Wall clock time and date at job start Mon Mar 30 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47174 * 2 1 4 4 C 1.53004 * 109.47140 * 239.99818 * 2 1 3 5 5 N 1.46508 * 109.47195 * 120.00149 * 2 1 3 6 6 N 1.40299 * 126.08820 * 234.18398 * 5 2 1 7 7 C 1.31070 * 108.26416 * 179.91445 * 6 5 2 8 8 C 1.39295 * 108.08143 * 0.02562 * 7 6 5 9 9 C 1.34322 * 126.09222 * 54.15418 * 5 2 1 10 10 C 1.50823 * 128.03314 * 0.14262 * 9 5 2 11 11 C 1.53370 * 108.38002 * 163.43882 * 10 9 5 12 12 C 1.53109 * 109.49960 * 49.94311 * 11 10 9 13 13 C 1.50842 * 127.89553 * 180.16435 * 8 7 6 14 14 H 1.09001 * 109.68005 * 283.09609 * 13 8 7 15 15 C 1.50693 * 109.68434 * 43.62041 * 13 8 7 16 16 H 1.08005 * 120.00494 * 35.06291 * 15 13 8 17 17 C 1.37883 * 119.99964 * 215.05988 * 15 13 8 18 18 N 1.31511 * 119.99873 * 354.91004 * 17 15 13 19 19 Si 1.86802 * 119.99949 * 174.91051 * 17 15 13 20 20 H 1.48497 * 109.47126 * 60.00229 * 19 17 15 21 21 H 1.48498 * 109.47047 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47123 * 299.99778 * 19 17 15 23 23 H 1.08998 * 109.46998 * 299.99869 * 1 2 3 24 24 H 1.09001 * 109.47165 * 60.00101 * 1 2 3 25 25 H 1.09007 * 109.47199 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47418 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46992 * 300.00004 * 3 2 1 28 28 H 1.09007 * 109.47066 * 59.99880 * 3 2 1 29 29 H 1.08995 * 109.46977 * 305.46701 * 4 2 1 30 30 H 1.08993 * 109.46933 * 65.47478 * 4 2 1 31 31 H 1.09001 * 109.46746 * 185.47144 * 4 2 1 32 32 H 1.08001 * 125.95406 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.68339 * 43.72000 * 10 9 5 34 34 H 1.09000 * 109.68693 * 283.15876 * 10 9 5 35 35 H 1.09002 * 109.46499 * 169.95013 * 11 10 9 36 36 H 1.08993 * 109.46668 * 289.93456 * 11 10 9 37 37 H 1.09001 * 109.46246 * 49.72990 * 12 11 10 38 38 H 1.08998 * 109.46565 * 169.70306 * 12 11 10 39 39 H 0.96998 * 119.99734 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 7 2.9193 -0.1735 2.1391 7 6 3.1125 -1.0819 3.0640 8 6 2.3456 -2.1987 2.7400 9 6 1.6828 -1.9316 1.5858 10 6 0.7466 -2.8982 0.9047 11 6 0.9991 -4.2993 1.4751 12 6 0.9838 -4.2386 3.0049 13 6 2.2314 -3.4965 3.5002 14 1 3.1176 -4.1056 3.3218 15 6 2.0996 -3.2115 4.9741 16 1 1.5554 -2.3409 5.3093 17 6 2.6738 -4.0622 5.8948 18 7 3.2498 -5.1741 5.4930 19 14 2.6335 -3.6354 7.7130 20 1 1.2232 -3.5189 8.1629 21 1 3.3140 -4.7041 8.4875 22 1 3.3320 -2.3436 7.9338 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.5989 -1.7168 -1.2995 30 1 1.7589 -0.1540 -2.1365 31 1 3.1256 -0.8069 -1.2015 32 1 3.7544 -0.9819 3.9268 33 1 0.9369 -2.8991 -0.1686 34 1 -0.2859 -2.6050 1.0948 35 1 0.2186 -4.9778 1.1307 36 1 1.9699 -4.6602 1.1356 37 1 0.0903 -3.7110 3.3386 38 1 0.9796 -5.2511 3.4086 39 1 3.6540 -5.7724 6.1407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082825387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:42 Heat of formation + Delta-G solvation = 54.830227 kcal Electronic energy + Delta-G solvation = -18920.471839 eV Core-core repulsion = 16249.858109 eV Total energy + Delta-G solvation = -2670.613730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82882 -36.74367 -35.53526 -32.81862 -30.54025 -28.73791 -28.29476 -27.43257 -26.99003 -24.86861 -21.92620 -21.75122 -20.56361 -18.69601 -17.62542 -16.38564 -15.76265 -14.86358 -14.49291 -14.37011 -14.16621 -13.65163 -13.18313 -12.75230 -12.56292 -12.32012 -12.21365 -12.17213 -11.99218 -11.76502 -11.74676 -11.30421 -11.08878 -10.95671 -10.90407 -10.78004 -10.38342 -10.05782 -9.91577 -9.53001 -9.00906 -9.00053 -8.38738 -8.34177 -7.14623 -5.93716 -3.96382 2.67859 3.09019 3.37094 3.41566 3.44863 3.88953 4.51090 4.62911 4.85181 4.94402 5.19647 5.33959 5.40216 5.46078 5.51388 5.58584 5.63362 5.73589 5.75961 5.83459 5.87379 5.98469 6.15442 6.21560 6.28824 6.33802 6.47721 6.57228 6.72180 6.77424 7.01218 7.17265 7.33515 7.71943 7.73316 7.85523 8.00650 8.04975 8.52599 8.67461 9.13133 9.66927 11.14175 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031622 B = 0.006808 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.251740 B = 4111.858335 C = 4616.025276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 C -0.138 4.138 4 C -0.162 4.162 5 N -0.370 5.370 6 N -0.322 5.322 7 C 0.060 3.940 8 C -0.180 4.180 9 C 0.047 3.953 10 C -0.046 4.046 11 C -0.117 4.117 12 C -0.102 4.102 13 C 0.105 3.895 14 H 0.062 0.938 15 C -0.500 4.500 16 H 0.052 0.948 17 C 0.064 3.936 18 N -0.894 5.894 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.277 1.277 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.176 0.824 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 6.882 -12.513 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.102 3.898 3 C -0.195 4.195 4 C -0.220 4.220 5 N -0.155 5.155 6 N -0.143 5.143 7 C -0.124 4.124 8 C -0.190 4.190 9 C -0.079 4.079 10 C -0.084 4.084 11 C -0.155 4.155 12 C -0.141 4.141 13 C 0.085 3.915 14 H 0.080 0.920 15 C -0.538 4.538 16 H 0.071 0.929 17 C -0.137 4.137 18 N -0.532 5.532 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.202 1.202 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.193 0.807 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.329 7.971 -12.949 15.810 hybrid contribution -0.196 -0.579 1.405 1.532 sum -4.525 7.392 -11.544 14.435 Atomic orbital electron populations 1.22334 0.93709 1.03500 1.02697 1.20420 0.93742 0.93191 0.82475 1.21829 1.02440 0.93257 1.02014 1.22308 1.02288 1.01132 0.96237 1.48317 1.36314 1.11135 1.19733 1.77301 1.11778 1.23203 1.02035 1.23559 0.99704 0.91662 0.97474 1.20846 1.01583 1.00423 0.96191 1.20754 1.01958 0.87329 0.97811 1.20348 0.96505 0.93847 0.97730 1.21670 1.00876 0.93782 0.99134 1.21741 1.00425 1.01054 0.90842 1.17464 0.94522 0.87028 0.92460 0.92044 1.21007 1.33460 1.09034 0.90332 0.92929 1.24973 0.95206 0.94943 0.98613 1.69925 1.38195 1.10915 1.34206 0.86734 0.78165 0.78019 0.85530 1.20386 1.21428 1.20244 0.91848 0.91011 0.91200 0.91431 0.91800 0.91698 0.91582 0.91092 0.91829 0.80689 0.91854 0.91211 0.92911 0.92235 0.93855 0.92379 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.41 37.16 0.31 -1.62 16 2 C 0.19 2.54 1.11 -131.82 -0.15 2.39 16 3 C -0.14 -1.72 8.01 37.16 0.30 -1.43 16 4 C -0.16 -1.89 8.53 37.16 0.32 -1.57 16 5 N -0.37 -6.76 3.45 -44.53 -0.15 -6.92 16 6 N -0.32 -6.65 11.66 30.54 0.36 -6.30 16 7 C 0.06 1.33 11.56 -17.48 -0.20 1.13 16 8 C -0.18 -4.10 5.42 -105.05 -0.57 -4.67 16 9 C 0.05 0.92 6.21 -82.34 -0.51 0.41 16 10 C -0.05 -0.74 4.45 -27.63 -0.12 -0.86 16 11 C -0.12 -2.07 5.90 -26.48 -0.16 -2.23 16 12 C -0.10 -2.27 5.20 -26.48 -0.14 -2.40 16 13 C 0.10 2.62 2.56 -92.66 -0.24 2.38 16 14 H 0.06 1.72 7.38 -51.93 -0.38 1.33 16 15 C -0.50 -13.65 7.97 -34.44 -0.27 -13.93 16 16 H 0.05 1.46 7.82 -52.48 -0.41 1.05 16 17 C 0.06 1.77 5.45 -17.82 -0.10 1.67 16 18 N -0.89 -25.69 12.84 55.43 0.71 -24.97 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.83 5.35 -51.93 -0.28 0.55 16 26 H 0.07 0.92 8.12 -51.93 -0.42 0.49 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.77 5.75 -51.93 -0.30 0.47 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.18 3.77 8.06 -52.49 -0.42 3.34 16 33 H 0.06 0.88 5.79 -51.93 -0.30 0.58 16 34 H 0.07 1.06 7.15 -51.93 -0.37 0.69 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 37 H 0.04 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -29.92 304.65 -7.29 -37.21 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.24 Total: 0.76 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -1.53 Total: -20.73 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.91 Total: -38.19 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.92 -7.29 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.038 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds