Wall clock time and date at job start Mon Mar 30 2020 06:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47380 * 2 1 4 4 C 1.52995 * 109.47053 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47053 * 180.02562 * 4 3 2 6 6 C 1.46493 * 119.99675 * 269.99621 * 5 4 3 7 7 C 1.39846 * 119.99957 * 89.99642 * 5 4 3 8 8 C 1.39608 * 119.84184 * 0.02562 * 7 5 4 9 9 C 1.38058 * 120.55013 * 180.02562 * 8 7 5 10 10 C 1.38733 * 120.21785 * 0.25424 * 9 8 7 11 11 N 1.38872 * 120.16201 * 179.74774 * 10 9 8 12 12 C 1.41556 * 119.67562 * 359.52232 * 10 9 8 13 13 C 1.41039 * 120.26894 * 180.20681 * 12 10 9 14 14 H 1.08001 * 119.99638 * 333.96246 * 13 12 10 15 15 C 1.39883 * 120.00195 * 153.96000 * 13 12 10 16 16 N 1.30899 * 119.99956 * 343.94081 * 15 13 12 17 17 Si 1.86796 * 120.00037 * 163.93834 * 15 13 12 18 18 H 1.48500 * 109.47275 * 59.99945 * 17 15 13 19 19 H 1.48499 * 109.47354 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47033 * 300.00132 * 17 15 13 21 21 C 1.38007 * 119.84226 * 180.02562 * 7 5 4 22 22 H 1.08998 * 109.46488 * 60.00118 * 1 2 3 23 23 H 1.08995 * 109.47346 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46789 * 300.00366 * 1 2 3 25 25 H 1.09001 * 109.47280 * 239.99596 * 2 1 3 26 26 H 1.09002 * 109.46974 * 119.99910 * 2 1 3 27 27 H 1.08994 * 109.46869 * 59.99604 * 3 2 1 28 28 H 1.09002 * 109.46994 * 299.99898 * 3 2 1 29 29 H 1.09001 * 109.47558 * 59.99625 * 4 3 2 30 30 H 1.09002 * 109.47022 * 299.99739 * 4 3 2 31 31 H 1.08993 * 109.47344 * 269.99960 * 6 5 4 32 32 H 1.09000 * 109.47274 * 30.00291 * 6 5 4 33 33 H 1.09005 * 109.46775 * 149.99766 * 6 5 4 34 34 H 1.07997 * 119.72520 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.88677 * 179.97438 * 9 8 7 36 36 H 0.96997 * 119.99642 * 353.92268 * 11 10 9 37 37 H 0.96998 * 120.00405 * 173.92254 * 11 10 9 38 38 H 0.97003 * 120.00018 * 185.03814 * 16 15 13 39 39 H 1.08004 * 120.10942 * 359.97438 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3022 3.5149 -1.2684 7 6 4.2920 3.4822 1.2114 8 6 4.0591 2.8200 2.4182 9 6 4.2843 3.4563 3.6225 10 6 4.7407 4.7662 3.6456 11 7 4.9618 5.4069 4.8577 12 6 4.9845 5.4449 2.4275 13 6 5.4528 6.7753 2.4363 14 1 5.2400 7.4170 3.2785 15 6 6.1928 7.2635 1.3543 16 7 6.7191 6.4307 0.4924 17 14 6.4299 9.1039 1.1394 18 1 7.1271 9.6554 2.3289 19 1 7.2448 9.3595 -0.0754 20 1 5.1056 9.7598 0.9935 21 6 4.7516 4.7835 1.2082 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.9331 0.9286 -0.8908 30 1 3.9337 0.9284 0.8891 31 1 5.3314 3.3437 -1.5836 32 1 3.6211 3.1312 -2.0280 33 1 4.1352 4.5841 -1.1374 34 1 3.6991 1.8019 2.4096 35 1 4.1001 2.9341 4.5498 36 1 4.7144 4.9716 5.6884 37 1 5.3635 6.2896 4.8736 38 1 7.2926 6.7636 -0.2156 39 1 4.9310 5.2924 0.2726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166372686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:25 Heat of formation + Delta-G solvation = 13.976229 kcal Electronic energy + Delta-G solvation = -18123.422828 eV Core-core repulsion = 15451.037536 eV Total energy + Delta-G solvation = -2672.385292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.23396 -36.36723 -34.31911 -33.44409 -31.93196 -29.70675 -28.85010 -26.97095 -25.61837 -24.21222 -22.28374 -20.95449 -20.71894 -19.07196 -17.09544 -16.14431 -15.50510 -15.17353 -14.77427 -14.54191 -14.26417 -14.03049 -13.14423 -13.00824 -12.53094 -12.43403 -12.30710 -11.88010 -11.66335 -11.41451 -11.22193 -11.09995 -11.03046 -10.95983 -10.88726 -10.74532 -10.31657 -10.27667 -9.77196 -9.54306 -9.18204 -9.01979 -7.54445 -7.18371 -6.56190 -5.46477 -4.03867 2.94285 3.13464 3.16508 3.34168 3.50328 4.04560 4.19555 4.82863 5.10195 5.14080 5.29134 5.45641 5.52202 5.82705 5.86301 5.86784 5.94291 5.95764 5.99924 6.12343 6.20822 6.34441 6.41069 6.46250 6.55132 6.61794 6.74975 7.15408 7.21829 7.36974 7.43207 7.77253 7.93962 7.95578 8.18560 8.50222 8.64081 8.88664 8.95936 9.04923 9.29285 9.37739 10.40691 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025301 B = 0.006071 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.397046 B = 4610.931934 C = 5371.143649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.136 3.864 5 N -0.644 5.644 6 C 0.110 3.890 7 C 0.177 3.823 8 C -0.254 4.254 9 C -0.152 4.152 10 C 0.083 3.917 11 N -0.889 5.889 12 C 0.094 3.906 13 C -0.465 4.465 14 H 0.071 0.929 15 C 0.077 3.923 16 N -0.801 5.801 17 Si 0.902 3.098 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.267 1.267 21 C -0.202 4.202 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.373 0.627 37 H 0.388 0.612 38 H 0.275 0.725 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -6.481 -2.061 8.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.011 3.989 5 N -0.360 5.360 6 C -0.034 4.034 7 C 0.080 3.920 8 C -0.278 4.278 9 C -0.176 4.176 10 C -0.018 4.018 11 N -0.432 5.432 12 C 0.089 3.911 13 C -0.497 4.497 14 H 0.089 0.911 15 C -0.139 4.139 16 N -0.428 5.428 17 Si 0.728 3.272 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.226 4.226 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.198 0.802 37 H 0.216 0.784 38 H 0.086 0.914 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.673 -6.551 -2.535 9.029 hybrid contribution 0.288 0.958 0.157 1.013 sum -5.385 -5.592 -2.378 8.120 Atomic orbital electron populations 1.21759 0.96241 1.00998 1.01789 1.21470 0.95578 0.97361 1.01574 1.22109 0.97482 0.95795 1.02429 1.21118 0.92440 0.84251 1.01045 1.46069 1.74564 1.12099 1.03297 1.21307 0.98690 0.98089 0.85291 1.17544 0.98165 0.92339 0.83923 1.19659 1.18083 0.99076 0.90967 1.19706 1.08358 0.93715 0.95801 1.17861 1.05728 0.91784 0.86446 1.41798 1.74950 1.22102 1.04355 1.16998 0.92323 0.92868 0.88921 1.19120 1.31049 0.96604 1.02886 0.91111 1.25754 0.94306 0.99183 0.94665 1.69854 1.23542 1.35806 1.13614 0.86479 0.78952 0.83553 0.78244 1.19412 1.20610 1.19159 1.20666 1.10111 0.93132 0.98737 0.93015 0.93210 0.92727 0.92464 0.92127 0.91416 0.92576 0.92804 0.91379 0.94862 0.93901 0.91554 0.89490 0.89821 0.80174 0.78375 0.91403 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.42 5.93 -26.73 -0.16 -1.58 16 3 C -0.14 -2.02 5.54 -26.73 -0.15 -2.17 16 4 C 0.14 2.23 5.15 -4.04 -0.02 2.21 16 5 N -0.64 -13.01 3.01 -179.63 -0.54 -13.55 16 6 C 0.11 2.03 10.18 59.84 0.61 2.64 16 7 C 0.18 4.23 6.55 -83.77 -0.55 3.69 16 8 C -0.25 -5.87 9.20 -39.14 -0.36 -6.23 16 9 C -0.15 -3.53 9.87 -39.46 -0.39 -3.92 16 10 C 0.08 2.03 6.79 -83.23 -0.56 1.47 16 11 N -0.89 -18.50 8.97 32.75 0.29 -18.21 16 12 C 0.09 2.53 5.57 -106.66 -0.59 1.94 16 13 C -0.47 -12.34 8.44 -37.91 -0.32 -12.66 16 14 H 0.07 1.79 6.78 -52.49 -0.36 1.43 16 15 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 16 N -0.80 -21.07 10.96 55.54 0.61 -20.46 16 17 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 C -0.20 -5.34 7.82 -38.75 -0.30 -5.64 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.78 8.07 -51.93 -0.42 0.37 16 30 H 0.07 1.15 6.18 -51.93 -0.32 0.83 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.07 1.33 6.18 -51.93 -0.32 1.01 16 34 H 0.09 1.82 6.11 -52.49 -0.32 1.50 16 35 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.37 6.58 8.84 -40.82 -0.36 6.21 16 37 H 0.39 7.93 7.11 -40.82 -0.29 7.64 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.12 3.34 4.27 -52.48 -0.22 3.12 16 LS Contribution 313.08 15.07 4.72 4.72 Total: -1.00 -28.41 313.08 -8.44 -36.86 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -5.97 Total: 16.23 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.52 Total: -19.63 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.36 Total: -52.22 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.41 -8.44 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166372686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.833 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds