Wall clock time and date at job start Mon Mar 30 2020 06:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47143 * 2 1 4 4 H 1.09007 * 109.46870 * 54.99289 * 3 2 1 5 5 N 1.46898 * 109.46791 * 294.99757 * 3 2 1 6 6 C 1.50696 * 109.47145 * 174.99551 * 3 2 1 7 7 C 1.40887 * 126.29231 * 80.02632 * 6 3 2 8 8 C 1.34845 * 107.41937 * 179.97438 * 7 6 3 9 9 N 1.36337 * 108.21771 * 359.97438 * 8 7 6 10 10 C 1.46508 * 125.63532 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.46761 * 85.73130 * 10 9 8 12 12 C 1.50698 * 115.55104 * 278.95542 * 11 10 9 13 13 H 1.08001 * 119.99871 * 144.55120 * 12 11 10 14 14 C 1.37878 * 119.99861 * 324.54247 * 12 11 10 15 15 N 1.31507 * 120.00405 * 336.66681 * 14 12 11 16 16 Si 1.86808 * 119.99676 * 156.66484 * 14 12 11 17 17 H 1.48495 * 109.47250 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46693 * 120.00291 * 16 14 12 19 19 H 1.48497 * 109.47151 * 240.00060 * 16 14 12 20 20 C 1.53002 * 117.49879 * 133.24729 * 11 10 9 21 21 C 1.52995 * 60.00026 * 252.50928 * 20 11 10 22 22 C 1.34855 * 126.29136 * 259.70842 * 6 3 2 23 23 H 1.09000 * 109.46840 * 60.00612 * 1 2 3 24 24 H 1.08998 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.08988 * 109.47478 * 300.00543 * 1 2 3 26 26 H 1.09000 * 109.46840 * 119.99388 * 2 1 3 27 27 H 1.08997 * 109.47598 * 239.99250 * 2 1 3 28 28 H 1.00904 * 110.99795 * 176.04510 * 5 3 2 29 29 H 1.00904 * 111.00306 * 299.99614 * 5 3 2 30 30 H 1.08005 * 126.29380 * 359.97438 * 7 6 3 31 31 H 1.08002 * 125.88982 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47258 * 205.73059 * 10 9 8 33 33 H 1.08997 * 109.47209 * 325.73381 * 10 9 8 34 34 H 0.97001 * 120.00419 * 184.71649 * 15 14 12 35 35 H 1.09002 * 117.49891 * 0.02562 * 20 11 10 36 36 H 1.09003 * 117.50061 * 145.02166 * 20 11 10 37 37 H 1.09003 * 117.49722 * 252.51011 * 21 20 11 38 38 H 1.09003 * 117.52114 * 107.48006 * 21 20 11 39 39 H 1.07996 * 125.89003 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6514 2.0992 -1.2553 6 6 3.5419 1.4443 0.1239 7 6 4.4647 1.2162 -0.9159 8 6 5.7011 1.3063 -0.3853 9 7 5.5755 1.5823 0.9439 10 6 6.6823 1.7589 1.8874 11 6 7.1604 3.2117 1.8462 12 6 8.0930 3.5572 0.7140 13 1 8.0404 4.5305 0.2490 14 6 9.0134 2.6307 0.2719 15 7 9.4095 1.6642 1.0709 16 14 9.6979 2.7483 -1.4623 17 1 9.0967 3.9170 -2.1535 18 1 11.1725 2.9140 -1.4022 19 1 9.3692 1.5078 -2.2094 20 6 7.3790 3.9217 3.1838 21 6 6.1800 4.2915 2.3084 22 6 4.2497 1.6705 1.2493 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8898 26 1 1.8933 -0.5137 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.9204 3.0717 -1.2529 29 1 2.0423 1.6179 -2.0513 30 1 4.2258 1.0075 -1.9483 31 1 6.6306 1.1822 -0.9211 32 1 6.3434 1.5164 2.8946 33 1 7.5039 1.0981 1.6114 34 1 10.1067 1.0534 0.7849 35 1 7.1826 3.3536 4.0931 36 1 8.1976 4.6388 3.2451 37 1 6.2098 5.2519 1.7938 38 1 5.1941 3.9670 2.6414 39 1 3.8373 1.8827 2.2246 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085839843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:08 Heat of formation + Delta-G solvation = 48.510314 kcal Electronic energy + Delta-G solvation = -18360.214067 eV Core-core repulsion = 15689.326285 eV Total energy + Delta-G solvation = -2670.887782 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.99441 -38.57863 -37.10953 -34.35772 -32.67766 -31.65475 -29.75175 -27.99495 -27.08965 -25.32551 -23.02969 -22.20903 -21.50976 -20.75722 -19.91668 -18.54251 -17.45054 -16.76279 -16.71418 -15.96591 -15.52008 -15.31359 -14.81357 -14.70064 -14.16996 -13.89841 -13.70646 -13.59349 -13.43044 -13.12189 -12.89522 -12.62300 -12.52991 -12.29534 -12.20905 -12.14898 -11.79113 -11.56294 -11.39413 -11.20411 -10.71856 -10.13330 -9.63414 -9.13291 -8.77782 -8.27634 -6.23126 1.30313 1.38595 1.47771 1.61551 2.18502 2.33109 2.36940 2.86503 3.58935 3.89485 4.05701 4.19052 4.23231 4.35474 4.37025 4.47565 4.49320 4.55144 4.70704 4.75704 4.85995 4.86968 4.96091 5.06412 5.14902 5.16479 5.26023 5.32631 5.38613 5.44774 5.47649 5.62042 5.66174 5.78108 6.27485 6.31967 6.37712 6.60535 6.70362 6.71920 6.77329 7.32787 8.76427 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025901 B = 0.006441 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.785775 B = 4345.976629 C = 4887.594017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.174 3.826 4 H 0.077 0.923 5 N -0.832 5.832 6 C -0.210 4.210 7 C -0.214 4.214 8 C -0.011 4.011 9 N -0.419 5.419 10 C 0.133 3.867 11 C 0.010 3.990 12 C -0.508 4.508 13 H 0.043 0.957 14 C 0.046 3.954 15 N -0.891 5.891 16 Si 0.929 3.071 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.272 1.272 20 C -0.191 4.191 21 C -0.183 4.183 22 C -0.024 4.024 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.340 0.660 29 H 0.339 0.661 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.268 0.732 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.895 -2.795 -0.949 12.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C 0.061 3.939 4 H 0.095 0.905 5 N -0.359 5.359 6 C -0.219 4.219 7 C -0.239 4.239 8 C -0.144 4.144 9 N -0.090 5.090 10 C 0.012 3.988 11 C 0.009 3.991 12 C -0.545 4.545 13 H 0.061 0.939 14 C -0.156 4.156 15 N -0.528 5.528 16 Si 0.755 3.245 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.197 1.197 20 C -0.229 4.229 21 C -0.220 4.220 22 C -0.156 4.156 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.275 -3.138 -0.498 12.680 hybrid contribution 2.213 0.438 -0.857 2.413 sum -10.063 -2.701 -1.356 10.507 Atomic orbital electron populations 1.21631 0.94569 1.01098 1.02161 1.21451 0.96526 0.94940 1.01306 1.19695 0.85868 0.95316 0.93009 0.90484 1.59155 1.65821 1.06971 1.03919 1.20498 0.97099 1.11318 0.92969 1.20641 0.91366 1.12597 0.99249 1.21671 0.98974 1.09013 0.84738 1.44239 1.06107 1.50519 1.08104 1.21573 0.87941 0.98791 0.90476 1.19294 0.96833 0.89341 0.93626 1.20575 1.18129 0.99560 1.16192 0.93852 1.25371 0.95830 0.94959 0.99458 1.69941 1.27912 1.19157 1.35748 0.85957 0.78017 0.78436 0.82072 1.19924 1.20630 1.19730 1.23000 0.99157 1.05133 0.95633 1.22769 0.93712 1.00211 1.05347 1.21913 0.82450 1.10779 1.00471 0.92112 0.92799 0.92995 0.92513 0.92854 0.84796 0.84844 0.84533 0.85155 0.91184 0.87662 0.92259 0.89709 0.91154 0.91241 0.89454 0.81816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.80 71.98 0.71 -2.01 16 2 C -0.10 -2.43 5.56 30.60 0.17 -2.26 16 3 C 0.17 4.44 3.20 44.17 0.14 4.58 16 4 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 5 N -0.83 -19.46 8.60 -171.80 -1.48 -20.94 16 6 C -0.21 -6.73 5.11 -19.99 -0.10 -6.84 16 7 C -0.21 -7.51 10.24 22.14 0.23 -7.28 16 8 C -0.01 -0.47 11.44 83.21 0.95 0.48 16 9 N -0.42 -17.00 2.70 -524.49 -1.42 -18.41 16 10 C 0.13 5.86 5.76 86.38 0.50 6.35 16 11 C 0.01 0.47 1.94 -52.93 -0.10 0.37 16 12 C -0.51 -26.74 8.97 25.60 0.23 -26.51 16 13 H 0.04 2.39 7.92 -2.91 -0.02 2.36 16 14 C 0.05 2.36 5.00 84.66 0.42 2.78 16 15 N -0.89 -46.75 11.21 21.45 0.24 -46.51 16 16 Si 0.93 41.37 29.60 68.60 2.03 43.40 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 C -0.19 -8.12 9.88 30.59 0.30 -7.82 16 21 C -0.18 -7.55 9.90 30.59 0.30 -7.25 16 22 C -0.02 -0.84 11.11 83.22 0.92 0.09 16 23 H 0.06 1.25 7.75 -2.39 -0.02 1.23 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.34 7.99 9.06 -89.69 -0.81 7.18 16 29 H 0.34 7.70 8.25 -89.69 -0.74 6.96 16 30 H 0.14 4.20 7.73 -2.91 -0.02 4.17 16 31 H 0.13 5.77 8.06 -2.91 -0.02 5.74 16 32 H 0.07 2.78 7.92 -2.39 -0.02 2.76 16 33 H 0.11 5.20 5.45 -2.39 -0.01 5.19 16 34 H 0.27 13.38 8.32 -92.71 -0.77 12.61 16 35 H 0.08 3.24 8.08 -2.39 -0.02 3.22 16 36 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.09 3.24 7.91 -2.39 -0.02 3.22 16 39 H 0.16 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -53.59 322.83 3.53 -50.06 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.52 Total: 37.72 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 4.67 Total: -45.31 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -2.65 Total: -85.86 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -53.59 3.53 -50.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085839843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.569 kcal (2) G-P(sol) polarization free energy of solvation -53.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds