Wall clock time and date at job start Mon Mar 30 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30750 * 125.61704 * 2 1 4 4 C 1.33580 * 109.14679 * 179.97438 * 3 2 1 5 5 C 1.35033 * 107.97773 * 0.05098 * 4 3 2 6 6 N 1.35314 * 125.61156 * 180.02562 * 2 1 3 7 7 C 1.46499 * 126.49814 * 359.96442 * 6 2 1 8 8 C 1.52997 * 109.47034 * 269.99882 * 7 6 2 9 9 C 1.53002 * 109.47182 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47049 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00400 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99671 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00193 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99927 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47125 * 89.99879 * 14 12 10 16 16 H 1.48495 * 109.47147 * 210.00431 * 14 12 10 17 17 H 1.48499 * 109.46997 * 329.99922 * 14 12 10 18 18 C 1.50653 * 124.45496 * 179.83125 * 5 4 3 19 19 C 1.53399 * 108.38069 * 343.59520 * 18 5 4 20 20 C 1.53224 * 109.45030 * 49.65938 * 19 18 5 21 21 C 1.50860 * 128.03470 * 180.02562 * 4 3 2 22 22 H 1.09002 * 109.46627 * 269.99959 * 1 2 3 23 23 H 1.09006 * 109.46719 * 29.99251 * 1 2 3 24 24 H 1.08999 * 109.47284 * 149.99370 * 1 2 3 25 25 H 1.08999 * 109.47050 * 30.00442 * 7 6 2 26 26 H 1.09002 * 109.46930 * 150.00509 * 7 6 2 27 27 H 1.08999 * 109.47659 * 300.00187 * 8 7 6 28 28 H 1.09002 * 109.46750 * 60.00517 * 8 7 6 29 29 H 1.09008 * 109.46877 * 300.00369 * 9 8 7 30 30 H 1.08996 * 109.47229 * 60.00180 * 9 8 7 31 31 H 0.97000 * 120.00059 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.67752 * 103.31779 * 18 5 4 33 33 H 1.08998 * 109.68255 * 223.87132 * 18 5 4 34 34 H 1.09007 * 109.46891 * 169.63334 * 19 18 5 35 35 H 1.08996 * 109.47654 * 289.64049 * 19 18 5 36 36 H 1.09000 * 109.50365 * 169.96531 * 20 19 18 37 37 H 1.09001 * 109.47386 * 49.97711 * 20 19 18 38 38 H 1.09002 * 109.67831 * 283.05730 * 21 4 3 39 39 H 1.08995 * 109.67421 * 43.56025 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2685 1.0629 0.0000 4 6 3.5495 0.6842 0.0006 5 6 3.5850 -0.6657 -0.0002 6 7 2.2950 -1.1001 -0.0005 7 6 1.8449 -2.4942 -0.0004 8 6 1.6890 -2.9797 1.4421 9 6 1.2196 -4.4359 1.4423 10 6 1.0655 -4.9138 2.8632 11 1 1.2811 -4.2460 3.6840 12 6 0.6491 -6.2039 3.1152 13 7 0.3869 -7.0173 2.1157 14 14 0.4573 -6.7961 4.8764 15 1 -0.9259 -6.5231 5.3426 16 1 0.7218 -8.2560 4.9393 17 1 1.4236 -6.0801 5.7474 18 6 4.8492 -1.4850 -0.0036 19 6 6.0137 -0.5760 -0.4170 20 6 5.9815 0.7069 0.4202 21 6 4.7777 1.5601 0.0013 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5139 25 1 0.8862 -2.5666 -0.5138 26 1 2.5801 -3.1133 -0.5146 27 1 2.6478 -2.9074 1.9555 28 1 0.9539 -2.3606 1.9563 29 1 0.2609 -4.5086 0.9287 30 1 1.9550 -5.0548 0.9282 31 1 0.0943 -7.9250 2.2930 32 1 5.0310 -1.8836 0.9945 33 1 4.7533 -2.3052 -0.7150 34 1 6.9573 -1.0955 -0.2493 35 1 5.9204 -0.3236 -1.4732 36 1 6.9001 1.2706 0.2577 37 1 5.8954 0.4499 1.4759 38 1 4.9424 1.9622 -0.9984 39 1 4.6443 2.3786 0.7086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160708601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:15 Heat of formation + Delta-G solvation = 18.072275 kcal Electronic energy + Delta-G solvation = -18040.074061 eV Core-core repulsion = 15367.866387 eV Total energy + Delta-G solvation = -2672.207674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.08615 -36.74937 -35.28593 -33.21786 -31.44051 -30.96167 -29.76219 -27.04381 -26.76577 -23.73596 -22.40913 -21.87389 -20.61678 -19.59566 -18.72677 -16.69588 -16.03544 -15.54308 -14.79952 -14.52154 -14.33255 -13.96307 -13.82624 -13.41823 -13.14977 -12.79798 -12.55490 -12.33443 -12.19796 -12.18985 -11.60106 -11.53356 -11.03725 -10.93859 -10.87995 -10.85073 -10.76571 -10.62786 -9.95380 -9.74898 -9.52149 -9.33227 -8.95253 -8.45869 -7.69800 -6.10745 -4.13802 2.31243 3.09477 3.26138 3.32585 3.32791 3.36384 4.37949 4.51356 4.75525 4.86515 4.88600 5.08378 5.22388 5.25837 5.31307 5.37989 5.48071 5.60111 5.62941 5.72006 5.74856 5.78125 5.81712 5.89400 5.97850 6.00334 6.06302 6.25968 6.31306 6.39599 6.54108 6.80030 6.83327 7.08852 7.49729 7.54648 7.60314 7.86828 8.28506 8.41667 8.92120 9.51259 11.00468 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.004930 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.670651 B = 5678.398587 C = 6200.272789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.195 3.805 3 N -0.492 5.492 4 C -0.009 4.009 5 C -0.024 4.024 6 N -0.435 5.435 7 C 0.098 3.902 8 C -0.120 4.120 9 C 0.026 3.974 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.043 4.043 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.028 4.028 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.495 12.420 -6.179 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 N -0.211 5.211 4 C -0.140 4.140 5 C -0.141 4.141 6 N -0.116 5.116 7 C -0.023 4.023 8 C -0.158 4.158 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.081 4.081 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.066 4.066 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.080 12.881 -6.229 15.964 hybrid contribution -0.004 -1.409 0.978 1.715 sum 7.076 11.471 -5.251 14.465 Atomic orbital electron populations 1.20136 0.85238 1.03444 1.03513 1.23186 0.95435 0.81176 1.06810 1.69855 1.01652 1.28544 1.21051 1.20348 0.92761 0.91088 1.09754 1.20859 0.85908 0.95234 1.12090 1.45241 1.05671 1.08118 1.52558 1.22252 1.01191 0.77520 1.01377 1.22006 1.01427 1.00676 0.91723 1.19045 0.96512 0.87976 0.97670 1.21163 1.45490 0.97261 0.92193 0.92666 1.25003 0.95263 0.96797 0.97192 1.69948 1.45952 1.06717 1.30734 0.86574 0.78553 0.77932 0.84869 1.20551 1.21116 1.19849 1.20065 0.89177 0.96538 1.02320 1.21546 0.97311 0.95867 1.00174 1.21617 0.97538 0.96100 1.00324 1.19842 0.89197 0.96086 1.01490 0.90258 0.89754 0.90832 0.89258 0.89551 0.92683 0.92567 0.96277 0.96332 0.92861 0.90403 0.91039 0.91195 0.91667 0.91409 0.91604 0.91269 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.19 36.01 0.37 -0.49 16 2 C 0.19 3.27 7.91 -154.96 -1.23 2.04 16 3 N -0.49 -8.81 11.25 -6.94 -0.08 -8.89 16 4 C -0.01 -0.15 6.98 -82.89 -0.58 -0.72 16 5 C -0.02 -0.39 6.73 -81.85 -0.55 -0.94 16 6 N -0.44 -7.28 2.74 -109.34 -0.30 -7.58 16 7 C 0.10 1.61 5.82 -4.04 -0.02 1.59 16 8 C -0.12 -2.38 5.48 -26.73 -0.15 -2.52 16 9 C 0.03 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 14 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 C -0.04 -0.56 5.99 -27.70 -0.17 -0.72 16 19 C -0.11 -1.15 5.91 -26.41 -0.16 -1.31 16 20 C -0.12 -1.22 5.91 -26.42 -0.16 -1.38 16 21 C -0.03 -0.35 6.30 -27.61 -0.17 -0.52 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.07 0.88 7.08 -51.93 -0.37 0.51 16 25 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 26 H 0.09 1.35 7.75 -51.93 -0.40 0.94 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 34 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 316.51 15.07 4.77 4.77 Total: -1.00 -31.26 316.51 -9.83 -41.10 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.58 Total: -2.64 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.36 Total: -17.65 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.36 Total: -41.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.26 -9.83 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160708601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.169 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds