Wall clock time and date at job start Mon Mar 30 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30750 * 125.61704 * 2 1 4 4 C 1.33580 * 109.14679 * 179.97438 * 3 2 1 5 5 C 1.35033 * 107.97773 * 0.05098 * 4 3 2 6 6 N 1.35314 * 125.61156 * 180.02562 * 2 1 3 7 7 C 1.46499 * 126.49814 * 359.96442 * 6 2 1 8 8 C 1.52997 * 109.47034 * 269.99882 * 7 6 2 9 9 C 1.53002 * 109.47182 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47049 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00400 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99671 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00193 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99927 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47125 * 89.99879 * 14 12 10 16 16 H 1.48495 * 109.47147 * 210.00431 * 14 12 10 17 17 H 1.48499 * 109.46997 * 329.99922 * 14 12 10 18 18 C 1.50653 * 124.45496 * 179.83125 * 5 4 3 19 19 C 1.53399 * 108.38069 * 343.59520 * 18 5 4 20 20 C 1.53224 * 109.45030 * 49.65938 * 19 18 5 21 21 C 1.50860 * 128.03470 * 180.02562 * 4 3 2 22 22 H 1.09002 * 109.46627 * 269.99959 * 1 2 3 23 23 H 1.09006 * 109.46719 * 29.99251 * 1 2 3 24 24 H 1.08999 * 109.47284 * 149.99370 * 1 2 3 25 25 H 1.08999 * 109.47050 * 30.00442 * 7 6 2 26 26 H 1.09002 * 109.46930 * 150.00509 * 7 6 2 27 27 H 1.08999 * 109.47659 * 300.00187 * 8 7 6 28 28 H 1.09002 * 109.46750 * 60.00517 * 8 7 6 29 29 H 1.09008 * 109.46877 * 300.00369 * 9 8 7 30 30 H 1.08996 * 109.47229 * 60.00180 * 9 8 7 31 31 H 0.97000 * 120.00059 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.67752 * 103.31779 * 18 5 4 33 33 H 1.08998 * 109.68255 * 223.87132 * 18 5 4 34 34 H 1.09007 * 109.46891 * 169.63334 * 19 18 5 35 35 H 1.08996 * 109.47654 * 289.64049 * 19 18 5 36 36 H 1.09000 * 109.50365 * 169.96531 * 20 19 18 37 37 H 1.09001 * 109.47386 * 49.97711 * 20 19 18 38 38 H 1.09002 * 109.67831 * 283.05730 * 21 4 3 39 39 H 1.08995 * 109.67421 * 43.56025 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2685 1.0629 0.0000 4 6 3.5495 0.6842 0.0006 5 6 3.5850 -0.6657 -0.0002 6 7 2.2950 -1.1001 -0.0005 7 6 1.8449 -2.4942 -0.0004 8 6 1.6890 -2.9797 1.4421 9 6 1.2196 -4.4359 1.4423 10 6 1.0655 -4.9138 2.8632 11 1 1.2811 -4.2460 3.6840 12 6 0.6491 -6.2039 3.1152 13 7 0.3869 -7.0173 2.1157 14 14 0.4573 -6.7961 4.8764 15 1 -0.9259 -6.5231 5.3426 16 1 0.7218 -8.2560 4.9393 17 1 1.4236 -6.0801 5.7474 18 6 4.8492 -1.4850 -0.0036 19 6 6.0137 -0.5760 -0.4170 20 6 5.9815 0.7069 0.4202 21 6 4.7777 1.5601 0.0013 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5139 25 1 0.8862 -2.5666 -0.5138 26 1 2.5801 -3.1133 -0.5146 27 1 2.6478 -2.9074 1.9555 28 1 0.9539 -2.3606 1.9563 29 1 0.2609 -4.5086 0.9287 30 1 1.9550 -5.0548 0.9282 31 1 0.0943 -7.9250 2.2930 32 1 5.0310 -1.8836 0.9945 33 1 4.7533 -2.3052 -0.7150 34 1 6.9573 -1.0955 -0.2493 35 1 5.9204 -0.3236 -1.4732 36 1 6.9001 1.2706 0.2577 37 1 5.8954 0.4499 1.4759 38 1 4.9424 1.9622 -0.9984 39 1 4.6443 2.3786 0.7086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160708601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:14 Heat of formation + Delta-G solvation = 2.362750 kcal Electronic energy + Delta-G solvation = -18040.755278 eV Core-core repulsion = 15367.866387 eV Total energy + Delta-G solvation = -2672.888891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.30483 -37.77151 -36.79833 -35.03983 -33.02420 -32.09650 -30.92949 -28.56277 -28.00741 -25.46081 -23.52942 -22.91477 -22.34676 -20.83695 -19.83240 -18.57549 -17.48207 -16.77447 -16.50321 -16.11029 -15.53921 -14.99981 -14.78679 -14.62402 -14.46199 -14.26099 -13.99026 -13.63502 -13.38930 -13.31462 -13.18063 -12.94200 -12.72593 -12.56263 -12.39857 -11.86551 -11.78759 -11.70695 -11.66954 -11.52074 -11.33859 -10.75776 -10.58905 -10.36490 -8.89896 -8.24208 -6.34744 1.07042 1.38968 1.39201 1.50179 1.84953 2.09086 2.38597 3.09884 3.44868 3.65169 3.72599 3.98452 4.00135 4.07483 4.23763 4.26639 4.34064 4.39203 4.58961 4.64289 4.66815 4.70193 4.79017 4.82283 4.87605 5.00624 5.04010 5.05730 5.13681 5.20739 5.34038 5.43891 5.46744 5.54687 5.65729 5.77697 5.92755 6.17441 6.32148 6.79996 7.17239 7.34713 8.87089 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.004930 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.670651 B = 5678.398587 C = 6200.272789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.181 3.819 3 N -0.520 5.520 4 C -0.026 4.026 5 C -0.039 4.039 6 N -0.444 5.444 7 C 0.109 3.891 8 C -0.101 4.101 9 C 0.031 3.969 10 C -0.546 4.546 11 H 0.053 0.947 12 C 0.007 3.993 13 N -0.928 5.928 14 Si 0.959 3.041 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.045 4.045 19 C -0.106 4.106 20 C -0.113 4.113 21 C -0.029 4.029 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.354 12.854 -5.957 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 N -0.240 5.240 4 C -0.156 4.156 5 C -0.155 4.155 6 N -0.125 5.125 7 C -0.012 4.012 8 C -0.139 4.139 9 C -0.006 4.006 10 C -0.584 4.584 11 H 0.071 0.929 12 C -0.191 4.191 13 N -0.567 5.567 14 Si 0.784 3.216 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.083 4.083 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.067 4.067 22 H 0.099 0.901 23 H 0.116 0.884 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.951 13.334 -6.009 16.647 hybrid contribution -0.282 -1.510 0.893 1.777 sum 7.669 11.823 -5.116 14.992 Atomic orbital electron populations 1.20259 0.83266 1.04720 1.03996 1.23845 0.96768 0.81061 1.06335 1.69876 1.02702 1.29314 1.22085 1.21030 0.93336 0.91984 1.09264 1.21432 0.86503 0.95808 1.11742 1.45291 1.06196 1.07899 1.53085 1.22033 1.02356 0.77815 0.99025 1.21681 1.00403 0.97740 0.94097 1.18897 0.95330 0.90485 0.95910 1.21583 1.45520 0.97698 0.93577 0.92893 1.25851 0.94843 0.96984 1.01442 1.70053 1.46680 1.07128 1.32885 0.85532 0.78792 0.77505 0.79761 1.19759 1.20510 1.19224 1.20209 0.88996 0.96972 1.02147 1.21558 0.97030 0.95488 1.00274 1.21613 0.97702 0.96079 0.99646 1.19992 0.88585 0.95944 1.02171 0.90065 0.88350 0.89700 0.87867 0.88659 0.93551 0.93098 0.97720 0.97981 0.92611 0.91040 0.90681 0.88908 0.91266 0.88525 0.92511 0.90228 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.63 10.19 71.24 0.73 -0.90 16 2 C 0.18 5.97 7.91 137.97 1.09 7.06 16 3 N -0.52 -18.46 11.25 -175.88 -1.98 -20.44 16 4 C -0.03 -0.84 6.98 41.61 0.29 -0.55 16 5 C -0.04 -1.22 6.73 41.14 0.28 -0.95 16 6 N -0.44 -14.59 2.74 -499.83 -1.37 -15.96 16 7 C 0.11 3.53 5.82 86.38 0.50 4.03 16 8 C -0.10 -4.00 5.48 30.59 0.17 -3.83 16 9 C 0.03 1.56 4.97 29.85 0.15 1.70 16 10 C -0.55 -30.24 9.11 25.60 0.23 -30.01 16 11 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 12 C 0.01 0.41 5.46 84.66 0.46 0.87 16 13 N -0.93 -54.37 13.29 21.45 0.28 -54.08 16 14 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 C -0.04 -1.12 5.99 29.97 0.18 -0.94 16 19 C -0.11 -1.95 5.91 30.80 0.18 -1.77 16 20 C -0.11 -2.08 5.91 30.79 0.18 -1.90 16 21 C -0.03 -0.68 6.30 30.02 0.19 -0.49 16 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 24 H 0.08 1.93 7.08 -2.39 -0.02 1.91 16 25 H 0.10 3.04 7.06 -2.39 -0.02 3.02 16 26 H 0.10 2.91 7.75 -2.39 -0.02 2.89 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.79 7.88 -2.39 -0.02 1.77 16 34 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -66.53 316.51 4.60 -61.93 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.00 Total: 10.82 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 4.63 Total: -27.66 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -3.06 Total: -90.49 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -66.53 4.60 -61.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160708601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.291 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds