Wall clock time and date at job start Mon Mar 30 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47044 * 2 1 4 4 C 1.50697 * 109.47102 * 120.00031 * 2 1 3 5 5 N 1.31073 * 125.95935 * 300.00301 * 4 2 1 6 6 N 1.40295 * 108.26585 * 179.97438 * 5 4 2 7 7 C 1.46500 * 126.08864 * 180.02562 * 6 5 4 8 8 C 1.34318 * 107.82037 * 0.05579 * 6 5 4 9 9 C 1.35753 * 107.84663 * 359.91001 * 8 6 5 10 10 C 1.50832 * 124.11361 * 180.10777 * 9 8 6 11 11 H 1.09000 * 109.68621 * 256.81108 * 10 9 8 12 12 C 1.50706 * 109.68378 * 136.29654 * 10 9 8 13 13 H 1.08000 * 119.99302 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00436 * 179.72818 * 12 10 9 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47050 * 59.99579 * 16 14 12 18 18 H 1.48496 * 109.47289 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46492 * 299.99554 * 16 14 12 20 20 C 1.53359 * 108.38085 * 16.57825 * 10 9 8 21 21 C 1.53116 * 109.50985 * 310.04652 * 20 10 9 22 22 C 1.50831 * 128.03660 * 179.86831 * 8 6 5 23 23 H 1.09003 * 109.47217 * 300.00489 * 1 2 3 24 24 H 1.09006 * 109.47083 * 59.99459 * 1 2 3 25 25 H 1.08996 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46715 * 240.00259 * 2 1 3 27 27 H 1.09003 * 109.47002 * 59.99823 * 3 2 1 28 28 H 1.08997 * 109.47211 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47239 * 300.00316 * 3 2 1 30 30 H 1.09000 * 109.47389 * 270.02437 * 7 6 5 31 31 H 1.09005 * 109.47319 * 30.02596 * 7 6 5 32 32 H 1.08998 * 109.47448 * 150.02614 * 7 6 5 33 33 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.46714 * 70.06732 * 20 10 9 35 35 H 1.08999 * 109.46528 * 190.04230 * 20 10 9 36 36 H 1.08996 * 109.47248 * 310.26772 * 21 20 10 37 37 H 1.09001 * 109.45873 * 190.27722 * 21 20 10 38 38 H 1.09001 * 109.67807 * 316.35481 * 22 8 6 39 39 H 1.08997 * 109.67856 * 76.87331 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7887 -0.3660 2.4714 6 7 2.4348 -1.2806 3.3166 7 6 2.4201 -1.2612 4.7814 8 6 3.0697 -2.1769 2.5435 9 6 2.8361 -1.8480 1.2473 10 6 3.3779 -2.6172 0.0685 11 1 4.2204 -2.0787 -0.3655 12 6 2.2965 -2.7870 -0.9673 13 1 1.3122 -2.3785 -0.7921 14 6 2.5653 -3.4583 -2.1411 15 7 3.7658 -3.9502 -2.3571 16 14 1.2251 -3.6681 -3.4253 17 1 0.7571 -2.3325 -3.8750 18 1 1.7654 -4.4196 -4.5865 19 1 0.0875 -4.4186 -2.8353 20 6 3.8419 -3.9935 0.5610 21 6 4.7457 -3.8206 1.7848 22 6 3.9054 -3.3542 2.9801 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 3.2553 -0.6628 5.1452 31 1 1.4829 -0.8268 5.1296 32 1 2.5110 -2.2795 5.1592 33 1 3.9551 -4.4223 -3.1831 34 1 2.9736 -4.5938 0.8325 35 1 4.3965 -4.4951 -0.2320 36 1 5.5127 -3.0772 1.5680 37 1 5.2196 -4.7727 2.0236 38 1 4.5627 -3.0551 3.7966 39 1 3.2547 -4.1639 3.3104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082825669.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:33 Heat of formation + Delta-G solvation = 32.953043 kcal Electronic energy + Delta-G solvation = -19084.592952 eV Core-core repulsion = 16413.030556 eV Total energy + Delta-G solvation = -2671.562396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30106 -37.47935 -36.82591 -34.45621 -33.25891 -30.94407 -30.07799 -27.96243 -27.09723 -26.73593 -23.78060 -22.81627 -22.44739 -19.79211 -19.15988 -18.34270 -17.29015 -16.41166 -16.35060 -15.43442 -15.34912 -14.94144 -14.51812 -14.38798 -14.16623 -14.09684 -13.79106 -13.39322 -13.32640 -13.00424 -12.80271 -12.68982 -12.55204 -12.32640 -12.04775 -11.97336 -11.86153 -11.64114 -11.40748 -11.26479 -10.98373 -10.59675 -10.32873 -9.74433 -8.80613 -7.97385 -6.06284 1.09438 1.45423 1.45529 1.52720 1.84657 2.09230 2.51732 3.28836 3.72421 3.85195 4.06964 4.22980 4.27433 4.32725 4.40658 4.48333 4.65168 4.70290 4.73870 4.80777 4.84565 4.91439 4.97990 4.99556 5.03599 5.08048 5.13549 5.23133 5.38527 5.41726 5.43997 5.62490 5.70845 5.76990 6.06352 6.07463 6.18353 6.42418 6.56111 6.99192 7.05560 7.58205 9.06972 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018756 B = 0.010213 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.520940 B = 2740.861950 C = 3825.671744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.029 4.029 3 C -0.127 4.127 4 C 0.084 3.916 5 N -0.332 5.332 6 N -0.380 5.380 7 C 0.098 3.902 8 C 0.058 3.942 9 C -0.229 4.229 10 C 0.120 3.880 11 H -0.009 1.009 12 C -0.505 4.505 13 H 0.055 0.945 14 C 0.016 3.984 15 N -0.918 5.918 16 Si 0.938 3.062 17 H -0.269 1.269 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.038 4.038 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.258 0.742 34 H 0.026 0.974 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 3.857 11.380 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.049 4.049 3 C -0.185 4.185 4 C -0.080 4.080 5 N -0.155 5.155 6 N -0.163 5.163 7 C -0.042 4.042 8 C -0.070 4.070 9 C -0.240 4.240 10 C 0.101 3.899 11 H 0.009 0.991 12 C -0.543 4.543 13 H 0.074 0.926 14 C -0.182 4.182 15 N -0.558 5.558 16 Si 0.765 3.235 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.077 4.077 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.741 4.602 12.211 13.165 hybrid contribution -0.160 -0.853 -1.531 1.760 sum -1.901 3.749 10.680 11.478 Atomic orbital electron populations 1.21659 0.93796 1.00862 1.02108 1.19822 0.96226 0.95632 0.93209 1.21691 1.00151 0.94383 1.02271 1.22083 0.97095 0.95533 0.93298 1.77147 1.22127 1.15585 1.00655 1.48340 1.39570 1.21178 1.07203 1.22066 1.04520 1.05119 0.72492 1.21282 0.99270 0.95459 0.91018 1.20573 1.07436 1.00631 0.95329 1.17053 0.93403 0.90766 0.88681 0.99088 1.21412 0.97511 1.33929 1.01461 0.92647 1.25599 0.96994 0.95789 0.99795 1.70027 1.21326 1.38496 1.25998 0.85906 0.80050 0.78468 0.79086 1.19367 1.21220 1.20264 1.21444 0.97370 0.98608 0.96131 1.21577 0.97550 1.01045 0.94511 1.20317 0.96498 0.92217 0.98643 0.92453 0.90773 0.94572 0.89450 0.92522 0.94104 0.90602 0.89772 0.89134 0.87543 0.93304 0.95534 0.92547 0.93264 0.89972 0.88110 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.08 71.98 0.65 -3.84 16 2 C -0.03 -1.15 2.48 -11.54 -0.03 -1.18 16 3 C -0.13 -4.29 9.18 71.98 0.66 -3.63 16 4 C 0.08 3.67 5.50 42.93 0.24 3.91 16 5 N -0.33 -13.48 12.59 -47.63 -0.60 -14.08 16 6 N -0.38 -13.31 4.00 -356.00 -1.42 -14.73 16 7 C 0.10 2.12 11.32 127.77 1.45 3.56 16 8 C 0.06 2.21 6.73 41.64 0.28 2.49 16 9 C -0.23 -10.61 5.41 -20.14 -0.11 -10.72 16 10 C 0.12 6.23 2.34 -12.12 -0.03 6.21 16 11 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 12 C -0.50 -27.81 6.67 25.60 0.17 -27.64 16 13 H 0.06 3.05 5.82 -2.91 -0.02 3.04 16 14 C 0.02 0.90 5.31 84.65 0.45 1.35 16 15 N -0.92 -52.93 11.57 21.45 0.25 -52.68 16 16 Si 0.94 43.92 29.54 68.60 2.03 45.94 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 C -0.10 -4.58 4.84 30.75 0.15 -4.43 16 21 C -0.11 -3.87 5.90 30.76 0.18 -3.69 16 22 C -0.04 -1.15 5.83 30.01 0.17 -0.97 16 23 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 25 H 0.04 1.39 7.77 -2.39 -0.02 1.37 16 26 H 0.09 4.06 5.63 -2.39 -0.01 4.05 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.11 1.71 7.90 -2.39 -0.02 1.69 16 33 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 35 H 0.06 2.96 6.54 -2.39 -0.02 2.94 16 36 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 38 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -66.75 307.34 5.50 -61.25 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.01 Total: 12.87 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 4.24 Total: -38.58 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.78 Total: -81.49 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.75 5.50 -61.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825669.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.205 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds