Wall clock time and date at job start Mon Mar 30 2020 06:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47143 * 2 1 4 4 H 1.09007 * 109.46870 * 54.99289 * 3 2 1 5 5 N 1.46898 * 109.46791 * 294.99757 * 3 2 1 6 6 C 1.50696 * 109.47145 * 174.99551 * 3 2 1 7 7 C 1.40887 * 126.29231 * 80.02632 * 6 3 2 8 8 C 1.34845 * 107.41937 * 179.97438 * 7 6 3 9 9 N 1.36337 * 108.21771 * 359.97438 * 8 7 6 10 10 C 1.46508 * 125.63532 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.46761 * 85.73130 * 10 9 8 12 12 C 1.50698 * 115.55104 * 278.95542 * 11 10 9 13 13 H 1.08001 * 119.99871 * 144.55120 * 12 11 10 14 14 C 1.37878 * 119.99861 * 324.54247 * 12 11 10 15 15 N 1.31507 * 120.00405 * 336.66681 * 14 12 11 16 16 Si 1.86808 * 119.99676 * 156.66484 * 14 12 11 17 17 H 1.48495 * 109.47250 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46693 * 120.00291 * 16 14 12 19 19 H 1.48497 * 109.47151 * 240.00060 * 16 14 12 20 20 C 1.53002 * 117.49879 * 133.24729 * 11 10 9 21 21 C 1.52995 * 60.00026 * 252.50928 * 20 11 10 22 22 C 1.34855 * 126.29136 * 259.70842 * 6 3 2 23 23 H 1.09000 * 109.46840 * 60.00612 * 1 2 3 24 24 H 1.08998 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.08988 * 109.47478 * 300.00543 * 1 2 3 26 26 H 1.09000 * 109.46840 * 119.99388 * 2 1 3 27 27 H 1.08997 * 109.47598 * 239.99250 * 2 1 3 28 28 H 1.00904 * 110.99795 * 176.04510 * 5 3 2 29 29 H 1.00904 * 111.00306 * 299.99614 * 5 3 2 30 30 H 1.08005 * 126.29380 * 359.97438 * 7 6 3 31 31 H 1.08002 * 125.88982 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47258 * 205.73059 * 10 9 8 33 33 H 1.08997 * 109.47209 * 325.73381 * 10 9 8 34 34 H 0.97001 * 120.00419 * 184.71649 * 15 14 12 35 35 H 1.09002 * 117.49891 * 0.02562 * 20 11 10 36 36 H 1.09003 * 117.50061 * 145.02166 * 20 11 10 37 37 H 1.09003 * 117.49722 * 252.51011 * 21 20 11 38 38 H 1.09003 * 117.52114 * 107.48006 * 21 20 11 39 39 H 1.07996 * 125.89003 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6514 2.0992 -1.2553 6 6 3.5419 1.4443 0.1239 7 6 4.4647 1.2162 -0.9159 8 6 5.7011 1.3063 -0.3853 9 7 5.5755 1.5823 0.9439 10 6 6.6823 1.7589 1.8874 11 6 7.1604 3.2117 1.8462 12 6 8.0930 3.5572 0.7140 13 1 8.0404 4.5305 0.2490 14 6 9.0134 2.6307 0.2719 15 7 9.4095 1.6642 1.0709 16 14 9.6979 2.7483 -1.4623 17 1 9.0967 3.9170 -2.1535 18 1 11.1725 2.9140 -1.4022 19 1 9.3692 1.5078 -2.2094 20 6 7.3790 3.9217 3.1838 21 6 6.1800 4.2915 2.3084 22 6 4.2497 1.6705 1.2493 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8898 26 1 1.8933 -0.5137 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.9204 3.0717 -1.2529 29 1 2.0423 1.6179 -2.0513 30 1 4.2258 1.0075 -1.9483 31 1 6.6306 1.1822 -0.9211 32 1 6.3434 1.5164 2.8946 33 1 7.5039 1.0981 1.6114 34 1 10.1067 1.0534 0.7849 35 1 7.1826 3.3536 4.0931 36 1 8.1976 4.6388 3.2451 37 1 6.2098 5.2519 1.7938 38 1 5.1941 3.9670 2.6414 39 1 3.8373 1.8827 2.2246 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085839843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:08 Heat of formation + Delta-G solvation = 60.532710 kcal Electronic energy + Delta-G solvation = -18359.692737 eV Core-core repulsion = 15689.326285 eV Total energy + Delta-G solvation = -2670.366452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51434 -36.94261 -35.86976 -32.42202 -31.33836 -30.48787 -28.33446 -26.26501 -25.40613 -24.09087 -21.31056 -21.07020 -19.84236 -19.15614 -18.53348 -16.77975 -15.85280 -15.68391 -14.82209 -14.41288 -14.18451 -13.89277 -13.34212 -13.15117 -12.93472 -12.60742 -12.25447 -12.11384 -11.87293 -11.48444 -11.32774 -11.06366 -11.02000 -10.78447 -10.74052 -10.56598 -10.47087 -10.37997 -9.67524 -9.36456 -8.91849 -8.54384 -8.23431 -7.64722 -7.32595 -6.33327 -4.24187 3.11020 3.12603 3.24653 3.30799 3.61211 3.92211 4.21610 4.76551 4.96342 5.24062 5.37105 5.41902 5.55652 5.71516 5.76946 5.81645 5.93136 6.01336 6.10635 6.16025 6.21180 6.22134 6.27039 6.44300 6.49487 6.54014 6.56320 6.78002 6.85917 6.89629 6.99537 7.19877 7.21211 7.48327 7.71416 7.73127 7.75312 8.08019 8.24476 8.29752 8.67606 9.30106 10.71402 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025901 B = 0.006441 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.785775 B = 4345.976629 C = 4887.594017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.169 3.831 4 H 0.072 0.928 5 N -0.838 5.838 6 C -0.219 4.219 7 C -0.224 4.224 8 C 0.024 3.976 9 N -0.410 5.410 10 C 0.124 3.876 11 C 0.036 3.964 12 C -0.487 4.487 13 H 0.063 0.937 14 C 0.074 3.926 15 N -0.873 5.873 16 Si 0.881 3.119 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.278 1.278 20 C -0.195 4.195 21 C -0.200 4.200 22 C -0.014 4.014 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.339 0.661 29 H 0.336 0.664 30 H 0.119 0.881 31 H 0.150 0.850 32 H 0.055 0.945 33 H 0.132 0.868 34 H 0.266 0.734 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 -2.564 -0.941 10.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C 0.057 3.943 4 H 0.090 0.910 5 N -0.365 5.365 6 C -0.228 4.228 7 C -0.248 4.248 8 C -0.109 4.109 9 N -0.080 5.080 10 C 0.003 3.997 11 C 0.035 3.965 12 C -0.524 4.524 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.510 5.510 16 Si 0.708 3.292 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.203 1.203 20 C -0.234 4.234 21 C -0.238 4.238 22 C -0.147 4.147 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.167 0.833 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.472 -2.908 -0.482 10.879 hybrid contribution 1.688 0.350 -0.852 1.922 sum -8.784 -2.558 -1.334 9.246 Atomic orbital electron populations 1.21694 0.96011 1.00272 1.02114 1.21492 0.95341 0.96009 1.01683 1.19647 0.88022 0.94317 0.92329 0.90982 1.59160 1.66166 1.06914 1.04259 1.20131 0.95630 1.13026 0.93985 1.20390 0.92068 1.14194 0.98154 1.21669 0.98650 1.06450 0.84143 1.44299 1.05689 1.49554 1.08430 1.21875 0.87929 1.00335 0.89540 1.19215 0.95857 0.87925 0.93459 1.20469 1.17052 1.00053 1.14814 0.91869 1.24928 0.95590 0.95166 0.97249 1.69877 1.27555 1.18751 1.34786 0.86698 0.78634 0.78671 0.85207 1.19343 1.20922 1.20323 1.23013 0.99191 1.05631 0.95525 1.22807 0.93161 1.01359 1.06467 1.21442 0.83311 1.10901 0.99048 0.91797 0.93944 0.93458 0.92177 0.92389 0.84946 0.85217 0.86313 0.83265 0.92689 0.85071 0.92396 0.91660 0.90063 0.90584 0.91414 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.80 37.16 0.36 -1.26 16 2 C -0.11 -1.39 5.56 -26.73 -0.15 -1.54 16 3 C 0.17 2.39 3.20 -68.87 -0.22 2.17 16 4 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 5 N -0.84 -10.89 8.60 -5.65 -0.05 -10.94 16 6 C -0.22 -3.73 5.11 -104.82 -0.54 -4.27 16 7 C -0.22 -4.07 10.24 -39.78 -0.41 -4.48 16 8 C 0.02 0.50 11.44 -16.75 -0.19 0.31 16 9 N -0.41 -8.43 2.70 -117.13 -0.32 -8.75 16 10 C 0.12 2.73 5.76 -4.04 -0.02 2.70 16 11 C 0.04 0.85 1.94 -155.66 -0.30 0.55 16 12 C -0.49 -12.62 8.97 -34.44 -0.31 -12.93 16 13 H 0.06 1.69 7.92 -52.49 -0.42 1.28 16 14 C 0.07 1.88 5.00 -17.82 -0.09 1.79 16 15 N -0.87 -22.61 11.21 55.43 0.62 -21.99 16 16 Si 0.88 19.87 29.60 -169.99 -5.03 14.84 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 C -0.20 -4.24 9.88 -26.73 -0.26 -4.50 16 21 C -0.20 -4.26 9.90 -26.73 -0.26 -4.52 16 22 C -0.01 -0.25 11.11 -16.75 -0.19 -0.44 16 23 H 0.06 0.75 7.75 -51.93 -0.40 0.34 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.52 8.14 -51.94 -0.42 0.09 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.34 4.40 9.06 -39.29 -0.36 4.04 16 29 H 0.34 4.24 8.25 -39.29 -0.32 3.92 16 30 H 0.12 1.93 7.73 -52.48 -0.41 1.53 16 31 H 0.15 3.20 8.06 -52.49 -0.42 2.77 16 32 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 33 H 0.13 3.19 5.45 -51.93 -0.28 2.90 16 34 H 0.27 6.57 8.32 -40.82 -0.34 6.23 16 35 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 36 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 39 H 0.14 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 322.83 15.07 4.87 4.87 Total: -1.00 -25.51 322.83 -8.86 -34.37 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -6.37 Total: 14.02 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -2.58 Total: -26.41 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.26 Total: -41.68 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -25.51 -8.86 -34.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085839843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.900 kcal (2) G-P(sol) polarization free energy of solvation -25.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds