Wall clock time and date at job start Mon Mar 30 2020 05:51:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.30750 * 125.61704 * 2 1
4 4 C 1.33580 * 109.14679 * 179.97438 * 3 2 1
5 5 C 1.35033 * 107.97773 * 0.05098 * 4 3 2
6 6 N 1.35314 * 125.61156 * 180.02562 * 2 1 3
7 7 C 1.46499 * 126.49814 * 359.96442 * 6 2 1
8 8 C 1.52997 * 109.47034 * 269.99882 * 7 6 2
9 9 C 1.53002 * 109.47182 * 180.02562 * 8 7 6
10 10 C 1.50700 * 109.47049 * 180.02562 * 9 8 7
11 11 H 1.07997 * 120.00400 * 359.97438 * 10 9 8
12 12 C 1.37880 * 119.99671 * 179.97438 * 10 9 8
13 13 N 1.31509 * 120.00193 * 0.02562 * 12 10 9
14 14 Si 1.86803 * 119.99927 * 180.02562 * 12 10 9
15 15 H 1.48499 * 109.47125 * 89.99879 * 14 12 10
16 16 H 1.48495 * 109.47147 * 210.00431 * 14 12 10
17 17 H 1.48499 * 109.46997 * 329.99922 * 14 12 10
18 18 C 1.50653 * 124.45496 * 179.83125 * 5 4 3
19 19 C 1.53399 * 108.38069 * 343.59520 * 18 5 4
20 20 C 1.53224 * 109.45030 * 49.65938 * 19 18 5
21 21 C 1.50860 * 128.03470 * 180.02562 * 4 3 2
22 22 H 1.09002 * 109.46627 * 269.99959 * 1 2 3
23 23 H 1.09006 * 109.46719 * 29.99251 * 1 2 3
24 24 H 1.08999 * 109.47284 * 149.99370 * 1 2 3
25 25 H 1.08999 * 109.47050 * 30.00442 * 7 6 2
26 26 H 1.09002 * 109.46930 * 150.00509 * 7 6 2
27 27 H 1.08999 * 109.47659 * 300.00187 * 8 7 6
28 28 H 1.09002 * 109.46750 * 60.00517 * 8 7 6
29 29 H 1.09008 * 109.46877 * 300.00369 * 9 8 7
30 30 H 1.08996 * 109.47229 * 60.00180 * 9 8 7
31 31 H 0.97000 * 120.00059 * 179.97438 * 13 12 10
32 32 H 1.08999 * 109.67752 * 103.31779 * 18 5 4
33 33 H 1.08998 * 109.68255 * 223.87132 * 18 5 4
34 34 H 1.09007 * 109.46891 * 169.63334 * 19 18 5
35 35 H 1.08996 * 109.47654 * 289.64049 * 19 18 5
36 36 H 1.09000 * 109.50365 * 169.96531 * 20 19 18
37 37 H 1.09001 * 109.47386 * 49.97711 * 20 19 18
38 38 H 1.09002 * 109.67831 * 283.05730 * 21 4 3
39 39 H 1.08995 * 109.67421 * 43.56025 * 21 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2685 1.0629 0.0000
4 6 3.5495 0.6842 0.0006
5 6 3.5850 -0.6657 -0.0002
6 7 2.2950 -1.1001 -0.0005
7 6 1.8449 -2.4942 -0.0004
8 6 1.6890 -2.9797 1.4421
9 6 1.2196 -4.4359 1.4423
10 6 1.0655 -4.9138 2.8632
11 1 1.2811 -4.2460 3.6840
12 6 0.6491 -6.2039 3.1152
13 7 0.3869 -7.0173 2.1157
14 14 0.4573 -6.7961 4.8764
15 1 -0.9259 -6.5231 5.3426
16 1 0.7218 -8.2560 4.9393
17 1 1.4236 -6.0801 5.7474
18 6 4.8492 -1.4850 -0.0036
19 6 6.0137 -0.5760 -0.4170
20 6 5.9815 0.7069 0.4202
21 6 4.7777 1.5601 0.0013
22 1 -0.3633 0.0000 1.0277
23 1 -0.3633 0.8901 -0.5138
24 1 -0.3634 -0.8899 -0.5139
25 1 0.8862 -2.5666 -0.5138
26 1 2.5801 -3.1133 -0.5146
27 1 2.6478 -2.9074 1.9555
28 1 0.9539 -2.3606 1.9563
29 1 0.2609 -4.5086 0.9287
30 1 1.9550 -5.0548 0.9282
31 1 0.0943 -7.9250 2.2930
32 1 5.0310 -1.8836 0.9945
33 1 4.7533 -2.3052 -0.7150
34 1 6.9573 -1.0955 -0.2493
35 1 5.9204 -0.3236 -1.4732
36 1 6.9001 1.2706 0.2577
37 1 5.8954 0.4499 1.4759
38 1 4.9424 1.9622 -0.9984
39 1 4.6443 2.3786 0.7086
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000160708601.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:51:15
Heat of formation + Delta-G solvation = 18.072275 kcal
Electronic energy + Delta-G solvation = -18040.074061 eV
Core-core repulsion = 15367.866387 eV
Total energy + Delta-G solvation = -2672.207674 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 248.158 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.08615 -36.74937 -35.28593 -33.21786 -31.44051 -30.96167 -29.76219 -27.04381
-26.76577 -23.73596 -22.40913 -21.87389 -20.61678 -19.59566 -18.72677 -16.69588
-16.03544 -15.54308 -14.79952 -14.52154 -14.33255 -13.96307 -13.82624 -13.41823
-13.14977 -12.79798 -12.55490 -12.33443 -12.19796 -12.18985 -11.60106 -11.53356
-11.03725 -10.93859 -10.87995 -10.85073 -10.76571 -10.62786 -9.95380 -9.74898
-9.52149 -9.33227 -8.95253 -8.45869 -7.69800 -6.10745 -4.13802 2.31243
3.09477 3.26138 3.32585 3.32791 3.36384 4.37949 4.51356 4.75525
4.86515 4.88600 5.08378 5.22388 5.25837 5.31307 5.37989 5.48071
5.60111 5.62941 5.72006 5.74856 5.78125 5.81712 5.89400 5.97850
6.00334 6.06302 6.25968 6.31306 6.39599 6.54108 6.80030 6.83327
7.08852 7.49729 7.54648 7.60314 7.86828 8.28506 8.41667 8.92120
9.51259 11.00468
Molecular weight = 248.16amu
Principal moments of inertia in cm(-1)
A = 0.026848 B = 0.004930 C = 0.004515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.670651 B = 5678.398587 C = 6200.272789
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 C 0.195 3.805
3 N -0.492 5.492
4 C -0.009 4.009
5 C -0.024 4.024
6 N -0.435 5.435
7 C 0.098 3.902
8 C -0.120 4.120
9 C 0.026 3.974
10 C -0.523 4.523
11 H 0.055 0.945
12 C 0.059 3.941
13 N -0.895 5.895
14 Si 0.893 3.107
15 H -0.279 1.279
16 H -0.285 1.285
17 H -0.274 1.274
18 C -0.043 4.043
19 C -0.111 4.111
20 C -0.118 4.118
21 C -0.028 4.028
22 H 0.079 0.921
23 H 0.084 0.916
24 H 0.073 0.927
25 H 0.089 0.911
26 H 0.086 0.914
27 H 0.054 0.946
28 H 0.056 0.944
29 H 0.019 0.981
30 H 0.018 0.982
31 H 0.262 0.738
32 H 0.078 0.922
33 H 0.071 0.929
34 H 0.069 0.931
35 H 0.065 0.935
36 H 0.067 0.933
37 H 0.065 0.935
38 H 0.069 0.931
39 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.495 12.420 -6.179 15.768
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.066 4.066
3 N -0.211 5.211
4 C -0.140 4.140
5 C -0.141 4.141
6 N -0.116 5.116
7 C -0.023 4.023
8 C -0.158 4.158
9 C -0.012 4.012
10 C -0.561 4.561
11 H 0.073 0.927
12 C -0.143 4.143
13 N -0.534 5.534
14 Si 0.721 3.279
15 H -0.206 1.206
16 H -0.211 1.211
17 H -0.198 1.198
18 C -0.081 4.081
19 C -0.149 4.149
20 C -0.156 4.156
21 C -0.066 4.066
22 H 0.097 0.903
23 H 0.102 0.898
24 H 0.092 0.908
25 H 0.107 0.893
26 H 0.104 0.896
27 H 0.073 0.927
28 H 0.074 0.926
29 H 0.037 0.963
30 H 0.037 0.963
31 H 0.071 0.929
32 H 0.096 0.904
33 H 0.090 0.910
34 H 0.088 0.912
35 H 0.083 0.917
36 H 0.086 0.914
37 H 0.084 0.916
38 H 0.087 0.913
39 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 7.080 12.881 -6.229 15.964
hybrid contribution -0.004 -1.409 0.978 1.715
sum 7.076 11.471 -5.251 14.465
Atomic orbital electron populations
1.20136 0.85238 1.03444 1.03513 1.23186 0.95435 0.81176 1.06810
1.69855 1.01652 1.28544 1.21051 1.20348 0.92761 0.91088 1.09754
1.20859 0.85908 0.95234 1.12090 1.45241 1.05671 1.08118 1.52558
1.22252 1.01191 0.77520 1.01377 1.22006 1.01427 1.00676 0.91723
1.19045 0.96512 0.87976 0.97670 1.21163 1.45490 0.97261 0.92193
0.92666 1.25003 0.95263 0.96797 0.97192 1.69948 1.45952 1.06717
1.30734 0.86574 0.78553 0.77932 0.84869 1.20551 1.21116 1.19849
1.20065 0.89177 0.96538 1.02320 1.21546 0.97311 0.95867 1.00174
1.21617 0.97538 0.96100 1.00324 1.19842 0.89197 0.96086 1.01490
0.90258 0.89754 0.90832 0.89258 0.89551 0.92683 0.92567 0.96277
0.96332 0.92861 0.90403 0.91039 0.91195 0.91667 0.91409 0.91604
0.91269 0.90979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.85 10.19 36.01 0.37 -0.49 16
2 C 0.19 3.27 7.91 -154.96 -1.23 2.04 16
3 N -0.49 -8.81 11.25 -6.94 -0.08 -8.89 16
4 C -0.01 -0.15 6.98 -82.89 -0.58 -0.72 16
5 C -0.02 -0.39 6.73 -81.85 -0.55 -0.94 16
6 N -0.44 -7.28 2.74 -109.34 -0.30 -7.58 16
7 C 0.10 1.61 5.82 -4.04 -0.02 1.59 16
8 C -0.12 -2.38 5.48 -26.73 -0.15 -2.52 16
9 C 0.03 0.62 4.97 -27.88 -0.14 0.49 16
10 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16
11 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16
12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
13 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16
14 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16
15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
18 C -0.04 -0.56 5.99 -27.70 -0.17 -0.72 16
19 C -0.11 -1.15 5.91 -26.41 -0.16 -1.31 16
20 C -0.12 -1.22 5.91 -26.42 -0.16 -1.38 16
21 C -0.03 -0.35 6.30 -27.61 -0.17 -0.52 16
22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
24 H 0.07 0.88 7.08 -51.93 -0.37 0.51 16
25 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16
26 H 0.09 1.35 7.75 -51.93 -0.40 0.94 16
27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
29 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16
30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16
32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
33 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16
34 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16
35 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16
36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16
38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
LS Contribution 316.51 15.07 4.77 4.77
Total: -1.00 -31.26 316.51 -9.83 -41.10
By element:
Atomic # 1 Polarization: 3.94 SS G_CDS: -6.58 Total: -2.64 kcal
Atomic # 6 Polarization: -14.29 SS G_CDS: -3.36 Total: -17.65 kcal
Atomic # 7 Polarization: -42.18 SS G_CDS: 0.36 Total: -41.82 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Total LS contribution 4.77 Total: 4.77 kcal
Total: -31.26 -9.83 -41.10 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000160708601.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.169 kcal
(2) G-P(sol) polarization free energy of solvation -31.263 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.905 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds