Wall clock time and date at job start Mon Mar 30 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47023 * 2 1 4 4 C 1.38674 * 120.41432 * 264.99512 * 3 2 1 5 5 C 1.38629 * 118.41898 * 180.02562 * 4 3 2 6 6 C 1.38229 * 119.16125 * 359.97163 * 5 4 3 7 7 N 1.31853 * 120.76313 * 0.02803 * 6 5 4 8 8 C 1.31878 * 121.72595 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.62025 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.47347 * 84.42287 * 9 8 7 11 11 C 1.46900 * 111.00164 * 185.61556 * 10 9 8 12 12 H 1.08999 * 109.47176 * 326.89155 * 11 10 9 13 13 C 1.50696 * 109.46805 * 86.89198 * 11 10 9 14 14 H 1.08002 * 120.00567 * 0.02562 * 13 11 10 15 15 C 1.37883 * 120.00143 * 179.97438 * 13 11 10 16 16 N 1.31513 * 119.99586 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00333 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46961 * 90.00217 * 17 15 13 19 19 H 1.48499 * 109.47542 * 210.00138 * 17 15 13 20 20 H 1.48499 * 109.47249 * 330.00683 * 17 15 13 21 21 C 1.52995 * 109.47229 * 206.89354 * 11 10 9 22 22 C 1.53002 * 109.47354 * 65.81382 * 21 11 10 23 23 H 1.08999 * 109.47366 * 65.74430 * 1 2 3 24 24 H 1.08996 * 109.46866 * 185.74209 * 1 2 3 25 25 H 1.08998 * 109.47440 * 305.74558 * 1 2 3 26 26 H 1.08996 * 109.47288 * 240.00176 * 2 1 3 27 27 H 1.08999 * 109.46856 * 119.99617 * 2 1 3 28 28 H 1.08002 * 120.79442 * 0.03550 * 4 3 2 29 29 H 1.07999 * 120.42514 * 180.02562 * 5 4 3 30 30 H 1.08007 * 119.61777 * 180.30149 * 6 5 4 31 31 H 1.08998 * 109.47511 * 204.42738 * 9 8 7 32 32 H 1.08998 * 109.47181 * 324.42736 * 9 8 7 33 33 H 1.00901 * 111.00284 * 309.57286 * 10 9 8 34 34 H 0.97008 * 120.00063 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47078 * 185.81503 * 21 11 10 36 36 H 1.09000 * 109.47069 * 305.81117 * 21 11 10 37 37 H 1.09001 * 109.46783 * 304.42391 * 22 21 11 38 38 H 1.08995 * 109.46801 * 64.42740 * 22 21 11 39 39 H 1.08997 * 109.46903 * 184.42969 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3647 2.0480 -1.1913 5 6 2.8230 3.3554 -1.1432 6 6 2.9321 3.9862 0.0819 7 7 2.6069 3.3586 1.1950 8 6 2.1675 2.1152 1.1870 9 6 1.8087 1.4437 2.4875 10 7 0.4310 1.7955 2.8565 11 6 0.0905 1.2677 4.1845 12 1 0.6099 0.3228 4.3440 13 6 0.5107 2.2567 5.2410 14 1 0.9831 3.1847 4.9546 15 6 0.2913 1.9773 6.5732 16 7 -0.2844 0.8474 6.9219 17 14 0.8128 3.2028 7.8829 18 1 -0.3036 4.1441 8.1526 19 1 1.1600 2.4763 9.1306 20 1 1.9966 3.9625 7.4066 21 6 -1.4200 1.0401 4.2709 22 6 -1.8252 -0.0690 3.2978 23 1 -0.3634 0.4222 -0.9369 24 1 -0.3633 -1.0225 0.1028 25 1 -0.3634 0.6003 0.8340 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2686 1.5302 -2.1343 29 1 3.0906 3.8749 -2.0514 30 1 3.2838 5.0064 0.1275 31 1 1.8893 0.3628 2.3728 32 1 2.4907 1.7779 3.2693 33 1 0.2897 2.7938 2.8171 34 1 -0.4385 0.6506 7.8592 35 1 -1.6858 0.7473 5.2866 36 1 -1.9417 1.9609 4.0100 37 1 -1.4893 0.1885 2.2933 38 1 -1.3651 -1.0080 3.6054 39 1 -2.9098 -0.1772 3.3017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134678234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:42 Heat of formation + Delta-G solvation = 16.977841 kcal Electronic energy + Delta-G solvation = -18396.762128 eV Core-core repulsion = 15724.506996 eV Total energy + Delta-G solvation = -2672.255133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.17154 -36.22080 -34.50852 -33.06965 -31.65212 -30.77122 -29.27854 -26.83175 -24.73570 -24.10605 -22.57748 -21.67894 -20.68791 -19.46611 -16.92312 -16.33895 -16.15654 -15.02476 -14.86567 -14.22226 -13.88913 -13.69093 -13.30143 -13.18127 -12.87725 -12.62706 -12.44351 -11.91727 -11.86582 -11.67102 -11.22183 -11.11631 -10.91097 -10.74342 -10.67474 -10.43664 -10.10315 -9.64211 -9.56413 -9.43797 -9.10917 -8.98693 -8.56969 -8.34266 -7.23845 -5.96426 -4.08287 1.33081 1.49333 3.30642 3.37508 3.41994 3.99843 4.43867 4.59445 4.88223 4.95490 5.10574 5.18771 5.29212 5.44946 5.59642 5.64437 5.71244 5.86460 5.98402 6.07089 6.18566 6.24800 6.34332 6.41765 6.49733 6.53052 6.63530 6.67816 6.85899 6.96598 7.13824 7.23432 7.46424 7.60361 7.81771 8.10720 8.16846 8.31420 8.33786 8.66744 9.03851 9.59154 11.03887 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023386 B = 0.006665 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.004825 B = 4200.175245 C = 5134.705950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.077 4.077 3 C -0.117 4.117 4 C -0.081 4.081 5 C -0.183 4.183 6 C 0.090 3.910 7 N -0.476 5.476 8 C 0.146 3.854 9 C 0.108 3.892 10 N -0.677 5.677 11 C 0.216 3.784 12 H 0.032 0.968 13 C -0.543 4.543 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.105 4.105 22 C -0.142 4.142 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.149 0.851 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.332 0.668 34 H 0.260 0.740 35 H 0.091 0.909 36 H 0.029 0.971 37 H 0.053 0.947 38 H 0.036 0.964 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -0.083 -14.678 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.114 4.114 3 C -0.120 4.120 4 C -0.107 4.107 5 C -0.204 4.204 6 C -0.067 4.067 7 N -0.185 5.185 8 C 0.008 3.992 9 C -0.022 4.022 10 N -0.307 5.307 11 C 0.108 3.892 12 H 0.050 0.950 13 C -0.582 4.582 14 H 0.074 0.926 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.144 4.144 22 C -0.199 4.199 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.148 0.852 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.328 -0.301 -14.031 14.424 hybrid contribution 0.779 0.983 0.464 1.337 sum 4.107 0.681 -13.567 14.192 Atomic orbital electron populations 1.21930 0.93866 1.02310 1.03195 1.20483 0.97184 0.91489 1.02294 1.20748 0.99719 0.98140 0.93379 1.21415 0.96733 0.94699 0.97862 1.22019 1.02980 0.96028 0.99340 1.22682 0.96502 0.99673 0.87890 1.67570 1.10327 1.09465 1.31104 1.21438 0.92661 0.89569 0.95518 1.20792 0.92821 0.98224 0.90370 1.61037 1.18791 1.18508 1.32380 1.19146 0.92733 0.94930 0.82374 0.94977 1.21896 1.39556 1.04760 0.91986 0.92627 1.24917 0.94865 0.95182 0.98544 1.69878 1.42632 1.23021 1.16967 0.86658 0.79007 0.81429 0.81297 1.20698 1.21277 1.20008 1.21484 0.97353 0.95376 1.00145 1.21803 0.97921 0.99423 1.00791 0.93800 0.92844 0.88802 0.92000 0.90332 0.85466 0.85463 0.83352 0.90393 0.93292 0.85170 0.92954 0.89118 0.95175 0.92787 0.94527 0.95730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.87 37.16 0.37 -1.72 16 2 C -0.08 -0.99 5.55 -27.88 -0.15 -1.14 16 3 C -0.12 -1.70 5.15 -104.48 -0.54 -2.24 16 4 C -0.08 -1.00 9.84 -39.28 -0.39 -1.39 16 5 C -0.18 -2.18 10.11 -39.44 -0.40 -2.58 16 6 C 0.09 1.25 11.18 -17.55 -0.20 1.06 16 7 N -0.48 -8.34 10.27 -9.47 -0.10 -8.44 16 8 C 0.15 2.52 6.23 -82.59 -0.51 2.00 16 9 C 0.11 2.06 5.35 -4.97 -0.03 2.04 16 10 N -0.68 -14.05 4.58 -109.23 -0.50 -14.55 16 11 C 0.22 5.25 1.97 -68.87 -0.14 5.11 16 12 H 0.03 0.86 7.83 -51.93 -0.41 0.45 16 13 C -0.54 -14.71 8.39 -34.44 -0.29 -15.00 16 14 H 0.06 1.54 7.71 -52.49 -0.40 1.13 16 15 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 16 N -0.89 -24.99 11.29 55.43 0.63 -24.36 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.10 -2.48 5.45 -26.73 -0.15 -2.63 16 22 C -0.14 -2.84 9.86 37.16 0.37 -2.48 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.09 1.51 4.95 -51.93 -0.26 1.25 16 26 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 27 H 0.08 1.06 6.14 -51.93 -0.32 0.74 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.08 1.41 5.82 -51.93 -0.30 1.11 16 32 H 0.05 1.06 7.98 -51.93 -0.41 0.65 16 33 H 0.33 7.29 8.29 -39.29 -0.33 6.96 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.09 2.41 5.93 -51.93 -0.31 2.10 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 1.01 5.72 -51.93 -0.30 0.71 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -28.41 312.89 -8.40 -36.80 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.97 Total: 6.62 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.15 Total: -17.22 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.03 Total: -47.36 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.41 -8.40 -36.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134678234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.781 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds