Wall clock time and date at job start Mon Mar 30 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 H 1.08997 * 109.47635 * 304.99933 * 3 2 1 5 5 N 1.46901 * 109.47196 * 65.00476 * 3 2 1 6 6 C 1.50700 * 109.47061 * 184.99866 * 3 2 1 7 7 C 1.40895 * 126.29152 * 279.97680 * 6 3 2 8 8 C 1.34858 * 107.41739 * 179.97438 * 7 6 3 9 9 N 1.36340 * 108.21865 * 0.02562 * 8 7 6 10 10 C 1.46494 * 125.63936 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47265 * 95.84425 * 10 9 8 12 12 C 1.50697 * 115.56217 * 320.17737 * 11 10 9 13 13 H 1.08001 * 119.99978 * 96.45287 * 12 11 10 14 14 C 1.37882 * 120.00197 * 276.45615 * 12 11 10 15 15 N 1.31516 * 119.99577 * 8.59917 * 14 12 11 16 16 Si 1.86799 * 119.99933 * 188.59878 * 14 12 11 17 17 H 1.48495 * 109.46983 * 89.99983 * 16 14 12 18 18 H 1.48499 * 109.46707 * 209.99791 * 16 14 12 19 19 H 1.48492 * 109.47273 * 330.00038 * 16 14 12 20 20 C 1.53003 * 117.49752 * 174.48647 * 11 10 9 21 21 C 1.52998 * 60.03128 * 252.52708 * 20 11 10 22 22 C 1.34851 * 126.29377 * 100.28561 * 6 3 2 23 23 H 1.09000 * 109.46951 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47267 * 299.99707 * 1 2 3 25 25 H 1.09002 * 109.46946 * 59.99977 * 1 2 3 26 26 H 1.09000 * 109.47469 * 239.99836 * 2 1 3 27 27 H 1.09002 * 109.46946 * 120.00023 * 2 1 3 28 28 H 1.00905 * 110.99108 * 296.04372 * 5 3 2 29 29 H 1.00894 * 111.00091 * 59.99276 * 5 3 2 30 30 H 1.07996 * 126.29134 * 0.02562 * 7 6 3 31 31 H 1.07996 * 125.88977 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.46797 * 335.84705 * 10 9 8 33 33 H 1.09004 * 109.47387 * 215.84955 * 10 9 8 34 34 H 0.96999 * 119.99528 * 174.99017 * 15 14 12 35 35 H 1.09006 * 117.49636 * 145.02037 * 20 11 10 36 36 H 1.08997 * 117.50226 * 0.02853 * 20 11 10 37 37 H 1.08993 * 117.49913 * 107.48102 * 21 20 11 38 38 H 1.09007 * 117.49388 * 252.47817 * 21 20 11 39 39 H 1.08001 * 125.88835 * 359.97438 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6515 2.0992 1.2553 6 6 3.5419 1.4442 -0.1238 7 6 4.4647 1.2161 0.9162 8 6 5.7012 1.3051 0.3854 9 7 5.5756 1.5803 -0.9440 10 6 6.6824 1.7557 -1.8876 11 6 6.9480 0.4353 -2.6134 12 6 6.8541 -0.8048 -1.7623 13 1 5.9395 -1.3789 -1.7435 14 6 7.9358 -1.2065 -1.0074 15 7 8.9865 -0.4234 -0.8954 16 14 7.9088 -2.8627 -0.1439 17 1 8.4686 -3.9006 -1.0464 18 1 8.7266 -2.7891 1.0934 19 1 6.5097 -3.2149 0.2076 20 6 7.9855 0.4435 -3.7379 21 6 6.4969 0.3276 -4.0722 22 6 4.2498 1.6702 -1.2491 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.6477 2.1683 1.3315 29 1 2.0422 1.6178 2.0512 30 1 4.2256 1.0074 1.9485 31 1 6.6306 1.1806 0.9212 32 1 7.5779 2.0586 -1.3450 33 1 6.4212 2.5242 -2.6153 34 1 9.7163 -0.6724 -0.3070 35 1 8.6001 -0.4481 -3.8621 36 1 8.4791 1.3894 -3.9604 37 1 6.0112 1.1975 -4.5142 38 1 6.1324 -0.6402 -4.4167 39 1 3.8375 1.8824 -2.2245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085839847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:10 Heat of formation + Delta-G solvation = 47.919151 kcal Electronic energy + Delta-G solvation = -18425.553501 eV Core-core repulsion = 15754.640084 eV Total energy + Delta-G solvation = -2670.913417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81881 -38.50083 -37.32918 -34.04102 -32.73483 -31.44297 -29.71098 -27.89488 -27.15170 -25.35884 -22.96878 -22.24245 -21.45699 -20.69751 -19.86725 -18.42808 -17.40167 -16.66941 -16.36203 -15.88720 -15.49834 -15.19461 -15.03524 -14.73237 -14.20326 -14.03654 -13.66269 -13.50546 -13.29166 -13.07929 -12.96109 -12.81797 -12.47046 -12.40789 -12.31150 -12.02841 -11.78496 -11.64257 -11.52083 -10.86587 -10.52019 -10.01894 -9.48984 -8.98385 -8.62061 -8.14309 -6.20771 1.33375 1.37503 1.45249 1.75096 2.33707 2.38891 2.53798 3.15545 3.43338 3.97308 4.12094 4.23543 4.27186 4.29159 4.32325 4.45342 4.53815 4.57886 4.65861 4.73565 4.83655 4.89589 4.94674 4.97423 5.06719 5.18542 5.19791 5.25431 5.43005 5.49518 5.59222 5.59743 5.74697 5.81558 6.35441 6.38821 6.48315 6.72541 6.80521 6.82928 6.92396 7.45955 8.93450 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.007181 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.219405 B = 3898.368320 C = 4363.358159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.149 4.149 3 C 0.178 3.822 4 H 0.080 0.920 5 N -0.841 5.841 6 C -0.172 4.172 7 C -0.214 4.214 8 C -0.002 4.002 9 N -0.410 5.410 10 C 0.152 3.848 11 C 0.001 3.999 12 C -0.485 4.485 13 H 0.035 0.965 14 C 0.042 3.958 15 N -0.901 5.901 16 Si 0.931 3.069 17 H -0.279 1.279 18 H -0.282 1.282 19 H -0.278 1.278 20 C -0.156 4.156 21 C -0.186 4.186 22 C -0.024 4.024 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.346 0.654 29 H 0.340 0.660 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.874 3.898 0.710 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.066 3.934 4 H 0.098 0.902 5 N -0.371 5.371 6 C -0.179 4.179 7 C -0.239 4.239 8 C -0.135 4.135 9 N -0.080 5.080 10 C 0.030 3.970 11 C 0.000 4.000 12 C -0.523 4.523 13 H 0.053 0.947 14 C -0.159 4.159 15 N -0.539 5.539 16 Si 0.758 3.242 17 H -0.205 1.205 18 H -0.208 1.208 19 H -0.204 1.204 20 C -0.194 4.194 21 C -0.223 4.223 22 C -0.156 4.156 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.160 0.840 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.971 4.577 0.213 11.889 hybrid contribution 0.309 -2.191 0.759 2.339 sum -10.662 2.386 0.972 10.969 Atomic orbital electron populations 1.21768 0.94066 1.02109 1.02424 1.22256 0.96934 0.98206 1.01467 1.19496 0.89012 0.91744 0.93116 0.90169 1.58828 1.16056 1.58415 1.03790 1.19336 0.94880 1.10666 0.93035 1.20546 0.91607 1.12639 0.99096 1.21577 0.98812 1.08502 0.84582 1.43813 1.05848 1.50986 1.07403 1.21332 0.87484 0.96994 0.91235 1.19276 1.00205 0.93563 0.86933 1.20293 0.97309 1.07907 1.26778 0.94694 1.25353 0.95047 0.98771 0.96742 1.70014 1.08369 1.37701 1.37828 0.85983 0.77695 0.82176 0.78359 1.20515 1.20800 1.20363 1.22468 0.91154 1.00345 1.05473 1.23081 0.97273 1.01346 1.00633 1.21679 0.82584 1.11476 0.99889 0.92506 0.91705 0.91968 0.93293 0.93241 0.83957 0.84711 0.85189 0.84955 0.91446 0.89984 0.93087 0.92330 0.89897 0.88498 0.90955 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.68 71.98 0.70 -2.05 16 2 C -0.15 -3.84 5.56 30.59 0.17 -3.67 16 3 C 0.18 4.90 3.26 44.17 0.14 5.05 16 4 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 5 N -0.84 -20.17 9.09 -171.81 -1.56 -21.74 16 6 C -0.17 -6.11 5.12 -19.99 -0.10 -6.21 16 7 C -0.21 -8.26 10.24 22.14 0.23 -8.03 16 8 C 0.00 -0.09 10.89 83.22 0.91 0.82 16 9 N -0.41 -17.15 2.23 -524.47 -1.17 -18.32 16 10 C 0.15 6.37 6.17 86.38 0.53 6.90 16 11 C 0.00 0.05 1.72 -52.90 -0.09 -0.04 16 12 C -0.48 -25.71 7.71 25.60 0.20 -25.52 16 13 H 0.03 1.98 7.83 -2.91 -0.02 1.95 16 14 C 0.04 2.23 5.39 84.66 0.46 2.69 16 15 N -0.90 -49.17 13.06 21.45 0.28 -48.89 16 16 Si 0.93 43.71 29.55 68.60 2.03 45.73 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 C -0.16 -6.79 9.61 30.59 0.29 -6.50 16 21 C -0.19 -7.41 9.88 30.62 0.30 -7.11 16 22 C -0.02 -0.92 11.35 83.21 0.94 0.03 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.02 6.87 -2.39 -0.02 1.00 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.35 6.43 7.55 -89.69 -0.68 5.75 16 29 H 0.34 8.09 8.25 -89.70 -0.74 7.35 16 30 H 0.13 4.50 7.72 -2.91 -0.02 4.48 16 31 H 0.13 5.99 8.06 -2.91 -0.02 5.96 16 32 H 0.07 3.07 8.12 -2.39 -0.02 3.05 16 33 H 0.08 2.93 7.95 -2.38 -0.02 2.91 16 34 H 0.26 13.74 8.32 -92.71 -0.77 12.97 16 35 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 36 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.10 3.24 8.08 -2.39 -0.02 3.22 16 38 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 39 H 0.16 5.29 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -57.96 323.79 3.86 -54.10 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -0.39 Total: 32.76 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 4.68 Total: -43.65 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -2.45 Total: -88.94 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -57.96 3.86 -54.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085839847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.017 kcal (2) G-P(sol) polarization free energy of solvation -57.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds