Wall clock time and date at job start Mon Mar 30 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47231 * 2 1 4 4 C 1.50702 * 109.47448 * 120.00103 * 2 1 3 5 5 N 1.31074 * 125.95591 * 300.02370 * 4 2 1 6 6 N 1.40297 * 108.26839 * 179.97438 * 5 4 2 7 7 C 1.46495 * 126.09258 * 179.97438 * 6 5 4 8 8 C 1.34329 * 107.81522 * 359.93929 * 6 5 4 9 9 C 1.35749 * 107.84395 * 0.07894 * 8 6 5 10 10 C 1.50838 * 124.10853 * 179.86338 * 9 8 6 11 11 H 1.09000 * 109.68266 * 103.15767 * 10 9 8 12 12 C 1.50694 * 109.68306 * 223.68040 * 10 9 8 13 13 H 1.08000 * 120.00420 * 359.97438 * 12 10 9 14 14 C 1.37882 * 120.00353 * 180.02562 * 12 10 9 15 15 N 1.31522 * 119.99672 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00395 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47502 * 89.99398 * 16 14 12 18 18 H 1.48498 * 109.47050 * 209.99900 * 16 14 12 19 19 H 1.48506 * 109.46830 * 329.99245 * 16 14 12 20 20 C 1.53371 * 108.38000 * 343.43905 * 10 9 8 21 21 C 1.53102 * 109.50894 * 49.95055 * 20 10 9 22 22 C 1.50826 * 128.03424 * 180.12077 * 8 6 5 23 23 H 1.08993 * 109.47130 * 60.00291 * 1 2 3 24 24 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46800 * 300.00317 * 1 2 3 26 26 H 1.09007 * 109.47423 * 239.99636 * 2 1 3 27 27 H 1.09005 * 109.47693 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47227 * 299.99513 * 3 2 1 29 29 H 1.08995 * 109.47487 * 60.00104 * 3 2 1 30 30 H 1.08997 * 109.47457 * 90.02550 * 7 6 5 31 31 H 1.09006 * 109.47130 * 210.02637 * 7 6 5 32 32 H 1.09005 * 109.47214 * 330.01756 * 7 6 5 33 33 H 0.96989 * 119.99714 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.46515 * 169.96479 * 20 10 9 35 35 H 1.09001 * 109.46235 * 289.94625 * 20 10 9 36 36 H 1.08991 * 109.47222 * 49.73911 * 21 20 10 37 37 H 1.09000 * 109.46116 * 169.72018 * 21 20 10 38 38 H 1.09004 * 109.67917 * 43.67427 * 22 8 6 39 39 H 1.09000 * 109.71588 * 283.14428 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7885 -0.3662 2.4714 6 7 2.4347 -1.2807 3.3166 7 6 2.4206 -1.2608 4.7814 8 6 3.0680 -2.1783 2.5435 9 6 2.8361 -1.8479 1.2474 10 6 3.3813 -2.6149 0.0685 11 1 2.5931 -3.2301 -0.3655 12 6 3.9016 -1.6516 -0.9670 13 1 3.8442 -0.5874 -0.7919 14 6 4.4500 -2.1287 -2.1387 15 7 4.5195 -3.4246 -2.3523 16 14 5.0956 -0.9347 -3.4220 17 1 6.5290 -0.6511 -3.1577 18 1 4.9504 -1.5338 -4.7730 19 1 4.3203 0.3302 -3.3556 20 6 4.5239 -3.5114 0.5614 21 6 4.0589 -4.3061 1.7846 22 6 3.8988 -3.3589 2.9801 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.5782 -1.8492 5.1447 31 1 3.3506 -1.6856 5.1595 32 1 2.3230 -0.2326 5.1299 33 1 4.9056 -3.7602 -3.1763 34 1 4.8124 -4.2012 -0.2318 35 1 5.3792 -2.8930 0.8337 36 1 3.1025 -4.7814 1.5671 37 1 4.7983 -5.0706 2.0235 38 1 3.3971 -3.8792 3.7960 39 1 4.8792 -3.0164 3.3111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082825668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:32 Heat of formation + Delta-G solvation = 49.213844 kcal Electronic energy + Delta-G solvation = -19084.980353 eV Core-core repulsion = 16414.123078 eV Total energy + Delta-G solvation = -2670.857275 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75454 -35.80263 -35.32705 -32.57982 -31.83420 -29.23735 -28.48787 -26.54179 -25.76051 -24.84585 -22.19782 -21.23692 -20.77831 -18.19837 -17.59097 -16.46958 -15.66382 -14.96215 -14.49193 -13.95444 -13.89387 -13.44757 -12.93110 -12.82501 -12.65159 -12.56596 -12.21270 -12.08592 -11.94614 -11.60243 -11.09747 -10.94806 -10.76076 -10.68496 -10.49880 -10.40871 -10.18010 -9.91448 -9.77810 -9.52161 -9.19907 -8.69740 -8.31188 -8.26973 -7.15176 -5.92652 -3.95303 2.62287 3.17577 3.34696 3.41887 3.45049 3.75656 4.50380 4.98700 5.25842 5.36526 5.39275 5.45580 5.58094 5.60916 5.69647 5.72761 5.88604 6.04454 6.16320 6.20130 6.30190 6.37146 6.39821 6.54505 6.56996 6.64969 6.71006 6.76790 6.89213 7.07798 7.19732 7.20623 7.45708 7.71932 7.77534 7.87098 8.05543 8.14353 8.51390 8.64765 9.07038 9.67220 11.13766 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.010215 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.901151 B = 2740.401690 C = 3825.735309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 C -0.135 4.135 4 C 0.098 3.902 5 N -0.319 5.319 6 N -0.387 5.387 7 C 0.112 3.888 8 C 0.047 3.953 9 C -0.178 4.178 10 C 0.116 3.884 11 H 0.033 0.967 12 C -0.500 4.500 13 H 0.062 0.938 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.884 3.116 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.272 1.272 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.044 4.044 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.120 0.880 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.258 0.742 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 1.889 9.185 9.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.044 4.044 3 C -0.193 4.193 4 C -0.066 4.066 5 N -0.141 5.141 6 N -0.170 5.170 7 C -0.031 4.031 8 C -0.078 4.078 9 C -0.188 4.188 10 C 0.097 3.903 11 H 0.051 0.949 12 C -0.538 4.538 13 H 0.081 0.919 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.712 3.288 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.143 4.143 21 C -0.154 4.154 22 C -0.083 4.083 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.138 0.862 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.726 2.590 9.992 10.974 hybrid contribution 0.883 0.049 -0.942 1.292 sum -2.843 2.639 9.050 9.846 Atomic orbital electron populations 1.21775 0.95482 1.01365 1.00867 1.19853 0.94380 0.95198 0.94957 1.21731 1.01382 0.95556 1.00618 1.21876 0.97047 0.95322 0.92389 1.77231 1.21465 1.14494 1.00907 1.47899 1.41337 1.22501 1.05279 1.21558 1.02126 1.03297 0.76102 1.20862 1.00288 0.95022 0.91621 1.20616 1.04303 0.99269 0.94649 1.17290 0.92804 0.92304 0.87893 0.94881 1.21211 1.38730 0.93103 1.00767 0.91943 1.24949 0.96004 0.94911 0.98022 1.69905 1.45659 1.11715 1.25762 0.86715 0.79355 0.81599 0.81145 1.20932 1.21388 1.19695 1.21663 0.99048 0.98807 0.94786 1.21676 1.00855 0.97062 0.95785 1.20209 0.97225 0.92228 0.98645 0.92863 0.93012 0.93208 0.86213 0.92611 0.92991 0.93303 0.91971 0.90498 0.90253 0.93160 0.89511 0.94201 0.92539 0.92921 0.92228 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.18 37.16 0.34 -1.99 16 2 C -0.02 -0.47 2.48 -91.77 -0.23 -0.70 16 3 C -0.13 -2.43 9.08 37.15 0.34 -2.09 16 4 C 0.10 2.14 5.50 -82.52 -0.45 1.69 16 5 N -0.32 -6.65 12.59 33.59 0.42 -6.23 16 6 N -0.39 -7.26 4.00 -63.88 -0.26 -7.52 16 7 C 0.11 1.44 11.32 59.84 0.68 2.12 16 8 C 0.05 0.95 6.73 -82.33 -0.55 0.40 16 9 C -0.18 -4.06 5.41 -105.06 -0.57 -4.63 16 10 C 0.12 2.88 2.35 -92.67 -0.22 2.66 16 11 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.50 -13.19 6.68 -34.44 -0.23 -13.42 16 13 H 0.06 1.65 5.81 -52.49 -0.31 1.35 16 14 C 0.06 1.66 5.31 -17.81 -0.09 1.57 16 15 N -0.89 -24.68 11.55 55.43 0.64 -24.04 16 16 Si 0.88 20.90 29.54 -169.99 -5.02 15.88 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.10 -2.41 4.84 -26.49 -0.13 -2.54 16 21 C -0.12 -2.14 5.90 -26.49 -0.16 -2.29 16 22 C -0.04 -0.74 5.83 -27.63 -0.16 -0.90 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.12 2.65 5.63 -51.92 -0.29 2.36 16 27 H 0.05 1.07 7.77 -51.93 -0.40 0.67 16 28 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.09 2.18 6.52 -51.93 -0.34 1.85 16 35 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.06 1.06 8.11 -51.93 -0.42 0.64 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -29.47 307.30 -7.39 -36.87 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.38 Total: 0.54 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.44 Total: -20.14 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.81 Total: -37.78 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.47 -7.39 -36.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.082 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds