Wall clock time and date at job start Mon Mar 30 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47161 * 2 1 4 4 C 1.39879 * 126.04004 * 270.00009 * 3 2 1 5 5 C 1.50699 * 125.89480 * 359.97438 * 4 3 2 6 6 N 1.30833 * 108.20388 * 179.74176 * 4 3 2 7 7 N 1.40081 * 108.20372 * 0.40121 * 6 4 3 8 8 C 1.46500 * 126.03540 * 179.85661 * 7 6 4 9 9 C 1.53002 * 109.47252 * 275.75639 * 8 7 6 10 10 C 1.50699 * 115.55184 * 302.43686 * 9 8 7 11 11 H 1.07995 * 120.00091 * 94.86695 * 10 9 8 12 12 C 1.37884 * 119.99955 * 274.87023 * 10 9 8 13 13 N 1.31507 * 119.99653 * 174.84842 * 12 10 9 14 14 Si 1.86791 * 119.99781 * 354.84607 * 12 10 9 15 15 H 1.48505 * 109.47278 * 275.32882 * 14 12 10 16 16 H 1.48498 * 109.47640 * 35.33334 * 14 12 10 17 17 H 1.48504 * 109.47000 * 155.33064 * 14 12 10 18 18 C 1.52999 * 117.51649 * 88.13346 * 9 8 7 19 19 C 1.52999 * 60.00048 * 107.48128 * 18 9 8 20 20 C 1.34946 * 107.92640 * 359.59205 * 7 6 4 21 21 C 1.50705 * 126.12499 * 180.26200 * 20 7 6 22 22 H 1.08998 * 109.46707 * 59.99998 * 1 2 3 23 23 H 1.08996 * 109.47001 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47067 * 300.00502 * 1 2 3 25 25 H 1.08997 * 109.47407 * 239.99721 * 2 1 3 26 26 H 1.08995 * 109.47344 * 119.99621 * 2 1 3 27 27 H 1.09001 * 109.46894 * 90.00335 * 5 4 3 28 28 H 1.08995 * 109.47205 * 209.99839 * 5 4 3 29 29 H 1.09002 * 109.47455 * 330.00491 * 5 4 3 30 30 H 1.09006 * 109.47076 * 155.75957 * 8 7 6 31 31 H 1.08998 * 109.47352 * 35.76098 * 8 7 6 32 32 H 0.97009 * 119.99739 * 180.02562 * 13 12 10 33 33 H 1.08998 * 117.49863 * 214.97419 * 18 9 8 34 34 H 1.09005 * 117.49734 * 359.97438 * 18 9 8 35 35 H 1.09003 * 117.50610 * 252.51113 * 19 18 9 36 36 H 1.09009 * 117.49643 * 107.48740 * 19 18 9 37 37 H 1.09001 * 109.47348 * 90.00291 * 21 20 7 38 38 H 1.09004 * 109.46777 * 210.00498 * 21 20 7 39 39 H 1.09006 * 109.47228 * 329.99575 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3067 2.1967 -1.1311 5 6 2.1514 1.7560 -2.5638 6 7 2.7166 3.3728 -0.7303 7 7 2.7248 3.3795 0.6704 8 6 3.1211 4.5017 1.5246 9 6 4.6412 4.4983 1.6987 10 6 5.2262 3.2361 2.2781 11 1 5.6060 2.4665 1.6226 12 6 5.2765 3.0638 3.6452 13 7 5.6926 1.9227 4.1492 14 14 4.7535 4.4513 4.7812 15 1 5.8962 5.3761 4.9918 16 1 3.6226 5.1934 4.1684 17 1 4.3259 3.8875 6.0868 18 6 5.4736 5.2497 0.6579 19 6 5.3130 5.8225 2.0675 20 6 2.2977 2.1715 1.0941 21 6 2.1434 1.7366 2.5287 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.1450 1.9920 -2.9094 28 1 2.8803 2.2764 -3.1850 29 1 2.3166 0.6808 -2.6331 30 1 2.6435 4.4027 2.4995 31 1 2.8105 5.4383 1.0614 32 1 5.7277 1.8013 5.1111 33 1 6.4443 4.8312 0.3923 34 1 4.9383 5.7464 -0.1514 35 1 4.6721 6.6962 2.1859 36 1 6.1782 5.7807 2.7293 37 1 1.1373 1.9742 2.8743 38 1 2.3086 0.6617 2.6023 39 1 2.8730 2.2593 3.1473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:47 Heat of formation + Delta-G solvation = 65.258116 kcal Electronic energy + Delta-G solvation = -18913.767272 eV Core-core repulsion = 16243.605729 eV Total energy + Delta-G solvation = -2670.161543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.12950 -38.84722 -35.21304 -34.38241 -34.19394 -31.30871 -30.22174 -27.85614 -27.60731 -26.20339 -23.69540 -23.32401 -21.20302 -20.27721 -20.05079 -18.40197 -17.05659 -16.82281 -16.35578 -15.46000 -15.32844 -15.06440 -14.74533 -14.46852 -14.26126 -14.03061 -13.79735 -13.47459 -13.29844 -13.11504 -13.03773 -12.95467 -12.63785 -12.57388 -12.21621 -12.10675 -12.01997 -11.68914 -11.61459 -11.12725 -11.02365 -10.63703 -10.40518 -9.72689 -8.93024 -8.27409 -6.34076 1.15426 1.34278 1.37213 1.46795 1.83781 1.99444 2.34535 3.05532 3.13705 3.76147 3.93460 4.00719 4.19773 4.28539 4.32279 4.33701 4.39604 4.50036 4.61968 4.64337 4.68711 4.76332 4.77761 4.88773 4.95184 4.99364 5.06275 5.08689 5.18062 5.22588 5.25781 5.37853 5.47282 5.52984 5.60665 5.65894 6.08053 6.29021 6.42314 6.69536 7.07449 7.32337 8.87829 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.008673 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.838754 B = 3227.785213 C = 3876.302516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.037 4.037 3 C -0.266 4.266 4 C 0.055 3.945 5 C -0.061 4.061 6 N -0.335 5.335 7 N -0.350 5.350 8 C 0.167 3.833 9 C -0.041 4.041 10 C -0.472 4.472 11 H 0.013 0.987 12 C 0.038 3.962 13 N -0.937 5.937 14 Si 0.927 3.073 15 H -0.270 1.270 16 H -0.232 1.232 17 H -0.294 1.294 18 C -0.163 4.163 19 C -0.180 4.180 20 C 0.097 3.903 21 C -0.089 4.089 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.266 0.734 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.907 1.089 -6.007 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.277 4.277 4 C -0.111 4.111 5 C -0.120 4.120 6 N -0.158 5.158 7 N -0.130 5.130 8 C 0.046 3.954 9 C -0.042 4.042 10 C -0.509 4.509 11 H 0.031 0.969 12 C -0.161 4.161 13 N -0.575 5.575 14 Si 0.752 3.248 15 H -0.196 1.196 16 H -0.155 1.155 17 H -0.221 1.221 18 C -0.200 4.200 19 C -0.218 4.218 20 C -0.031 4.031 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.430 2.277 -6.120 12.305 hybrid contribution 0.408 -0.413 1.159 1.296 sum -10.022 1.865 -4.961 11.337 Atomic orbital electron populations 1.21658 0.94207 1.01823 1.01431 1.19779 0.96212 0.89621 1.01912 1.19948 1.17152 0.99905 0.90669 1.22709 0.98742 0.91429 0.98172 1.20185 1.03139 1.02046 0.86586 1.77063 1.26339 1.22778 0.89617 1.48260 1.49533 1.11400 1.03801 1.21443 0.95232 0.86554 0.92208 1.19660 0.90604 0.92009 1.01969 1.19986 1.39521 1.00376 0.91046 0.96896 1.25615 0.94205 0.97252 0.99018 1.70047 1.48563 1.25977 1.12936 0.86108 0.80719 0.80180 0.77838 1.19572 1.15480 1.22118 1.22721 1.01143 1.04231 0.91954 1.23064 1.03239 0.96974 0.98499 1.21085 0.97828 0.86786 0.97418 1.20459 1.02471 1.02430 0.89396 0.92716 0.91111 0.93844 0.90660 0.92627 0.89235 0.91492 0.89273 0.89452 0.89336 0.92474 0.91324 0.88787 0.87231 0.90158 0.89155 0.90292 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.04 -1.05 6.02 29.85 0.18 -0.87 16 3 C -0.27 -9.77 5.35 -20.14 -0.11 -9.88 16 4 C 0.05 2.01 7.22 43.10 0.31 2.32 16 5 C -0.06 -1.59 10.26 71.24 0.73 -0.86 16 6 N -0.33 -14.14 12.58 -47.38 -0.60 -14.74 16 7 N -0.35 -15.04 3.40 -334.69 -1.14 -16.18 16 8 C 0.17 6.82 5.84 86.38 0.50 7.32 16 9 C -0.04 -1.84 1.09 -52.93 -0.06 -1.90 16 10 C -0.47 -26.03 8.36 25.60 0.21 -25.82 16 11 H 0.01 0.85 8.06 -2.91 -0.02 0.82 16 12 C 0.04 2.06 4.30 84.66 0.36 2.43 16 13 N -0.94 -55.42 13.96 21.45 0.30 -55.12 16 14 Si 0.93 41.17 24.74 68.60 1.70 42.86 16 15 H -0.27 -11.76 7.06 99.48 0.70 -11.06 16 16 H -0.23 -9.06 5.93 99.48 0.59 -8.47 16 17 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 18 C -0.16 -6.75 9.94 30.59 0.30 -6.45 16 19 C -0.18 -7.05 7.57 30.59 0.23 -6.81 16 20 C 0.10 4.00 6.69 41.41 0.28 4.28 16 21 C -0.09 -3.42 9.65 71.24 0.69 -2.73 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.91 7.26 -2.39 -0.02 1.89 16 26 H 0.06 1.65 7.15 -2.39 -0.02 1.64 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 1.96 7.26 -2.39 -0.02 1.95 16 30 H 0.09 3.44 5.97 -2.38 -0.01 3.42 16 31 H 0.09 3.18 8.11 -2.39 -0.02 3.16 16 32 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 33 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.09 3.53 8.14 -2.38 -0.02 3.51 16 35 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.08 3.32 7.04 -2.38 -0.02 3.31 16 37 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.08 2.92 7.15 -2.38 -0.02 2.90 16 39 H 0.06 2.80 5.67 -2.38 -0.01 2.78 16 Total: -1.00 -66.12 312.17 5.51 -60.61 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.90 Total: 23.90 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 4.35 Total: -41.32 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -1.43 Total: -86.05 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.70 Total: 42.86 kcal Total: -66.12 5.51 -60.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.863 kcal (2) G-P(sol) polarization free energy of solvation -66.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds