Wall clock time and date at job start Mon Mar 30 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47023 * 2 1 4 4 C 1.38674 * 120.41432 * 264.99512 * 3 2 1 5 5 C 1.38629 * 118.41898 * 180.02562 * 4 3 2 6 6 C 1.38229 * 119.16125 * 359.97163 * 5 4 3 7 7 N 1.31853 * 120.76313 * 0.02803 * 6 5 4 8 8 C 1.31878 * 121.72595 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.62025 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.47347 * 84.42287 * 9 8 7 11 11 C 1.46900 * 111.00164 * 185.61556 * 10 9 8 12 12 H 1.08999 * 109.47176 * 326.89155 * 11 10 9 13 13 C 1.50696 * 109.46805 * 86.89198 * 11 10 9 14 14 H 1.08002 * 120.00567 * 0.02562 * 13 11 10 15 15 C 1.37883 * 120.00143 * 179.97438 * 13 11 10 16 16 N 1.31513 * 119.99586 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00333 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46961 * 90.00217 * 17 15 13 19 19 H 1.48499 * 109.47542 * 210.00138 * 17 15 13 20 20 H 1.48499 * 109.47249 * 330.00683 * 17 15 13 21 21 C 1.52995 * 109.47229 * 206.89354 * 11 10 9 22 22 C 1.53002 * 109.47354 * 65.81382 * 21 11 10 23 23 H 1.08999 * 109.47366 * 65.74430 * 1 2 3 24 24 H 1.08996 * 109.46866 * 185.74209 * 1 2 3 25 25 H 1.08998 * 109.47440 * 305.74558 * 1 2 3 26 26 H 1.08996 * 109.47288 * 240.00176 * 2 1 3 27 27 H 1.08999 * 109.46856 * 119.99617 * 2 1 3 28 28 H 1.08002 * 120.79442 * 0.03550 * 4 3 2 29 29 H 1.07999 * 120.42514 * 180.02562 * 5 4 3 30 30 H 1.08007 * 119.61777 * 180.30149 * 6 5 4 31 31 H 1.08998 * 109.47511 * 204.42738 * 9 8 7 32 32 H 1.08998 * 109.47181 * 324.42736 * 9 8 7 33 33 H 1.00901 * 111.00284 * 309.57286 * 10 9 8 34 34 H 0.97008 * 120.00063 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47078 * 185.81503 * 21 11 10 36 36 H 1.09000 * 109.47069 * 305.81117 * 21 11 10 37 37 H 1.09001 * 109.46783 * 304.42391 * 22 21 11 38 38 H 1.08995 * 109.46801 * 64.42740 * 22 21 11 39 39 H 1.08997 * 109.46903 * 184.42969 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3647 2.0480 -1.1913 5 6 2.8230 3.3554 -1.1432 6 6 2.9321 3.9862 0.0819 7 7 2.6069 3.3586 1.1950 8 6 2.1675 2.1152 1.1870 9 6 1.8087 1.4437 2.4875 10 7 0.4310 1.7955 2.8565 11 6 0.0905 1.2677 4.1845 12 1 0.6099 0.3228 4.3440 13 6 0.5107 2.2567 5.2410 14 1 0.9831 3.1847 4.9546 15 6 0.2913 1.9773 6.5732 16 7 -0.2844 0.8474 6.9219 17 14 0.8128 3.2028 7.8829 18 1 -0.3036 4.1441 8.1526 19 1 1.1600 2.4763 9.1306 20 1 1.9966 3.9625 7.4066 21 6 -1.4200 1.0401 4.2709 22 6 -1.8252 -0.0690 3.2978 23 1 -0.3634 0.4222 -0.9369 24 1 -0.3633 -1.0225 0.1028 25 1 -0.3634 0.6003 0.8340 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2686 1.5302 -2.1343 29 1 3.0906 3.8749 -2.0514 30 1 3.2838 5.0064 0.1275 31 1 1.8893 0.3628 2.3728 32 1 2.4907 1.7779 3.2693 33 1 0.2897 2.7938 2.8171 34 1 -0.4385 0.6506 7.8592 35 1 -1.6858 0.7473 5.2866 36 1 -1.9417 1.9609 4.0100 37 1 -1.4893 0.1885 2.2933 38 1 -1.3651 -1.0080 3.6054 39 1 -2.9098 -0.1772 3.3017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134678234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:42 Heat of formation + Delta-G solvation = 0.251253 kcal Electronic energy + Delta-G solvation = -18397.487448 eV Core-core repulsion = 15724.506996 eV Total energy + Delta-G solvation = -2672.980452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29386 -37.99510 -35.66868 -34.66505 -33.43359 -32.18412 -30.47474 -28.62123 -26.39333 -25.16416 -24.34324 -22.89552 -21.83545 -21.36677 -18.78121 -17.68611 -17.28276 -16.82355 -16.20983 -15.78564 -15.41640 -14.95518 -14.72382 -14.62026 -14.17895 -13.97308 -13.74543 -13.44863 -13.27818 -13.06254 -12.98595 -12.83229 -12.73207 -12.50913 -12.13330 -11.90410 -11.62624 -11.48209 -11.27195 -11.01194 -10.58875 -10.45410 -10.21302 -9.70848 -9.04872 -8.06315 -6.27192 0.24595 0.46046 1.36116 1.37642 1.47259 2.39692 2.87612 3.13612 3.43911 3.79847 3.96262 4.00123 4.08162 4.19381 4.50127 4.57606 4.64200 4.67027 4.72621 4.75598 4.83185 4.89119 4.95602 5.06112 5.17157 5.20446 5.23256 5.32473 5.41258 5.50984 5.54336 5.62906 5.73174 5.85198 5.91338 6.11602 6.19814 6.36397 6.74273 6.97575 7.19873 7.43366 8.90264 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023386 B = 0.006665 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.004825 B = 4200.175245 C = 5134.705950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.075 4.075 3 C -0.120 4.120 4 C -0.078 4.078 5 C -0.166 4.166 6 C 0.074 3.926 7 N -0.518 5.518 8 C 0.116 3.884 9 C 0.117 3.883 10 N -0.658 5.658 11 C 0.224 3.776 12 H 0.004 0.996 13 C -0.560 4.560 14 H 0.042 0.958 15 C 0.023 3.977 16 N -0.908 5.908 17 Si 0.947 3.053 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.278 1.278 21 C -0.100 4.100 22 C -0.130 4.130 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.165 0.835 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.084 0.916 32 H 0.011 0.989 33 H 0.324 0.676 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 0.201 -17.310 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.122 4.122 4 C -0.104 4.104 5 C -0.185 4.185 6 C -0.083 4.083 7 N -0.227 5.227 8 C -0.021 4.021 9 C -0.013 4.013 10 N -0.286 5.286 11 C 0.116 3.884 12 H 0.022 0.978 13 C -0.599 4.599 14 H 0.060 0.940 15 C -0.177 4.177 16 N -0.547 5.547 17 Si 0.773 3.227 18 H -0.200 1.200 19 H -0.205 1.205 20 H -0.203 1.203 21 C -0.139 4.139 22 C -0.187 4.187 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.182 0.818 29 H 0.186 0.814 30 H 0.188 0.812 31 H 0.102 0.898 32 H 0.029 0.971 33 H 0.140 0.860 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.574 -0.025 -16.670 17.048 hybrid contribution 0.758 0.933 1.188 1.690 sum 4.332 0.909 -15.482 16.102 Atomic orbital electron populations 1.21864 0.94183 1.02360 1.02572 1.20509 0.96812 0.90835 1.03135 1.20892 0.99446 0.98686 0.93203 1.21864 0.95281 0.94957 0.98294 1.22459 1.00409 0.95799 0.99870 1.23167 0.96513 1.00706 0.87963 1.67429 1.11673 1.10070 1.33557 1.21058 0.95565 0.90288 0.95211 1.20653 0.90732 0.98813 0.91096 1.60969 1.20225 1.17547 1.29876 1.18922 0.92963 0.93061 0.83487 0.97815 1.22154 1.39673 1.04832 0.93249 0.93977 1.25594 0.94958 0.96795 1.00367 1.69990 1.43131 1.24194 1.17369 0.85734 0.78519 0.79445 0.78980 1.20017 1.20538 1.20306 1.21326 0.96635 0.96390 0.99504 1.21668 0.99140 0.97631 1.00288 0.92442 0.91941 0.91802 0.88912 0.91696 0.81764 0.81378 0.81213 0.89803 0.97092 0.86045 0.92822 0.92063 0.95740 0.91429 0.94890 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.87 71.98 0.71 -3.08 16 2 C -0.08 -1.79 5.55 29.85 0.17 -1.62 16 3 C -0.12 -3.26 5.15 -19.77 -0.10 -3.36 16 4 C -0.08 -1.63 9.84 22.47 0.22 -1.41 16 5 C -0.17 -3.29 10.11 22.36 0.23 -3.06 16 6 C 0.07 1.92 11.18 84.69 0.95 2.87 16 7 N -0.52 -18.26 10.27 -183.88 -1.89 -20.15 16 8 C 0.12 4.02 6.23 42.54 0.27 4.29 16 9 C 0.12 4.71 5.35 85.56 0.46 5.17 16 10 N -0.66 -28.45 4.58 -499.48 -2.29 -30.74 16 11 C 0.22 11.39 1.97 44.17 0.09 11.48 16 12 H 0.00 0.22 7.83 -2.39 -0.02 0.20 16 13 C -0.56 -31.61 8.39 25.60 0.21 -31.39 16 14 H 0.04 2.43 7.71 -2.91 -0.02 2.41 16 15 C 0.02 1.30 5.29 84.66 0.45 1.74 16 16 N -0.91 -52.50 11.29 21.45 0.24 -52.26 16 17 Si 0.95 44.96 29.54 68.60 2.03 46.98 16 18 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 C -0.10 -4.84 5.45 30.59 0.17 -4.68 16 22 C -0.13 -5.17 9.86 71.98 0.71 -4.46 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.99 4.95 -2.39 -0.01 1.98 16 26 H 0.09 1.63 8.06 -2.39 -0.02 1.61 16 27 H 0.06 1.71 6.14 -2.39 -0.01 1.69 16 28 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 29 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.17 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.08 3.19 5.82 -2.39 -0.01 3.18 16 32 H 0.01 0.51 7.98 -2.39 -0.02 0.49 16 33 H 0.32 14.88 8.29 -89.69 -0.74 14.14 16 34 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 35 H 0.06 3.35 5.93 -2.39 -0.01 3.33 16 36 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 2.50 5.72 -2.39 -0.01 2.48 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -63.93 312.89 2.90 -61.04 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.29 Total: 22.65 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 4.52 Total: -27.52 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -3.94 Total: -103.15 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.93 2.90 -61.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134678234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.287 kcal (2) G-P(sol) polarization free energy of solvation -63.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds