Wall clock time and date at job start Mon Mar 30 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47380 * 2 1 4 4 C 1.52995 * 109.47053 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47053 * 180.02562 * 4 3 2 6 6 C 1.46493 * 119.99675 * 269.99621 * 5 4 3 7 7 C 1.39846 * 119.99957 * 89.99642 * 5 4 3 8 8 C 1.39608 * 119.84184 * 0.02562 * 7 5 4 9 9 C 1.38058 * 120.55013 * 180.02562 * 8 7 5 10 10 C 1.38733 * 120.21785 * 0.25424 * 9 8 7 11 11 N 1.38872 * 120.16201 * 179.74774 * 10 9 8 12 12 C 1.41556 * 119.67562 * 359.52232 * 10 9 8 13 13 C 1.41039 * 120.26894 * 180.20681 * 12 10 9 14 14 H 1.08001 * 119.99638 * 333.96246 * 13 12 10 15 15 C 1.39883 * 120.00195 * 153.96000 * 13 12 10 16 16 N 1.30899 * 119.99956 * 343.94081 * 15 13 12 17 17 Si 1.86796 * 120.00037 * 163.93834 * 15 13 12 18 18 H 1.48500 * 109.47275 * 59.99945 * 17 15 13 19 19 H 1.48499 * 109.47354 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47033 * 300.00132 * 17 15 13 21 21 C 1.38007 * 119.84226 * 180.02562 * 7 5 4 22 22 H 1.08998 * 109.46488 * 60.00118 * 1 2 3 23 23 H 1.08995 * 109.47346 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46789 * 300.00366 * 1 2 3 25 25 H 1.09001 * 109.47280 * 239.99596 * 2 1 3 26 26 H 1.09002 * 109.46974 * 119.99910 * 2 1 3 27 27 H 1.08994 * 109.46869 * 59.99604 * 3 2 1 28 28 H 1.09002 * 109.46994 * 299.99898 * 3 2 1 29 29 H 1.09001 * 109.47558 * 59.99625 * 4 3 2 30 30 H 1.09002 * 109.47022 * 299.99739 * 4 3 2 31 31 H 1.08993 * 109.47344 * 269.99960 * 6 5 4 32 32 H 1.09000 * 109.47274 * 30.00291 * 6 5 4 33 33 H 1.09005 * 109.46775 * 149.99766 * 6 5 4 34 34 H 1.07997 * 119.72520 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.88677 * 179.97438 * 9 8 7 36 36 H 0.96997 * 119.99642 * 353.92268 * 11 10 9 37 37 H 0.96998 * 120.00405 * 173.92254 * 11 10 9 38 38 H 0.97003 * 120.00018 * 185.03814 * 16 15 13 39 39 H 1.08004 * 120.10942 * 359.97438 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3022 3.5149 -1.2684 7 6 4.2920 3.4822 1.2114 8 6 4.0591 2.8200 2.4182 9 6 4.2843 3.4563 3.6225 10 6 4.7407 4.7662 3.6456 11 7 4.9618 5.4069 4.8577 12 6 4.9845 5.4449 2.4275 13 6 5.4528 6.7753 2.4363 14 1 5.2400 7.4170 3.2785 15 6 6.1928 7.2635 1.3543 16 7 6.7191 6.4307 0.4924 17 14 6.4299 9.1039 1.1394 18 1 7.1271 9.6554 2.3289 19 1 7.2448 9.3595 -0.0754 20 1 5.1056 9.7598 0.9935 21 6 4.7516 4.7835 1.2082 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.9331 0.9286 -0.8908 30 1 3.9337 0.9284 0.8891 31 1 5.3314 3.3437 -1.5836 32 1 3.6211 3.1312 -2.0280 33 1 4.1352 4.5841 -1.1374 34 1 3.6991 1.8019 2.4096 35 1 4.1001 2.9341 4.5498 36 1 4.7144 4.9716 5.6884 37 1 5.3635 6.2896 4.8736 38 1 7.2926 6.7636 -0.2156 39 1 4.9310 5.2924 0.2726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166372686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:24 Heat of formation + Delta-G solvation = -1.610190 kcal Electronic energy + Delta-G solvation = -18124.098706 eV Core-core repulsion = 15451.037536 eV Total energy + Delta-G solvation = -2673.061170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97000 -37.91428 -35.56600 -35.33605 -33.58017 -31.45800 -30.25568 -28.67771 -27.28663 -25.82451 -23.68113 -22.69466 -21.92117 -20.81618 -18.91385 -17.88110 -17.24051 -16.66403 -16.49917 -15.96470 -15.65976 -15.40857 -14.79029 -14.31757 -14.18313 -13.89833 -13.65401 -13.49068 -13.23757 -13.07607 -12.84730 -12.81621 -12.52594 -12.25557 -12.10484 -12.04307 -11.81991 -11.64480 -11.38902 -11.22481 -10.99502 -10.89702 -9.22252 -9.09469 -8.45791 -7.23815 -5.98935 1.14719 1.41165 1.50379 1.53487 1.66332 2.27434 2.68517 2.93028 3.78721 3.96324 4.05077 4.11234 4.30270 4.42338 4.44907 4.63451 4.66191 4.74315 4.87154 4.91657 4.95771 4.99526 5.02831 5.14347 5.26156 5.34178 5.38590 5.43156 5.48103 5.54924 5.64024 5.93117 6.10107 6.15627 6.32694 6.59587 6.90352 7.06152 7.11166 7.19716 7.48822 7.68415 8.52954 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025301 B = 0.006071 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.397046 B = 4610.931934 C = 5371.143649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.129 4.129 4 C 0.132 3.868 5 N -0.649 5.649 6 C 0.112 3.888 7 C 0.170 3.830 8 C -0.256 4.256 9 C -0.158 4.158 10 C 0.066 3.934 11 N -0.879 5.879 12 C 0.058 3.942 13 C -0.494 4.494 14 H 0.074 0.926 15 C 0.035 3.965 16 N -0.833 5.833 17 Si 0.974 3.026 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.266 1.266 21 C -0.228 4.228 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.390 0.610 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -7.444 -2.249 10.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.168 4.168 4 C 0.009 3.991 5 N -0.365 5.365 6 C -0.031 4.031 7 C 0.071 3.929 8 C -0.279 4.279 9 C -0.182 4.182 10 C -0.036 4.036 11 N -0.423 5.423 12 C 0.053 3.947 13 C -0.525 4.525 14 H 0.092 0.908 15 C -0.178 4.178 16 N -0.461 5.461 17 Si 0.796 3.204 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.191 1.191 21 C -0.253 4.253 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.217 0.783 37 H 0.217 0.783 38 H 0.089 0.911 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.335 -7.545 -2.710 10.218 hybrid contribution 0.450 1.136 0.211 1.240 sum -5.885 -6.409 -2.499 9.053 Atomic orbital electron populations 1.21752 0.95390 1.02065 1.01526 1.21437 0.96286 0.95212 1.02502 1.21981 0.95978 0.97660 1.01179 1.21357 0.93589 0.82171 1.01999 1.46301 1.74196 1.13429 1.02548 1.21315 0.99394 0.96848 0.85567 1.17694 0.97439 0.91911 0.85826 1.19970 1.17286 0.99995 0.90691 1.20059 1.07600 0.93436 0.97091 1.18048 1.05982 0.92506 0.87018 1.41666 1.74577 1.22057 1.04029 1.17404 0.93435 0.93722 0.90130 1.19378 1.32161 0.97077 1.03921 0.90844 1.26555 0.93630 1.03656 0.93973 1.69944 1.24160 1.37800 1.14187 0.85379 0.78799 0.77677 0.78508 1.18507 1.19873 1.19122 1.20691 1.11853 0.94515 0.98203 0.92796 0.91487 0.93547 0.90851 0.91873 0.93931 0.92577 0.90351 0.91833 0.95282 0.90292 0.93996 0.87286 0.87179 0.78255 0.78271 0.91061 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.91 71.98 0.71 -2.10 16 2 C -0.12 -2.40 5.93 30.60 0.18 -2.22 16 3 C -0.13 -3.52 5.54 30.59 0.17 -3.35 16 4 C 0.13 4.08 5.15 86.38 0.45 4.52 16 5 N -0.65 -25.90 3.01 -722.22 -2.18 -28.07 16 6 C 0.11 4.12 10.18 127.77 1.30 5.43 16 7 C 0.17 8.21 6.55 38.14 0.25 8.46 16 8 C -0.26 -11.65 9.20 22.56 0.21 -11.44 16 9 C -0.16 -7.23 9.87 22.35 0.22 -7.01 16 10 C 0.07 3.28 6.79 38.96 0.26 3.55 16 11 N -0.88 -36.22 8.97 -50.31 -0.45 -36.68 16 12 C 0.06 3.22 5.57 -21.18 -0.12 3.10 16 13 C -0.49 -26.88 8.44 23.36 0.20 -26.68 16 14 H 0.07 3.79 6.78 -2.91 -0.02 3.77 16 15 C 0.03 1.79 5.16 85.23 0.44 2.23 16 16 N -0.83 -45.11 10.96 21.82 0.24 -44.87 16 17 Si 0.97 39.62 29.59 68.60 2.03 41.65 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 21 C -0.23 -12.44 7.82 22.81 0.18 -12.27 16 22 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 30 H 0.06 2.02 6.18 -2.39 -0.01 2.01 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 33 H 0.04 1.73 6.18 -2.38 -0.01 1.72 16 34 H 0.11 4.39 6.11 -2.91 -0.02 4.37 16 35 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 36 H 0.39 13.25 8.84 -92.71 -0.82 12.43 16 37 H 0.39 15.91 7.11 -92.71 -0.66 15.25 16 38 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 39 H 0.11 6.10 4.27 -2.91 -0.01 6.09 16 Total: -1.00 -62.13 313.08 3.67 -58.47 By element: Atomic # 1 Polarization: 47.70 SS G_CDS: -0.42 Total: 47.27 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.45 Total: -37.78 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -2.39 Total: -109.62 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -62.13 3.67 -58.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166372686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.857 kcal (2) G-P(sol) polarization free energy of solvation -62.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds