Wall clock time and date at job start Mon Mar 30 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47231 * 2 1 4 4 C 1.50702 * 109.47448 * 120.00103 * 2 1 3 5 5 N 1.31074 * 125.95591 * 300.02370 * 4 2 1 6 6 N 1.40297 * 108.26839 * 179.97438 * 5 4 2 7 7 C 1.46495 * 126.09258 * 179.97438 * 6 5 4 8 8 C 1.34329 * 107.81522 * 359.93929 * 6 5 4 9 9 C 1.35749 * 107.84395 * 0.07894 * 8 6 5 10 10 C 1.50838 * 124.10853 * 179.86338 * 9 8 6 11 11 H 1.09000 * 109.68266 * 103.15767 * 10 9 8 12 12 C 1.50694 * 109.68306 * 223.68040 * 10 9 8 13 13 H 1.08000 * 120.00420 * 359.97438 * 12 10 9 14 14 C 1.37882 * 120.00353 * 180.02562 * 12 10 9 15 15 N 1.31522 * 119.99672 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00395 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47502 * 89.99398 * 16 14 12 18 18 H 1.48498 * 109.47050 * 209.99900 * 16 14 12 19 19 H 1.48506 * 109.46830 * 329.99245 * 16 14 12 20 20 C 1.53371 * 108.38000 * 343.43905 * 10 9 8 21 21 C 1.53102 * 109.50894 * 49.95055 * 20 10 9 22 22 C 1.50826 * 128.03424 * 180.12077 * 8 6 5 23 23 H 1.08993 * 109.47130 * 60.00291 * 1 2 3 24 24 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46800 * 300.00317 * 1 2 3 26 26 H 1.09007 * 109.47423 * 239.99636 * 2 1 3 27 27 H 1.09005 * 109.47693 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47227 * 299.99513 * 3 2 1 29 29 H 1.08995 * 109.47487 * 60.00104 * 3 2 1 30 30 H 1.08997 * 109.47457 * 90.02550 * 7 6 5 31 31 H 1.09006 * 109.47130 * 210.02637 * 7 6 5 32 32 H 1.09005 * 109.47214 * 330.01756 * 7 6 5 33 33 H 0.96989 * 119.99714 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.46515 * 169.96479 * 20 10 9 35 35 H 1.09001 * 109.46235 * 289.94625 * 20 10 9 36 36 H 1.08991 * 109.47222 * 49.73911 * 21 20 10 37 37 H 1.09000 * 109.46116 * 169.72018 * 21 20 10 38 38 H 1.09004 * 109.67917 * 43.67427 * 22 8 6 39 39 H 1.09000 * 109.71588 * 283.14428 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7885 -0.3662 2.4714 6 7 2.4347 -1.2807 3.3166 7 6 2.4206 -1.2608 4.7814 8 6 3.0680 -2.1783 2.5435 9 6 2.8361 -1.8479 1.2474 10 6 3.3813 -2.6149 0.0685 11 1 2.5931 -3.2301 -0.3655 12 6 3.9016 -1.6516 -0.9670 13 1 3.8442 -0.5874 -0.7919 14 6 4.4500 -2.1287 -2.1387 15 7 4.5195 -3.4246 -2.3523 16 14 5.0956 -0.9347 -3.4220 17 1 6.5290 -0.6511 -3.1577 18 1 4.9504 -1.5338 -4.7730 19 1 4.3203 0.3302 -3.3556 20 6 4.5239 -3.5114 0.5614 21 6 4.0589 -4.3061 1.7846 22 6 3.8988 -3.3589 2.9801 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.5782 -1.8492 5.1447 31 1 3.3506 -1.6856 5.1595 32 1 2.3230 -0.2326 5.1299 33 1 4.9056 -3.7602 -3.1763 34 1 4.8124 -4.2012 -0.2318 35 1 5.3792 -2.8930 0.8337 36 1 3.1025 -4.7814 1.5671 37 1 4.7983 -5.0706 2.0235 38 1 3.3971 -3.8792 3.7960 39 1 4.8792 -3.0164 3.3111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082825668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:31 Heat of formation + Delta-G solvation = 32.961751 kcal Electronic energy + Delta-G solvation = -19085.685096 eV Core-core repulsion = 16414.123078 eV Total energy + Delta-G solvation = -2671.562018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.30059 -37.48034 -36.82601 -34.45570 -33.25911 -30.94386 -30.07775 -27.96304 -27.09655 -26.73778 -23.78026 -22.81630 -22.44688 -19.79170 -19.16017 -18.34522 -17.29000 -16.41100 -16.34856 -15.43316 -15.34903 -14.94045 -14.52352 -14.38951 -14.16550 -14.09683 -13.79260 -13.39100 -13.32731 -13.00596 -12.82806 -12.68955 -12.52520 -12.32351 -12.03811 -11.97358 -11.85568 -11.64184 -11.40658 -11.26553 -10.98515 -10.60019 -10.32648 -9.74378 -8.80627 -7.97470 -6.06331 1.09420 1.43679 1.45710 1.54912 1.84680 2.09267 2.51771 3.28740 3.72412 3.85247 4.06980 4.23033 4.27402 4.32746 4.40680 4.48390 4.65197 4.70306 4.73886 4.80779 4.84576 4.91450 4.98023 4.99526 5.03613 5.08062 5.13565 5.23181 5.38531 5.41755 5.44068 5.62563 5.70946 5.77178 6.06378 6.07480 6.18512 6.42465 6.56140 6.99382 7.05608 7.58202 9.06961 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.010215 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.901151 B = 2740.401690 C = 3825.735309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.028 4.028 3 C -0.126 4.126 4 C 0.084 3.916 5 N -0.332 5.332 6 N -0.380 5.380 7 C 0.098 3.902 8 C 0.058 3.942 9 C -0.229 4.229 10 C 0.120 3.880 11 H -0.009 1.009 12 C -0.504 4.504 13 H 0.056 0.944 14 C 0.016 3.984 15 N -0.918 5.918 16 Si 0.938 3.062 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.265 1.265 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.038 4.038 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.258 0.742 34 H 0.056 0.944 35 H 0.026 0.974 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 2.476 11.395 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.049 4.049 3 C -0.184 4.184 4 C -0.080 4.080 5 N -0.155 5.155 6 N -0.163 5.163 7 C -0.042 4.042 8 C -0.070 4.070 9 C -0.240 4.240 10 C 0.101 3.899 11 H 0.009 0.991 12 C -0.542 4.542 13 H 0.074 0.926 14 C -0.182 4.182 15 N -0.559 5.559 16 Si 0.765 3.235 17 H -0.208 1.208 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.077 4.077 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.794 3.197 12.228 13.197 hybrid contribution 0.877 -0.151 -1.536 1.775 sum -2.918 3.046 10.692 11.494 Atomic orbital electron populations 1.21689 0.93404 1.01122 1.02275 1.19822 0.96152 0.95684 0.93222 1.21652 0.99987 0.94675 1.02069 1.22081 0.97221 0.95398 0.93293 1.77147 1.22254 1.15462 1.00656 1.48343 1.39609 1.21142 1.07201 1.22066 1.04707 1.04931 0.72494 1.21280 0.99263 0.95460 0.91016 1.20571 1.07139 1.00925 0.95329 1.17059 0.92118 0.92060 0.88691 0.99085 1.21443 1.38084 0.93146 1.01528 0.92616 1.25609 0.96528 0.96275 0.99818 1.70034 1.46632 1.13058 1.26131 0.85842 0.78702 0.80022 0.78931 1.20771 1.21149 1.18955 1.21447 0.97864 0.98121 0.96142 1.21573 1.01105 0.97487 0.94519 1.20314 0.98065 0.90659 0.98641 0.90590 0.94084 0.92531 0.89430 0.94629 0.90841 0.92438 0.89771 0.87546 0.89133 0.93329 0.92511 0.95556 0.93264 0.89985 0.88114 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.18 71.98 0.66 -3.62 16 2 C -0.03 -1.15 2.48 -11.54 -0.03 -1.18 16 3 C -0.13 -4.50 9.08 71.98 0.65 -3.84 16 4 C 0.08 3.68 5.50 42.93 0.24 3.91 16 5 N -0.33 -13.48 12.59 -47.63 -0.60 -14.08 16 6 N -0.38 -13.30 4.00 -356.01 -1.42 -14.73 16 7 C 0.10 2.12 11.32 127.77 1.45 3.56 16 8 C 0.06 2.21 6.73 41.64 0.28 2.49 16 9 C -0.23 -10.60 5.41 -20.15 -0.11 -10.71 16 10 C 0.12 6.22 2.35 -12.12 -0.03 6.19 16 11 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 12 C -0.50 -27.73 6.68 25.60 0.17 -27.56 16 13 H 0.06 3.08 5.81 -2.91 -0.02 3.06 16 14 C 0.02 0.87 5.31 84.65 0.45 1.32 16 15 N -0.92 -52.91 11.55 21.45 0.25 -52.66 16 16 Si 0.94 43.90 29.54 68.60 2.03 45.93 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 C -0.10 -4.59 4.84 30.75 0.15 -4.44 16 21 C -0.11 -3.87 5.90 30.75 0.18 -3.69 16 22 C -0.04 -1.15 5.83 30.01 0.17 -0.97 16 23 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.09 4.07 5.63 -2.38 -0.01 4.06 16 27 H 0.03 1.37 7.77 -2.38 -0.02 1.36 16 28 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.11 1.71 7.90 -2.38 -0.02 1.69 16 32 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.26 14.21 8.31 -92.72 -0.77 13.44 16 34 H 0.06 2.98 6.52 -2.39 -0.02 2.96 16 35 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 36 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -66.75 307.30 5.50 -61.25 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.01 Total: 12.84 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 4.24 Total: -38.54 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.78 Total: -81.47 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.75 5.50 -61.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.207 kcal (2) G-P(sol) polarization free energy of solvation -66.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds