Wall clock time and date at job start Mon Mar 30 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47044 * 2 1 4 4 C 1.50697 * 109.47102 * 120.00031 * 2 1 3 5 5 N 1.31073 * 125.95935 * 300.00301 * 4 2 1 6 6 N 1.40295 * 108.26585 * 179.97438 * 5 4 2 7 7 C 1.46500 * 126.08864 * 180.02562 * 6 5 4 8 8 C 1.34318 * 107.82037 * 0.05579 * 6 5 4 9 9 C 1.35753 * 107.84663 * 359.91001 * 8 6 5 10 10 C 1.50832 * 124.11361 * 180.10777 * 9 8 6 11 11 H 1.09000 * 109.68621 * 256.81108 * 10 9 8 12 12 C 1.50706 * 109.68378 * 136.29654 * 10 9 8 13 13 H 1.08000 * 119.99302 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00436 * 179.72818 * 12 10 9 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47050 * 59.99579 * 16 14 12 18 18 H 1.48496 * 109.47289 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46492 * 299.99554 * 16 14 12 20 20 C 1.53359 * 108.38085 * 16.57825 * 10 9 8 21 21 C 1.53116 * 109.50985 * 310.04652 * 20 10 9 22 22 C 1.50831 * 128.03660 * 179.86831 * 8 6 5 23 23 H 1.09003 * 109.47217 * 300.00489 * 1 2 3 24 24 H 1.09006 * 109.47083 * 59.99459 * 1 2 3 25 25 H 1.08996 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46715 * 240.00259 * 2 1 3 27 27 H 1.09003 * 109.47002 * 59.99823 * 3 2 1 28 28 H 1.08997 * 109.47211 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47239 * 300.00316 * 3 2 1 30 30 H 1.09000 * 109.47389 * 270.02437 * 7 6 5 31 31 H 1.09005 * 109.47319 * 30.02596 * 7 6 5 32 32 H 1.08998 * 109.47448 * 150.02614 * 7 6 5 33 33 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.46714 * 70.06732 * 20 10 9 35 35 H 1.08999 * 109.46528 * 190.04230 * 20 10 9 36 36 H 1.08996 * 109.47248 * 310.26772 * 21 20 10 37 37 H 1.09001 * 109.45873 * 190.27722 * 21 20 10 38 38 H 1.09001 * 109.67807 * 316.35481 * 22 8 6 39 39 H 1.08997 * 109.67856 * 76.87331 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7887 -0.3660 2.4714 6 7 2.4348 -1.2806 3.3166 7 6 2.4201 -1.2612 4.7814 8 6 3.0697 -2.1769 2.5435 9 6 2.8361 -1.8480 1.2473 10 6 3.3779 -2.6172 0.0685 11 1 4.2204 -2.0787 -0.3655 12 6 2.2965 -2.7870 -0.9673 13 1 1.3122 -2.3785 -0.7921 14 6 2.5653 -3.4583 -2.1411 15 7 3.7658 -3.9502 -2.3571 16 14 1.2251 -3.6681 -3.4253 17 1 0.7571 -2.3325 -3.8750 18 1 1.7654 -4.4196 -4.5865 19 1 0.0875 -4.4186 -2.8353 20 6 3.8419 -3.9935 0.5610 21 6 4.7457 -3.8206 1.7848 22 6 3.9054 -3.3542 2.9801 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 3.2553 -0.6628 5.1452 31 1 1.4829 -0.8268 5.1296 32 1 2.5110 -2.2795 5.1592 33 1 3.9551 -4.4223 -3.1831 34 1 2.9736 -4.5938 0.8325 35 1 4.3965 -4.4951 -0.2320 36 1 5.5127 -3.0772 1.5680 37 1 5.2196 -4.7727 2.0236 38 1 4.5627 -3.0551 3.7966 39 1 3.2547 -4.1639 3.3104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082825669.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:34 Heat of formation + Delta-G solvation = 49.204514 kcal Electronic energy + Delta-G solvation = -19083.888236 eV Core-core repulsion = 16413.030556 eV Total energy + Delta-G solvation = -2670.857679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75516 -35.80170 -35.32820 -32.57975 -31.83439 -29.23751 -28.48824 -26.54396 -25.76164 -24.84357 -22.19888 -21.23728 -20.77891 -18.19926 -17.59095 -16.46760 -15.66329 -14.96143 -14.49364 -13.95824 -13.89405 -13.44990 -12.93179 -12.82564 -12.65244 -12.56142 -12.21037 -12.08773 -11.94594 -11.60454 -11.09409 -10.93895 -10.76665 -10.68169 -10.50062 -10.42983 -10.18843 -9.91397 -9.77988 -9.52126 -9.19737 -8.69851 -8.31149 -8.27051 -7.15134 -5.92454 -3.95157 2.62305 3.17553 3.36303 3.40915 3.43995 3.75614 4.50425 4.98710 5.25773 5.36719 5.39246 5.45470 5.58093 5.60824 5.69563 5.72666 5.88359 6.04410 6.16242 6.19805 6.29923 6.37108 6.39574 6.54476 6.56774 6.64892 6.70900 6.76654 6.88842 7.07680 7.19727 7.20462 7.45604 7.71880 7.77421 7.87079 8.05645 8.14175 8.51427 8.64735 9.06886 9.67314 11.14002 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018756 B = 0.010213 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.520940 B = 2740.861950 C = 3825.671744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 C -0.137 4.137 4 C 0.098 3.902 5 N -0.319 5.319 6 N -0.387 5.387 7 C 0.112 3.888 8 C 0.047 3.953 9 C -0.178 4.178 10 C 0.117 3.883 11 H 0.033 0.967 12 C -0.501 4.501 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.884 3.116 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.279 1.279 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.044 4.044 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.259 0.741 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 3.611 9.184 9.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.044 4.044 3 C -0.195 4.195 4 C -0.066 4.066 5 N -0.141 5.141 6 N -0.170 5.170 7 C -0.031 4.031 8 C -0.078 4.078 9 C -0.188 4.188 10 C 0.097 3.903 11 H 0.051 0.949 12 C -0.539 4.539 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.712 3.288 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.143 4.143 21 C -0.154 4.154 22 C -0.083 4.083 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.138 0.862 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.190 4.336 9.989 10.954 hybrid contribution -0.349 -0.793 -0.943 1.280 sum -1.540 3.542 9.046 9.836 Atomic orbital electron populations 1.21737 0.95207 1.01735 1.00646 1.19852 0.95035 0.94550 0.94956 1.21777 1.00906 0.95941 1.00866 1.21876 0.96911 0.95473 0.92389 1.77231 1.21320 1.14637 1.00906 1.47896 1.41248 1.22585 1.05280 1.21559 1.02887 1.02538 0.76100 1.20863 1.00257 0.95058 0.91623 1.20617 1.04598 0.98966 0.94648 1.17284 0.95194 0.89904 0.87882 0.94872 1.21170 0.97334 1.34689 1.00695 0.92010 1.24939 0.95176 0.95727 0.97999 1.69895 1.19854 1.37646 1.25659 0.86777 0.82402 0.78351 0.81254 1.20135 1.21469 1.20434 1.21660 0.97469 1.00385 0.94769 1.21680 0.98348 0.99566 0.95784 1.20211 0.96346 0.93104 0.98642 0.93293 0.92969 0.92596 0.86223 0.93206 0.93012 0.92863 0.91970 0.90254 0.90496 0.93095 0.94184 0.89551 0.92535 0.92917 0.92226 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.08 37.16 0.34 -2.09 16 2 C -0.02 -0.47 2.48 -91.77 -0.23 -0.70 16 3 C -0.14 -2.34 9.18 37.16 0.34 -2.00 16 4 C 0.10 2.14 5.50 -82.52 -0.45 1.68 16 5 N -0.32 -6.65 12.59 33.59 0.42 -6.23 16 6 N -0.39 -7.26 4.00 -63.87 -0.26 -7.51 16 7 C 0.11 1.44 11.32 59.85 0.68 2.12 16 8 C 0.05 0.95 6.73 -82.33 -0.55 0.39 16 9 C -0.18 -4.06 5.41 -105.05 -0.57 -4.63 16 10 C 0.12 2.89 2.34 -92.67 -0.22 2.67 16 11 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 12 C -0.50 -13.22 6.67 -34.44 -0.23 -13.45 16 13 H 0.06 1.63 5.82 -52.49 -0.31 1.33 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 15 N -0.89 -24.70 11.57 55.43 0.64 -24.05 16 16 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.10 -2.41 4.84 -26.49 -0.13 -2.53 16 21 C -0.12 -2.14 5.90 -26.48 -0.16 -2.29 16 22 C -0.04 -0.74 5.83 -27.63 -0.16 -0.90 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 1.07 7.77 -51.93 -0.40 0.66 16 26 H 0.12 2.65 5.63 -51.93 -0.29 2.36 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.04 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.09 2.17 6.54 -51.93 -0.34 1.83 16 36 H 0.06 1.06 8.11 -51.93 -0.42 0.64 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 307.34 15.07 4.63 4.63 Total: -1.00 -29.47 307.34 -7.39 -36.86 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.38 Total: 0.54 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.44 Total: -20.14 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.81 Total: -37.80 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.47 -7.39 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825669.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.069 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds