Wall clock time and date at job start Mon Mar 30 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 C 1.53000 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47220 * 55.00363 * 4 3 2 6 6 C 1.53006 * 109.47026 * 174.99909 * 4 3 2 7 7 N 1.46494 * 109.47283 * 294.99579 * 4 3 2 8 8 C 1.39854 * 119.99950 * 154.99999 * 7 4 3 9 9 C 1.39602 * 119.83989 * 359.72563 * 8 7 4 10 10 C 1.38062 * 120.55049 * 179.75495 * 9 8 7 11 11 C 1.38735 * 120.21752 * 0.52429 * 10 9 8 12 12 N 1.38864 * 120.16255 * 179.71438 * 11 10 9 13 13 C 1.41561 * 119.67673 * 359.73863 * 11 10 9 14 14 C 1.41028 * 120.27080 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99994 * 25.56943 * 14 13 11 16 16 C 1.39885 * 120.00141 * 205.57012 * 14 13 11 17 17 N 1.30901 * 119.99806 * 15.34933 * 16 14 13 18 18 Si 1.86797 * 120.00253 * 195.34607 * 16 14 13 19 19 H 1.48499 * 109.47162 * 59.99672 * 18 16 14 20 20 H 1.48500 * 109.47301 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46898 * 300.00003 * 18 16 14 22 22 C 1.38009 * 119.84146 * 180.02562 * 8 7 4 23 23 H 1.08994 * 109.47208 * 300.00567 * 1 2 3 24 24 H 1.09003 * 109.46576 * 60.00429 * 1 2 3 25 25 H 1.08998 * 109.46761 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47198 * 120.00003 * 2 1 3 27 27 H 1.09006 * 109.47598 * 239.99424 * 2 1 3 28 28 H 1.09003 * 109.46974 * 299.99327 * 3 2 1 29 29 H 1.08994 * 109.47048 * 59.99922 * 3 2 1 30 30 H 1.09000 * 109.47184 * 59.99853 * 6 4 3 31 31 H 1.08995 * 109.47168 * 180.02562 * 6 4 3 32 32 H 1.09003 * 109.47163 * 300.00001 * 6 4 3 33 33 H 0.96991 * 120.00403 * 335.00685 * 7 4 3 34 34 H 1.08002 * 119.72516 * 0.02562 * 9 8 7 35 35 H 1.07996 * 119.89064 * 180.26304 * 10 9 8 36 36 H 0.97003 * 119.99736 * 180.02562 * 12 11 10 37 37 H 0.96999 * 120.00109 * 0.02562 * 12 11 10 38 38 H 0.97003 * 120.00156 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.11122 * 359.95043 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0802 2.8794 -0.1251 7 7 4.0578 0.8590 1.2527 8 6 5.3258 0.2710 1.3029 9 6 6.1215 0.2369 0.1564 10 6 7.3775 -0.3353 0.1906 11 6 7.8586 -0.8936 1.3660 12 7 9.1197 -1.4741 1.3977 13 6 7.0575 -0.8691 2.5329 14 6 7.5339 -1.4334 3.7343 15 1 8.5966 -1.5080 3.9118 16 6 6.6300 -1.8966 4.6962 17 7 5.3752 -2.0884 4.3765 18 14 7.2135 -2.2415 6.4368 19 1 7.7626 -0.9962 7.0308 20 1 6.0711 -2.7196 7.2563 21 1 8.2710 -3.2837 6.4070 22 6 5.7819 -0.2781 2.4841 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.7165 3.4690 0.7164 31 1 5.1701 2.8794 -0.1251 32 1 3.7172 3.3136 -1.0567 33 1 3.5014 0.8803 2.0469 34 1 5.7533 0.6656 -0.7640 35 1 7.9858 -0.3521 -0.7016 36 1 9.4535 -1.8641 2.2207 37 1 9.6667 -1.4897 0.5968 38 1 4.7484 -2.4100 5.0434 39 1 5.1619 -0.2535 3.3680 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166374866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:10 Heat of formation + Delta-G solvation = -14.724923 kcal Electronic energy + Delta-G solvation = -18069.800837 eV Core-core repulsion = 15396.170969 eV Total energy + Delta-G solvation = -2673.629868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.89031 -38.16800 -35.45945 -35.23140 -33.37133 -31.38733 -31.08627 -27.78738 -27.45102 -26.45756 -23.29722 -22.60457 -21.77634 -21.05679 -18.91761 -17.82259 -17.25618 -16.87920 -16.41007 -16.20294 -15.43691 -15.05403 -14.59198 -14.30909 -14.21942 -13.79059 -13.64984 -13.48520 -13.16489 -13.00589 -12.91200 -12.79710 -12.68414 -12.32051 -12.06770 -11.92474 -11.73687 -11.49560 -11.41949 -11.24508 -11.07351 -10.91186 -9.34920 -9.11242 -8.47210 -7.24638 -5.98193 1.15438 1.41072 1.50432 1.54682 1.69298 2.27927 2.93569 3.03990 3.79334 3.86803 3.99712 4.16203 4.18961 4.44420 4.60723 4.64585 4.72197 4.82236 4.88287 4.94836 4.95456 5.07177 5.12921 5.25483 5.29574 5.36682 5.40152 5.44506 5.50892 5.54390 5.71470 5.94075 6.10259 6.21785 6.33426 6.60177 6.99990 7.10530 7.18486 7.33498 7.51243 7.68883 8.52685 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.006526 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.698892 B = 4289.249610 C = 5240.401140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.152 3.848 5 H 0.060 0.940 6 C -0.159 4.159 7 N -0.751 5.751 8 C 0.180 3.820 9 C -0.258 4.258 10 C -0.158 4.158 11 C 0.065 3.935 12 N -0.880 5.880 13 C 0.060 3.940 14 C -0.493 4.493 15 H 0.073 0.927 16 C 0.033 3.967 17 N -0.833 5.833 18 Si 0.974 3.026 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.228 4.228 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.386 0.614 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.389 0.611 37 H 0.390 0.610 38 H 0.278 0.722 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 5.156 -6.039 9.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.151 4.151 4 C 0.047 3.953 5 H 0.078 0.922 6 C -0.218 4.218 7 N -0.384 5.384 8 C 0.079 3.921 9 C -0.282 4.282 10 C -0.183 4.183 11 C -0.036 4.036 12 N -0.424 5.424 13 C 0.055 3.945 14 C -0.524 4.524 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.461 5.461 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.253 4.253 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.219 0.781 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.217 0.783 37 H 0.217 0.783 38 H 0.088 0.912 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.998 5.156 -6.142 10.014 hybrid contribution 0.440 -0.560 1.204 1.399 sum -5.558 4.595 -4.938 8.740 Atomic orbital electron populations 1.21732 0.94552 1.01707 1.02274 1.21473 0.96601 0.96944 1.01149 1.21815 0.93027 0.96925 1.03343 1.20850 0.94098 0.93358 0.87021 0.92184 1.22223 1.00745 0.96722 1.02127 1.44519 1.15486 1.66456 1.11904 1.17600 0.86193 0.94605 0.93690 1.19937 0.96552 1.15014 0.96733 1.20055 0.97226 1.05287 0.95711 1.18036 0.89230 1.02543 0.93837 1.41672 1.16351 1.69796 1.14569 1.17365 0.92360 0.93013 0.91801 1.19364 0.94096 1.37352 1.01616 0.90927 1.26555 0.94584 0.93081 1.03759 1.69964 1.05036 1.35046 1.36008 0.85379 0.78599 0.79190 0.77181 1.19068 1.19971 1.18551 1.20500 0.99538 1.08849 0.96382 0.92603 0.91450 0.93018 0.94120 0.92846 0.88904 0.91493 0.92846 0.94295 0.90257 0.78134 0.87519 0.87347 0.78287 0.78276 0.91158 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.91 71.98 0.71 -2.24 16 2 C -0.12 -3.18 5.82 30.59 0.18 -3.00 16 3 C -0.11 -2.66 4.75 30.59 0.15 -2.51 16 4 C 0.15 4.55 2.27 44.99 0.10 4.65 16 5 H 0.06 1.93 6.45 -2.39 -0.02 1.92 16 6 C -0.16 -4.29 9.43 71.98 0.68 -3.62 16 7 N -0.75 -28.75 4.70 -318.97 -1.50 -30.25 16 8 C 0.18 8.50 6.63 38.14 0.25 8.75 16 9 C -0.26 -11.68 8.85 22.56 0.20 -11.48 16 10 C -0.16 -7.25 9.86 22.35 0.22 -7.03 16 11 C 0.07 3.23 6.79 38.97 0.26 3.50 16 12 N -0.88 -36.31 8.98 -50.31 -0.45 -36.76 16 13 C 0.06 3.30 5.58 -21.18 -0.12 3.18 16 14 C -0.49 -26.85 8.50 23.35 0.20 -26.65 16 15 H 0.07 3.74 6.67 -2.91 -0.02 3.72 16 16 C 0.03 1.70 5.18 85.23 0.44 2.14 16 17 N -0.83 -45.23 10.88 21.82 0.24 -44.99 16 18 Si 0.97 39.80 29.59 68.60 2.03 41.82 16 19 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 C -0.23 -12.35 8.50 22.81 0.19 -12.16 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 1.28 7.75 -2.39 -0.02 1.26 16 27 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.22 7.72 -2.39 -0.02 1.20 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.39 14.62 8.61 -92.71 -0.80 13.82 16 34 H 0.11 4.29 6.09 -2.91 -0.02 4.27 16 35 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.39 15.90 7.04 -92.71 -0.65 15.25 16 37 H 0.39 13.29 8.83 -92.71 -0.82 12.48 16 38 H 0.28 13.92 8.30 -92.71 -0.77 13.16 16 39 H 0.10 5.59 6.14 -2.91 -0.02 5.57 16 Total: -1.00 -61.12 314.35 2.58 -58.54 By element: Atomic # 1 Polarization: 59.30 SS G_CDS: -1.20 Total: 58.10 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 3.47 Total: -46.46 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -1.71 Total: -112.00 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -61.12 2.58 -58.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166374866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.811 kcal (2) G-P(sol) polarization free energy of solvation -61.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds