Wall clock time and date at job start Mon Mar 30 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47413 * 2 1 4 4 H 1.08996 * 109.47167 * 181.64607 * 3 2 1 5 5 C 1.50702 * 109.46669 * 61.65140 * 3 2 1 6 6 H 1.08001 * 119.99751 * 243.99858 * 5 3 2 7 7 C 1.37878 * 120.00417 * 64.00171 * 5 3 2 8 8 N 1.31510 * 120.00223 * 195.34064 * 7 5 3 9 9 Si 1.86802 * 119.99712 * 15.33830 * 7 5 3 10 10 H 1.48506 * 109.46960 * 91.83514 * 9 7 5 11 11 H 1.48500 * 109.47369 * 211.83475 * 9 7 5 12 12 H 1.48500 * 109.47096 * 331.83768 * 9 7 5 13 13 N 1.46891 * 109.46911 * 301.65462 * 3 2 1 14 14 C 1.46907 * 110.99706 * 175.77925 * 13 3 2 15 15 C 1.46901 * 111.00124 * 299.72755 * 13 3 2 16 16 C 1.50699 * 109.47247 * 169.89662 * 15 13 3 17 17 C 1.38229 * 119.61875 * 94.73454 * 16 15 13 18 18 C 1.38628 * 119.15870 * 179.71403 * 17 16 15 19 19 C 1.38671 * 118.42021 * 0.54297 * 18 17 16 20 20 C 1.38179 * 119.16680 * 359.73432 * 19 18 17 21 21 C 1.50699 * 119.61955 * 180.02562 * 20 19 18 22 22 N 1.31857 * 119.61899 * 275.00180 * 16 15 13 23 23 H 1.09005 * 109.47322 * 175.05735 * 1 2 3 24 24 H 1.08999 * 109.47500 * 55.05364 * 1 2 3 25 25 H 1.09002 * 109.47037 * 295.05558 * 1 2 3 26 26 H 1.09001 * 109.47369 * 120.00065 * 2 1 3 27 27 H 1.09004 * 109.47345 * 240.00165 * 2 1 3 28 28 H 0.97008 * 119.99959 * 179.97438 * 8 7 5 29 29 H 1.08992 * 109.47204 * 59.99862 * 14 13 3 30 30 H 1.09001 * 109.46898 * 179.97438 * 14 13 3 31 31 H 1.08999 * 109.46966 * 299.99481 * 14 13 3 32 32 H 1.08998 * 109.47026 * 289.89881 * 15 13 3 33 33 H 1.09005 * 109.46965 * 49.89978 * 15 13 3 34 34 H 1.07997 * 120.41935 * 359.97290 * 17 16 15 35 35 H 1.07997 * 120.78627 * 180.25676 * 18 17 16 36 36 H 1.08004 * 120.41766 * 179.75645 * 19 18 17 37 37 H 1.09001 * 109.46635 * 269.98051 * 21 20 19 38 38 H 1.09004 * 109.47238 * 29.97799 * 21 20 19 39 39 H 1.09001 * 109.46830 * 149.98176 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 -0.0295 5 6 1.5714 2.1409 1.2505 6 1 0.8960 2.9807 1.1791 7 6 2.0048 1.7080 2.4857 8 7 1.3827 2.1007 3.5757 9 14 3.4758 0.5634 2.6108 10 1 4.7145 1.3656 2.7769 11 1 3.3066 -0.3341 3.7817 12 1 3.5759 -0.2511 1.3731 13 7 1.5180 2.1464 -1.1789 14 6 1.9054 3.5633 -1.1603 15 6 1.9608 1.4959 -2.4193 16 6 1.2150 2.0845 -3.5891 17 6 1.7816 3.1190 -4.3099 18 6 1.0898 3.6493 -5.3878 19 6 -0.1565 3.1245 -5.6949 20 6 -0.6616 2.0941 -4.9253 21 6 -2.0147 1.5158 -5.2503 22 7 0.0273 1.6102 -3.9100 23 1 -0.3634 -1.0239 -0.0885 24 1 -0.3634 0.5886 -0.8423 25 1 -0.3633 0.4352 0.9310 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6874 1.7958 4.4447 29 1 2.9925 3.6428 -1.1587 30 1 1.5064 4.0607 -2.0444 31 1 1.5051 4.0377 -0.2643 32 1 3.0306 1.6570 -2.5522 33 1 1.7589 0.4263 -2.3608 34 1 2.7526 3.5064 -4.0392 35 1 1.5095 4.4551 -5.9716 36 1 -0.7252 3.5161 -6.5255 37 1 -2.7837 2.0606 -4.7026 38 1 -2.1998 1.6038 -6.3209 39 1 -2.0392 0.4647 -4.9625 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094915779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:10 Heat of formation + Delta-G solvation = 22.152955 kcal Electronic energy + Delta-G solvation = -18485.649152 eV Core-core repulsion = 15813.618429 eV Total energy + Delta-G solvation = -2672.030723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24804 -39.04432 -35.24405 -33.88814 -33.44824 -32.93875 -29.71260 -28.37355 -27.92192 -25.77609 -24.14987 -23.04109 -22.56008 -20.77006 -18.52755 -17.55703 -17.22715 -16.87196 -16.23702 -16.07596 -15.79004 -15.18929 -14.86551 -14.60180 -14.41659 -14.03011 -13.72324 -13.67399 -13.29400 -12.96950 -12.93352 -12.87803 -12.66239 -12.59343 -12.39095 -12.05873 -11.96355 -11.72826 -11.15216 -10.94309 -10.66523 -10.52139 -10.21201 -9.68594 -8.92726 -8.24895 -6.21312 0.21868 0.47311 1.33826 1.37888 1.46482 2.37612 2.79149 3.09022 3.32730 3.45858 3.88444 3.97605 4.21294 4.27813 4.31818 4.47559 4.51324 4.54223 4.59600 4.71585 4.74125 4.79731 4.82316 4.83738 4.93048 5.06373 5.15847 5.23598 5.25728 5.30146 5.33554 5.39958 5.41658 5.73997 5.81688 5.90001 6.06540 6.38587 6.72147 6.81969 7.24934 7.40588 8.91563 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.034094 B = 0.005967 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.049844 B = 4691.025582 C = 4961.957219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C 0.195 3.805 4 H -0.009 1.009 5 C -0.496 4.496 6 H 0.037 0.963 7 C 0.022 3.978 8 N -0.942 5.942 9 Si 0.919 3.081 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.229 1.229 13 N -0.527 5.527 14 C 0.043 3.957 15 C 0.096 3.904 16 C 0.132 3.868 17 C -0.182 4.182 18 C -0.071 4.071 19 C -0.177 4.177 20 C 0.105 3.895 21 C -0.100 4.100 22 N -0.502 5.502 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.263 0.737 29 H 0.022 0.978 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 0.160 -20.624 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.153 4.153 3 C 0.087 3.913 4 H 0.009 0.991 5 C -0.535 4.535 6 H 0.055 0.945 7 C -0.176 4.176 8 N -0.582 5.582 9 Si 0.743 3.257 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.152 1.152 13 N -0.252 5.252 14 C -0.105 4.105 15 C -0.032 4.032 16 C -0.006 4.006 17 C -0.203 4.203 18 C -0.097 4.097 19 C -0.197 4.197 20 C -0.033 4.033 21 C -0.157 4.157 22 N -0.213 5.213 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.182 0.818 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.794 -0.568 -19.922 19.946 hybrid contribution 1.772 0.478 0.565 1.920 sum 0.978 -0.089 -19.357 19.382 Atomic orbital electron populations 1.21312 0.95447 0.99211 1.01029 1.21888 0.97378 0.96677 0.99381 1.19495 0.91692 0.91863 0.88260 0.99116 1.20964 1.27359 1.15314 0.89814 0.94471 1.25607 0.98996 0.97732 0.95239 1.70106 1.40925 1.48370 0.98770 0.86320 0.80365 0.79879 0.79118 1.20461 1.21388 1.15226 1.61768 1.60223 1.02397 1.00785 1.22177 0.97635 0.89462 1.01223 1.21034 0.95449 0.99524 0.87167 1.21101 0.90990 0.93541 0.94945 1.22153 1.02661 0.97837 0.97628 1.21927 0.94016 0.98534 0.95215 1.22282 0.97291 0.97824 1.02307 1.21866 0.97269 0.93676 0.90482 1.20760 0.90393 1.01222 1.03311 1.67282 1.07209 1.30605 1.16181 0.93575 0.92636 0.95372 0.93670 0.92579 0.92763 0.95926 0.91612 0.93199 0.92979 0.89824 0.83970 0.81663 0.81821 0.90309 0.88041 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.95 9.50 71.98 0.68 -4.27 16 2 C -0.12 -5.05 4.64 30.59 0.14 -4.90 16 3 C 0.19 9.16 1.31 44.17 0.06 9.21 16 4 H -0.01 -0.40 6.85 -2.39 -0.02 -0.42 16 5 C -0.50 -28.07 7.18 25.60 0.18 -27.88 16 6 H 0.04 2.38 6.79 -2.91 -0.02 2.36 16 7 C 0.02 1.27 5.35 84.66 0.45 1.72 16 8 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 9 Si 0.92 43.59 25.82 68.60 1.77 45.36 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 12 H -0.23 -9.89 5.39 99.48 0.54 -9.35 16 13 N -0.53 -22.11 3.69 -906.04 -3.34 -25.45 16 14 C 0.04 1.70 8.95 127.69 1.14 2.85 16 15 C 0.10 3.36 5.10 85.56 0.44 3.80 16 16 C 0.13 4.20 5.66 42.55 0.24 4.44 16 17 C -0.18 -4.57 8.24 22.36 0.18 -4.39 16 18 C -0.07 -1.40 10.18 22.47 0.23 -1.17 16 19 C -0.18 -3.52 9.74 22.36 0.22 -3.30 16 20 C 0.10 2.69 6.78 42.54 0.29 2.98 16 21 C -0.10 -1.90 10.17 71.24 0.72 -1.18 16 22 N -0.50 -16.56 10.19 -172.08 -1.75 -18.31 16 23 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.05 2.49 7.40 -2.39 -0.02 2.47 16 25 H 0.03 1.40 7.44 -2.39 -0.02 1.38 16 26 H 0.04 2.04 4.77 -2.39 -0.01 2.03 16 27 H 0.06 2.15 6.29 -2.38 -0.01 2.14 16 28 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 2.27 6.15 -2.39 -0.01 2.26 16 31 H 0.05 2.27 6.29 -2.39 -0.02 2.25 16 32 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16 33 H 0.08 3.00 5.87 -2.38 -0.01 2.99 16 34 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 1.25 8.08 -2.38 -0.02 1.23 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -68.94 305.06 2.81 -66.13 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.85 Total: 12.87 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 4.98 Total: -22.10 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -4.80 Total: -102.27 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.77 Total: 45.36 kcal Total: -68.94 2.81 -66.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094915779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.285 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds