 1.09004 * 109.47148 * 299.70912 * 6 5 4 32 32 H 1.08999 * 109.47370 * 59.71107 * 6 5 4 33 33 H 0.96996 * 120.00253 * 180.02562 * 10 9 7 34 34 H 1.08008 * 119.99769 * 359.97438 * 16 15 4 35 35 H 1.07998 * 119.90308 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.90460 * 180.25516 * 18 17 16 37 37 H 1.07997 * 120.00077 * 179.76713 * 19 18 17 38 38 H 0.97000 * 120.00192 * 359.97438 * 21 20 19 39 39 H 0.97001 * 119.99990 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5038 1.4442 -0.1237 5 6 3.9915 2.7502 -0.5869 6 6 3.6336 2.9339 -2.0631 7 6 4.1275 4.2766 -2.5364 8 1 4.6453 4.9331 -1.8528 9 6 3.9184 4.6670 -3.8422 10 7 3.2884 3.8674 -4.6747 11 14 4.5314 6.3312 -4.4290 12 1 5.9139 6.1928 -4.9531 13 1 3.6417 6.8346 -5.5061 14 1 4.5257 7.2890 -3.2942 15 6 4.1101 1.0823 1.0854 16 6 3.8940 1.8407 2.2260 17 6 4.4942 1.4819 3.4188 18 6 5.3062 0.3647 3.4801 19 6 5.5314 -0.3944 2.3465 20 6 4.9335 -0.0418 1.1461 21 7 5.1554 -0.8123 -0.0017 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7537 1.9291 0.9324 28 1 1.6038 1.9821 -0.8404 29 1 3.5259 3.5412 0.0010 30 1 5.0738 2.7974 -0.4669 31 1 4.1034 2.1458 -2.6517 32 1 2.5516 2.8816 -2.1839 33 1 3.1416 4.1418 -5.5933 34 1 3.2576 2.7123 2.1824 35 1 4.3251 2.0740 4.3061 36 1 5.7693 0.0863 4.4152 37 1 6.1692 -1.2644 2.3971 38 1 5.7284 -1.5938 0.0420 39 1 4.7368 -0.5642 -0.8409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063113794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:51 Heat of formation + Delta-G solvation = -2.718398 kcal Electronic energy + Delta-G solvation = -18192.790004 eV Core-core repulsion = 15519.680778 eV Total energy + Delta-G solvation = -2673.109226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93011 -38.03247 -35.37783 -35.14617 -34.16660 -31.99511 -30.14240 -28.91430 -27.21004 -25.66435 -23.63971 -22.45502 -22.40273 -21.09147 -18.75544 -18.00957 -17.55314 -16.99567 -16.51438 -16.25559 -15.69046 -15.42103 -14.94556 -14.71662 -14.59812 -14.20586 -14.04357 -13.73648 -13.33516 -13.07377 -12.88516 -12.60355 -12.56460 -12.48501 -12.10567 -12.03458 -11.70748 -11.58926 -11.39429 -11.33336 -11.27886 -10.53914 -9.58251 -9.30055 -8.25588 -8.18221 -6.31337 0.51776 0.82655 1.39325 1.40539 1.51564 2.39530 2.97694 3.02197 3.12932 3.24155 4.01521 4.09113 4.17755 4.30904 4.35358 4.48214 4.53670 4.65106 4.66426 4.75013 4.80630 4.87777 4.99113 5.04690 5.09543 5.16148 5.29968 5.39182 5.41916 5.47693 5.64243 5.68901 5.77169 5.79695 6.05708 6.09170 6.31028 6.48697 6.84602 6.87249 7.17727 7.37488 8.91444 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021219 B = 0.005873 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.228308 B = 4766.715837 C = 5349.644097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C 0.059 3.941 4 N -0.499 5.499 5 C 0.091 3.909 6 C 0.043 3.957 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.006 3.994 10 N -0.928 5.928 11 Si 0.963 3.037 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.006 4.006 16 C -0.117 4.117 17 C -0.181 4.181 18 C -0.076 4.076 19 C -0.204 4.204 20 C 0.227 3.773 21 N -0.863 5.863 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.050 0.950 31 H -0.005 1.005 32 H -0.004 1.004 33 H 0.264 0.736 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.404 0.596 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 -9.705 14.663 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.067 4.067 4 N -0.220 5.220 5 C -0.035 4.035 6 C 0.006 3.994 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.193 4.193 10 N -0.568 5.568 11 Si 0.788 3.212 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.104 4.104 16 C -0.137 4.137 17 C -0.201 4.201 18 C -0.094 4.094 19 C -0.227 4.227 20 C 0.119 3.881 21 N -0.402 5.402 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.013 0.987 32 H 0.014 0.986 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.151 0.849 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.233 0.767 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.860 -10.054 14.125 17.359 hybrid contribution -0.039 1.409 -0.559 1.516 sum 0.821 -8.645 13.566 16.107 Atomic orbital electron populations 1.21702 0.94456 1.02395 1.01743 1.21316 0.96151 0.95002 1.01520 1.22251 0.86550 0.98235 0.99694 1.59510 1.05978 1.29889 1.26594 1.21948 0.97974 0.87186 0.96413 1.18870 0.95005 0.94850 0.90712 1.21594 1.37257 1.03206 0.96376 0.92664 1.25895 0.95199 1.01264 0.96910 1.70092 1.42705 1.38454 1.05581 0.85479 0.78322 0.79326 0.78108 1.19766 1.20533 1.18960 1.18550 1.03787 0.98190 0.89870 1.21491 0.99635 0.98750 0.93857 1.20981 1.01815 0.99934 0.97397 1.21190 0.96207 0.93608 0.98422 1.20814 1.06222 1.04244 0.91415 1.17884 0.92295 0.89593 0.88297 1.42500 1.56328 1.31578 1.09765 0.91152 0.92341 0.93297 0.92472 0.92452 0.94618 0.92494 0.96310 0.93172 0.98704 0.98584 0.92732 0.87583 0.84941 0.83365 0.83952 0.76688 0.76891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.91 71.98 0.71 -2.87 16 2 C -0.10 -3.00 5.98 30.59 0.18 -2.82 16 3 C 0.06 2.09 4.74 86.30 0.41 2.50 16 4 N -0.50 -18.72 3.55 -694.62 -2.46 -21.18 16 5 C 0.09 4.08 4.48 86.30 0.39 4.46 16 6 C 0.04 2.34 5.04 29.85 0.15 2.49 16 7 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.01 0.33 5.46 84.66 0.46 0.79 16 10 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 11 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 15 C -0.01 -0.19 4.07 38.23 0.16 -0.03 16 16 C -0.12 -3.59 8.53 22.38 0.19 -3.40 16 17 C -0.18 -4.51 10.04 22.28 0.22 -4.29 16 18 C -0.08 -1.66 10.04 22.28 0.22 -1.43 16 19 C -0.20 -4.80 9.89 22.38 0.22 -4.57 16 20 C 0.23 6.57 6.78 38.23 0.26 6.83 16 21 N -0.86 -22.47 9.09 -50.96 -0.46 -22.93 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.06 1.65 7.84 -2.38 -0.02 1.63 16 27 H 0.04 1.20 6.71 -2.39 -0.02 1.18 16 28 H 0.06 2.30 6.25 -2.39 -0.01 2.28 16 29 H 0.02 0.84 7.84 -2.39 -0.02 0.82 16 30 H 0.05 2.30 7.97 -2.39 -0.02 2.28 16 31 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 32 H 0.00 -0.24 6.53 -2.39 -0.02 -0.25 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.11 3.34 7.29 -2.91 -0.02 3.32 16 35 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 38 H 0.40 7.86 8.85 -92.71 -0.82 7.04 16 39 H 0.40 12.02 8.11 -92.71 -0.75 11.27 16 Total: -1.00 -65.16 319.17 2.66 -62.50 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.54 Total: 25.23 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 3.81 Total: -33.89 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -2.64 Total: -100.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.16 2.66 -62.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063113794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.784 kcal (2) G-P(sol) polarization free energy of solvation -65.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds