Wall clock time and date at job start Mon Mar 30 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46843 * 2 1 4 4 C 1.50695 * 109.47379 * 119.99984 * 2 1 3 5 5 N 1.30753 * 125.61784 * 300.00717 * 4 2 1 6 6 C 1.33577 * 109.14666 * 179.97438 * 5 4 2 7 7 C 1.35027 * 107.97928 * 359.77981 * 6 5 4 8 8 N 1.35314 * 125.61680 * 119.99895 * 4 2 1 9 9 C 1.46506 * 126.49651 * 359.96586 * 8 4 2 10 10 C 1.50699 * 109.46888 * 90.02223 * 9 8 4 11 11 H 1.08002 * 120.00516 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99783 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99707 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99956 * 180.27458 * 12 10 9 15 15 H 1.48503 * 109.47407 * 269.72718 * 14 12 10 16 16 H 1.48505 * 109.47281 * 29.72474 * 14 12 10 17 17 H 1.48501 * 109.47274 * 149.72572 * 14 12 10 18 18 C 1.50656 * 124.44995 * 179.47526 * 7 6 5 19 19 C 1.53403 * 108.45136 * 344.17046 * 18 7 6 20 20 C 1.53127 * 109.44054 * 49.40544 * 19 18 7 21 21 C 1.50867 * 128.03112 * 180.13043 * 6 5 4 22 22 H 1.08999 * 109.47533 * 299.99523 * 1 2 3 23 23 H 1.08993 * 109.47676 * 60.00167 * 1 2 3 24 24 H 1.09003 * 109.47210 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47225 * 240.00308 * 2 1 3 26 26 H 1.09002 * 109.47077 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.47355 * 300.00433 * 3 2 1 28 28 H 1.09006 * 109.46745 * 60.00630 * 3 2 1 29 29 H 1.09001 * 109.46452 * 330.02481 * 9 8 4 30 30 H 1.08997 * 109.46855 * 210.02399 * 9 8 4 31 31 H 0.97005 * 119.99656 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.84038 * 224.31105 * 18 7 6 33 33 H 1.09000 * 109.46125 * 103.80161 * 18 7 6 34 34 H 1.08995 * 109.47522 * 289.41896 * 19 18 7 35 35 H 1.09001 * 109.47733 * 169.39788 * 19 18 7 36 36 H 1.08999 * 109.46029 * 169.95768 * 20 19 18 37 37 H 1.09003 * 109.45730 * 49.99574 * 20 19 18 38 38 H 1.09004 * 109.67591 * 283.02287 * 21 6 5 39 39 H 1.08999 * 109.67692 * 43.52374 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7850 -0.3608 2.4658 6 6 2.3902 -1.2174 3.2930 7 6 3.0341 -2.1370 2.5427 8 7 2.8136 -1.8152 1.2387 9 6 3.3202 -2.5330 0.0663 10 6 4.6543 -1.9591 -0.3362 11 1 5.0818 -1.1412 0.2248 12 6 5.3291 -2.4782 -1.4208 13 7 4.8082 -3.4738 -2.1043 14 14 6.9862 -1.7720 -1.9151 15 1 6.7840 -0.6704 -2.8903 16 1 7.6793 -1.2464 -0.7115 17 1 7.8130 -2.8376 -2.5366 18 6 3.8493 -3.2739 3.1020 19 6 4.1455 -2.9788 4.5779 20 6 2.8468 -2.5919 5.2909 21 6 2.3842 -1.2141 4.8017 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 2.6150 -2.4259 -0.7579 30 1 3.4374 -3.5890 0.3095 31 1 5.2828 -3.8388 -2.8675 32 1 4.7852 -3.3642 2.5506 33 1 3.2831 -4.2016 3.0195 34 1 4.8576 -2.1566 4.6483 35 1 4.5679 -3.8667 5.0484 36 1 3.0198 -2.5562 6.3665 37 1 2.0776 -3.3324 5.0714 38 1 3.0649 -0.4464 5.1697 39 1 1.3758 -1.0149 5.1643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076095494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:14 Heat of formation + Delta-G solvation = 2.709179 kcal Electronic energy + Delta-G solvation = -18743.753644 eV Core-core repulsion = 16070.879776 eV Total energy + Delta-G solvation = -2672.873868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.12504 -37.81622 -36.07422 -35.66504 -34.13271 -31.17979 -29.32376 -29.00988 -28.01536 -25.34671 -24.70348 -22.86182 -22.38761 -20.04616 -19.74292 -18.84861 -17.59827 -16.55925 -16.42382 -15.81477 -15.45875 -15.06812 -14.72773 -14.46393 -14.36826 -14.17045 -13.82628 -13.71370 -13.55693 -13.12221 -13.01812 -12.77801 -12.64120 -12.37582 -12.29065 -12.08958 -11.90475 -11.83067 -11.66717 -11.60468 -11.57789 -10.81084 -10.59886 -10.17779 -8.76274 -8.39751 -6.56358 1.28082 1.33735 1.36616 1.46612 2.18171 2.23722 2.34452 2.91865 3.48202 3.77660 3.99875 4.03669 4.05927 4.26195 4.28047 4.34963 4.49275 4.58065 4.62447 4.71704 4.78614 4.81962 4.86202 4.92948 4.95673 4.98954 5.06230 5.08922 5.16182 5.22563 5.32391 5.35810 5.46590 5.49667 5.50577 5.75403 5.89344 6.11884 6.37602 6.64067 7.15788 7.35147 8.68050 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.008974 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.031053 B = 3119.332760 C = 4231.970211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.011 4.011 3 C -0.123 4.123 4 C 0.185 3.815 5 N -0.509 5.509 6 C -0.033 4.033 7 C -0.048 4.048 8 N -0.433 5.433 9 C 0.252 3.748 10 C -0.550 4.550 11 H 0.047 0.953 12 C 0.026 3.974 13 N -0.915 5.915 14 Si 0.967 3.033 15 H -0.268 1.268 16 H -0.273 1.273 17 H -0.272 1.272 18 C -0.040 4.040 19 C -0.103 4.103 20 C -0.107 4.107 21 C -0.023 4.023 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.274 0.726 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 2.831 8.915 10.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.032 4.032 3 C -0.181 4.181 4 C -0.076 4.076 5 N -0.228 5.228 6 C -0.165 4.165 7 C -0.165 4.165 8 N -0.111 5.111 9 C 0.131 3.869 10 C -0.588 4.588 11 H 0.065 0.935 12 C -0.175 4.175 13 N -0.553 5.553 14 Si 0.790 3.210 15 H -0.193 1.193 16 H -0.198 1.198 17 H -0.197 1.197 18 C -0.079 4.079 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.062 4.062 22 H 0.081 0.919 23 H 0.104 0.896 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.191 3.275 8.837 10.315 hybrid contribution 1.393 -0.670 -1.143 1.922 sum -2.798 2.605 7.695 8.592 Atomic orbital electron populations 1.21665 0.91864 1.01459 1.03164 1.19585 0.97318 0.95982 0.90266 1.21632 0.99823 0.93703 1.02982 1.23511 0.98466 0.89916 0.95752 1.69743 1.25742 1.28247 0.99105 1.21049 1.02938 0.95032 0.97443 1.21445 1.07660 1.03815 0.83612 1.45550 1.35925 1.22165 1.07421 1.19258 0.94625 0.91711 0.81289 1.21302 1.04255 1.18837 1.14422 0.93477 1.25696 1.01741 0.94774 0.95302 1.70002 1.40459 1.25174 1.19689 0.85421 0.78547 0.78472 0.78519 1.19322 1.19783 1.19686 1.20097 0.97087 0.93409 0.97269 1.21528 0.98272 1.02433 0.91882 1.21561 0.96742 0.95329 1.00845 1.19947 1.01946 0.98671 0.85598 0.91895 0.89565 0.94071 0.91420 0.94881 0.89597 0.91929 0.94897 0.95397 0.91711 0.92720 0.91024 0.92264 0.88711 0.88190 0.91996 0.90884 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 9.18 71.98 0.66 -3.16 16 2 C -0.01 -0.42 3.25 -11.54 -0.04 -0.46 16 3 C -0.12 -4.13 9.18 71.98 0.66 -3.47 16 4 C 0.18 8.25 6.42 137.97 0.89 9.13 16 5 N -0.51 -22.23 11.25 -175.89 -1.98 -24.21 16 6 C -0.03 -1.36 6.98 41.61 0.29 -1.07 16 7 C -0.05 -2.06 6.73 41.14 0.28 -1.78 16 8 N -0.43 -20.72 2.73 -503.86 -1.37 -22.10 16 9 C 0.25 13.15 5.43 85.63 0.46 13.62 16 10 C -0.55 -30.42 9.39 25.60 0.24 -30.18 16 11 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 12 C 0.03 1.42 5.46 84.66 0.46 1.89 16 13 N -0.92 -51.12 13.29 21.45 0.28 -50.84 16 14 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C -0.04 -1.45 5.96 29.97 0.18 -1.27 16 19 C -0.10 -2.74 5.91 30.77 0.18 -2.56 16 20 C -0.11 -2.53 5.89 30.75 0.18 -2.35 16 21 C -0.02 -0.69 6.30 30.02 0.19 -0.51 16 22 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 2.82 6.74 -2.39 -0.02 2.81 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.03 1.79 7.06 -2.39 -0.02 1.77 16 30 H 0.03 1.53 7.99 -2.39 -0.02 1.51 16 31 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 38 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -63.55 316.04 4.60 -58.95 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.00 Total: 15.76 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 4.63 Total: -22.17 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.07 Total: -97.14 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -63.55 4.60 -58.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076095494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.661 kcal (2) G-P(sol) polarization free energy of solvation -63.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds