Wall clock time and date at job start Mon Mar 30 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47161 * 2 1 4 4 C 1.39879 * 126.04004 * 270.00009 * 3 2 1 5 5 C 1.50699 * 125.89480 * 359.97438 * 4 3 2 6 6 N 1.30833 * 108.20388 * 179.74176 * 4 3 2 7 7 N 1.40081 * 108.20372 * 0.40121 * 6 4 3 8 8 C 1.46500 * 126.03540 * 179.85661 * 7 6 4 9 9 C 1.53002 * 109.47252 * 275.75639 * 8 7 6 10 10 C 1.50699 * 115.55184 * 302.43686 * 9 8 7 11 11 H 1.07995 * 120.00091 * 94.86695 * 10 9 8 12 12 C 1.37884 * 119.99955 * 274.87023 * 10 9 8 13 13 N 1.31507 * 119.99653 * 174.84842 * 12 10 9 14 14 Si 1.86791 * 119.99781 * 354.84607 * 12 10 9 15 15 H 1.48505 * 109.47278 * 275.32882 * 14 12 10 16 16 H 1.48498 * 109.47640 * 35.33334 * 14 12 10 17 17 H 1.48504 * 109.47000 * 155.33064 * 14 12 10 18 18 C 1.52999 * 117.51649 * 88.13346 * 9 8 7 19 19 C 1.52999 * 60.00048 * 107.48128 * 18 9 8 20 20 C 1.34946 * 107.92640 * 359.59205 * 7 6 4 21 21 C 1.50705 * 126.12499 * 180.26200 * 20 7 6 22 22 H 1.08998 * 109.46707 * 59.99998 * 1 2 3 23 23 H 1.08996 * 109.47001 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47067 * 300.00502 * 1 2 3 25 25 H 1.08997 * 109.47407 * 239.99721 * 2 1 3 26 26 H 1.08995 * 109.47344 * 119.99621 * 2 1 3 27 27 H 1.09001 * 109.46894 * 90.00335 * 5 4 3 28 28 H 1.08995 * 109.47205 * 209.99839 * 5 4 3 29 29 H 1.09002 * 109.47455 * 330.00491 * 5 4 3 30 30 H 1.09006 * 109.47076 * 155.75957 * 8 7 6 31 31 H 1.08998 * 109.47352 * 35.76098 * 8 7 6 32 32 H 0.97009 * 119.99739 * 180.02562 * 13 12 10 33 33 H 1.08998 * 117.49863 * 214.97419 * 18 9 8 34 34 H 1.09005 * 117.49734 * 359.97438 * 18 9 8 35 35 H 1.09003 * 117.50610 * 252.51113 * 19 18 9 36 36 H 1.09009 * 117.49643 * 107.48740 * 19 18 9 37 37 H 1.09001 * 109.47348 * 90.00291 * 21 20 7 38 38 H 1.09004 * 109.46777 * 210.00498 * 21 20 7 39 39 H 1.09006 * 109.47228 * 329.99575 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3067 2.1967 -1.1311 5 6 2.1514 1.7560 -2.5638 6 7 2.7166 3.3728 -0.7303 7 7 2.7248 3.3795 0.6704 8 6 3.1211 4.5017 1.5246 9 6 4.6412 4.4983 1.6987 10 6 5.2262 3.2361 2.2781 11 1 5.6060 2.4665 1.6226 12 6 5.2765 3.0638 3.6452 13 7 5.6926 1.9227 4.1492 14 14 4.7535 4.4513 4.7812 15 1 5.8962 5.3761 4.9918 16 1 3.6226 5.1934 4.1684 17 1 4.3259 3.8875 6.0868 18 6 5.4736 5.2497 0.6579 19 6 5.3130 5.8225 2.0675 20 6 2.2977 2.1715 1.0941 21 6 2.1434 1.7366 2.5287 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.1450 1.9920 -2.9094 28 1 2.8803 2.2764 -3.1850 29 1 2.3166 0.6808 -2.6331 30 1 2.6435 4.4027 2.4995 31 1 2.8105 5.4383 1.0614 32 1 5.7277 1.8013 5.1111 33 1 6.4443 4.8312 0.3923 34 1 4.9383 5.7464 -0.1514 35 1 4.6721 6.6962 2.1859 36 1 6.1782 5.7807 2.7293 37 1 1.1373 1.9742 2.8743 38 1 2.3086 0.6617 2.6023 39 1 2.8730 2.2593 3.1473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:47 Heat of formation + Delta-G solvation = 82.083867 kcal Electronic energy + Delta-G solvation = -18913.037652 eV Core-core repulsion = 16243.605729 eV Total energy + Delta-G solvation = -2669.431923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63799 -37.12420 -33.87967 -32.87756 -32.21411 -29.90193 -28.87619 -26.17873 -25.90522 -24.65668 -22.40605 -21.66043 -19.47395 -18.78080 -18.49256 -16.52816 -15.39107 -15.05763 -14.76030 -14.11238 -13.82520 -13.60868 -13.06433 -12.89832 -12.73904 -12.59810 -12.46022 -12.09339 -11.94359 -11.84131 -11.51601 -11.29246 -11.19400 -10.90663 -10.73572 -10.55654 -10.45098 -10.30910 -9.74734 -9.66369 -9.16481 -8.69513 -8.58122 -8.17367 -7.45179 -6.19539 -4.21356 2.69968 3.17178 3.24935 3.28659 3.37119 3.42468 4.29653 4.83301 5.06011 5.21447 5.36913 5.47001 5.59854 5.63257 5.73300 5.80193 5.80679 5.94525 5.95391 6.02838 6.05790 6.13427 6.13961 6.19173 6.24000 6.29581 6.40237 6.42218 6.57270 6.65020 6.72762 6.84074 6.92592 7.04688 7.06964 7.46544 7.62611 7.92903 8.43295 8.58925 8.86638 9.41601 10.91647 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.008673 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.838754 B = 3227.785213 C = 3876.302516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.036 4.036 3 C -0.262 4.262 4 C 0.061 3.939 5 C -0.063 4.063 6 N -0.304 5.304 7 N -0.333 5.333 8 C 0.164 3.836 9 C -0.019 4.019 10 C -0.477 4.477 11 H 0.076 0.924 12 C 0.080 3.920 13 N -0.889 5.889 14 Si 0.872 3.128 15 H -0.275 1.275 16 H -0.263 1.263 17 H -0.293 1.293 18 C -0.167 4.167 19 C -0.198 4.198 20 C 0.125 3.875 21 C -0.097 4.097 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.265 0.735 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.945 -0.063 -5.458 10.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.273 4.273 4 C -0.104 4.104 5 C -0.122 4.122 6 N -0.127 5.127 7 N -0.112 5.112 8 C 0.043 3.957 9 C -0.020 4.020 10 C -0.514 4.514 11 H 0.094 0.906 12 C -0.123 4.123 13 N -0.526 5.526 14 Si 0.700 3.300 15 H -0.201 1.201 16 H -0.188 1.188 17 H -0.219 1.219 18 C -0.204 4.204 19 C -0.236 4.236 20 C -0.004 4.004 21 C -0.155 4.155 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.460 1.116 -5.546 10.177 hybrid contribution -0.258 0.072 1.096 1.128 sum -8.718 1.189 -4.451 9.860 Atomic orbital electron populations 1.21735 0.96368 1.00293 1.01536 1.19674 0.94411 0.91867 1.01529 1.19427 1.18153 0.98515 0.91191 1.21915 1.00311 0.92164 0.96028 1.20024 1.01691 1.00969 0.89536 1.77134 1.24891 1.21159 0.89522 1.48167 1.48533 1.10959 1.03566 1.21505 0.97044 0.85514 0.91669 1.19728 0.89228 0.92760 1.00334 1.20150 1.39612 1.00071 0.91614 0.90623 1.24941 0.94446 0.95113 0.97760 1.69902 1.46552 1.23548 1.12603 0.87016 0.79932 0.82978 0.80060 1.20117 1.18811 1.21933 1.22754 1.02067 1.04537 0.91043 1.23011 1.03743 0.97272 0.99568 1.20662 0.96957 0.86377 0.96401 1.20520 1.01749 1.02883 0.90311 0.93204 0.93458 0.93157 0.92131 0.91911 0.91571 0.91640 0.91132 0.89685 0.91415 0.92463 0.89661 0.90634 0.90841 0.89128 0.92080 0.90345 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.89 37.16 0.37 -1.44 16 2 C -0.04 -0.55 6.02 -27.88 -0.17 -0.71 16 3 C -0.26 -4.91 5.35 -105.05 -0.56 -5.47 16 4 C 0.06 1.15 7.22 -82.40 -0.59 0.56 16 5 C -0.06 -0.90 10.26 36.01 0.37 -0.53 16 6 N -0.30 -6.51 12.58 33.67 0.42 -6.09 16 7 N -0.33 -7.20 3.40 -57.14 -0.19 -7.40 16 8 C 0.16 3.46 5.84 -4.04 -0.02 3.43 16 9 C -0.02 -0.43 1.09 -155.66 -0.17 -0.60 16 10 C -0.48 -12.72 8.36 -34.44 -0.29 -13.01 16 11 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 12 C 0.08 2.14 4.30 -17.82 -0.08 2.06 16 13 N -0.89 -25.34 13.96 55.43 0.77 -24.57 16 14 Si 0.87 20.27 24.74 -169.99 -4.21 16.06 16 15 H -0.28 -6.40 7.06 56.52 0.40 -6.00 16 16 H -0.26 -5.69 5.93 56.52 0.34 -5.35 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 C -0.17 -3.52 9.94 -26.73 -0.27 -3.79 16 19 C -0.20 -4.11 7.57 -26.73 -0.20 -4.31 16 20 C 0.13 2.57 6.69 -82.26 -0.55 2.02 16 21 C -0.10 -1.84 9.65 36.01 0.35 -1.49 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.83 7.26 -51.93 -0.38 0.46 16 26 H 0.06 0.96 7.15 -51.93 -0.37 0.58 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.88 7.26 -51.93 -0.38 0.50 16 30 H 0.09 1.75 5.97 -51.93 -0.31 1.44 16 31 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 32 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.09 1.97 7.04 -51.92 -0.37 1.60 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.42 7.15 -51.93 -0.37 1.05 16 39 H 0.09 2.04 5.67 -51.93 -0.29 1.74 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -29.37 312.17 -6.63 -36.01 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.32 Total: 4.55 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -1.82 Total: -23.27 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 1.00 Total: -38.05 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.21 Total: 16.06 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.37 -6.63 -36.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.089 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds