Wall clock time and date at job start Mon Mar 30 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46834 * 2 1 4 4 C 1.53000 * 109.46826 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46826 * 180.02562 * 4 3 2 6 6 N 1.46508 * 109.47263 * 179.97438 * 5 4 3 7 7 C 1.39849 * 120.00227 * 179.97438 * 6 5 4 8 8 C 1.39604 * 119.83976 * 0.30085 * 7 6 5 9 9 C 1.38053 * 120.55082 * 180.25613 * 8 7 6 10 10 C 1.38739 * 120.21987 * 359.44657 * 9 8 7 11 11 N 1.38866 * 120.16493 * 180.25768 * 10 9 8 12 12 C 1.41566 * 119.67109 * 0.27248 * 10 9 8 13 13 C 1.41024 * 120.26857 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99807 * 333.63198 * 13 12 10 15 15 C 1.39884 * 120.00054 * 153.62151 * 13 12 10 16 16 N 1.30895 * 120.00173 * 343.99519 * 15 13 12 17 17 Si 1.86803 * 119.99694 * 163.99075 * 15 13 12 18 18 H 1.48495 * 109.47046 * 60.00596 * 17 15 13 19 19 H 1.48502 * 109.46681 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47380 * 300.00153 * 17 15 13 21 21 C 1.37998 * 119.84044 * 180.02562 * 7 6 5 22 22 H 1.08995 * 109.47249 * 60.00019 * 1 2 3 23 23 H 1.09002 * 109.46499 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46867 * 299.99637 * 1 2 3 25 25 H 1.09002 * 109.47300 * 240.00619 * 2 1 3 26 26 H 1.08994 * 109.47762 * 119.99872 * 2 1 3 27 27 H 1.08998 * 109.47096 * 60.00503 * 3 2 1 28 28 H 1.09000 * 109.47514 * 300.00359 * 3 2 1 29 29 H 1.09002 * 109.47616 * 60.00431 * 4 3 2 30 30 H 1.08994 * 109.47455 * 299.99679 * 4 3 2 31 31 H 1.08998 * 109.47096 * 60.00122 * 5 4 3 32 32 H 1.09000 * 109.47514 * 299.99978 * 5 4 3 33 33 H 0.97005 * 119.99573 * 0.02562 * 6 5 4 34 34 H 1.08005 * 119.72575 * 359.97438 * 8 7 6 35 35 H 1.08001 * 119.89216 * 179.72573 * 9 8 7 36 36 H 0.97001 * 120.00257 * 359.97438 * 11 10 9 37 37 H 0.97001 * 119.99599 * 179.97438 * 11 10 9 38 38 H 0.97004 * 120.00145 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.11467 * 0.05242 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 7 5.5450 2.8852 0.0000 7 6 6.2442 4.0964 0.0000 8 6 5.5428 5.3034 0.0064 9 6 6.2181 6.5075 0.0011 10 6 7.6053 6.5301 0.0011 11 7 8.2834 7.7419 0.0012 12 6 8.3260 5.3116 0.0005 13 6 9.7362 5.3199 0.0010 14 1 10.2714 6.1614 -0.4137 15 6 10.4419 4.2384 0.5387 16 7 9.8303 3.3773 1.3119 17 14 12.2570 4.0231 0.1533 18 1 13.0082 5.2130 0.6276 19 1 12.7679 2.8090 0.8390 20 1 12.4376 3.8758 -1.3133 21 6 7.6242 4.0926 -0.0005 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8935 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9330 0.9289 -0.8909 30 1 3.9337 0.9287 0.8891 31 1 3.7169 3.3984 0.8904 32 1 3.7162 3.3995 -0.8895 33 1 6.0300 2.0451 -0.0008 34 1 4.4627 5.2951 0.0108 35 1 5.6647 7.4349 0.0017 36 1 7.7872 8.5754 0.0010 37 1 9.2533 7.7549 0.0015 38 1 10.3195 2.6271 1.6845 39 1 8.1635 3.1568 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166375456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:29 Heat of formation + Delta-G solvation = -21.413562 kcal Electronic energy + Delta-G solvation = -17371.692549 eV Core-core repulsion = 14697.772640 eV Total energy + Delta-G solvation = -2673.919909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.76471 -37.77827 -36.10610 -35.31738 -33.70113 -31.42591 -31.28004 -28.39525 -26.71116 -25.80896 -23.44483 -22.33332 -21.85064 -21.35873 -18.88968 -17.79101 -17.23918 -16.77545 -16.65690 -16.37284 -15.82706 -15.24480 -14.70824 -14.43872 -14.16046 -13.83098 -13.81766 -13.64004 -13.29839 -13.13867 -12.84965 -12.70232 -12.48258 -12.14157 -12.03349 -11.98425 -11.81227 -11.45135 -11.43070 -11.26611 -11.15982 -10.92124 -9.40497 -9.13731 -8.49229 -7.29891 -6.00262 1.13398 1.41520 1.50522 1.53211 1.66261 2.27868 2.90686 2.98597 3.77371 3.91817 3.95789 4.03957 4.20881 4.36373 4.47727 4.58215 4.65713 4.79011 4.84865 4.88105 4.95933 5.04301 5.16469 5.20459 5.24053 5.32248 5.35661 5.43925 5.45873 5.51392 5.68022 5.89302 6.06551 6.16872 6.28876 6.57147 6.97716 7.06313 7.13600 7.27755 7.47839 7.67389 8.51799 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.004502 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.811334 B = 6217.976312 C = 7189.897820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.112 4.112 4 C -0.120 4.120 5 C 0.138 3.862 6 N -0.763 5.763 7 C 0.170 3.830 8 C -0.260 4.260 9 C -0.158 4.158 10 C 0.069 3.931 11 N -0.879 5.879 12 C 0.061 3.939 13 C -0.494 4.494 14 H 0.075 0.925 15 C 0.033 3.967 16 N -0.834 5.834 17 Si 0.976 3.024 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.265 1.265 21 C -0.226 4.226 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.389 0.611 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.814 -4.269 -2.022 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.150 4.150 4 C -0.158 4.158 5 C 0.013 3.987 6 N -0.397 5.397 7 C 0.070 3.930 8 C -0.284 4.284 9 C -0.182 4.182 10 C -0.033 4.033 11 N -0.423 5.423 12 C 0.055 3.945 13 C -0.525 4.525 14 H 0.093 0.907 15 C -0.180 4.180 16 N -0.461 5.461 17 Si 0.798 3.202 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.190 1.190 21 C -0.251 4.251 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.222 0.778 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.218 0.782 37 H 0.218 0.782 38 H 0.089 0.911 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.014 -4.478 -1.870 12.036 hybrid contribution 1.265 -0.119 0.065 1.272 sum -9.749 -4.597 -1.805 10.929 Atomic orbital electron populations 1.21771 0.95128 1.02012 1.01998 1.21519 0.96461 0.96054 1.02097 1.21501 0.93266 0.97700 1.02503 1.21699 0.96873 0.94783 1.02416 1.21165 0.80229 0.97652 0.99619 1.44476 1.04901 1.04581 1.85719 1.17667 0.90862 0.86393 0.98090 1.19929 0.97538 0.90880 1.20037 1.20057 0.91774 0.97121 1.09268 1.18038 0.91252 0.87029 1.06975 1.41676 1.08202 1.03795 1.88619 1.17372 0.93605 0.90056 0.93417 1.19362 0.91683 1.04501 1.36919 0.90742 1.26584 1.04630 0.94483 0.92297 1.69961 1.39907 1.12436 1.23819 0.85357 0.77196 0.78478 0.79183 1.18485 1.19938 1.19020 1.20458 0.91087 0.97867 1.15703 0.92543 0.92147 0.92641 0.91930 0.92088 0.91730 0.91521 0.91475 0.91803 0.94140 0.93689 0.77801 0.87606 0.87052 0.78184 0.78194 0.91054 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.44 16 2 C -0.12 -2.05 5.93 30.60 0.18 -1.87 16 3 C -0.11 -2.15 5.21 30.60 0.16 -1.99 16 4 C -0.12 -2.86 5.33 30.60 0.16 -2.69 16 5 C 0.14 4.30 4.91 86.38 0.42 4.73 16 6 N -0.76 -30.32 5.74 -339.42 -1.95 -32.26 16 7 C 0.17 8.26 6.64 38.13 0.25 8.51 16 8 C -0.26 -11.97 9.31 22.56 0.21 -11.76 16 9 C -0.16 -7.26 9.86 22.35 0.22 -7.04 16 10 C 0.07 3.42 6.79 38.97 0.26 3.68 16 11 N -0.88 -36.11 8.98 -50.30 -0.45 -36.57 16 12 C 0.06 3.36 5.57 -21.18 -0.12 3.24 16 13 C -0.49 -26.81 8.48 23.35 0.20 -26.61 16 14 H 0.07 3.82 6.71 -2.91 -0.02 3.80 16 15 C 0.03 1.70 5.16 85.23 0.44 2.14 16 16 N -0.83 -45.31 10.97 21.82 0.24 -45.07 16 17 Si 0.98 39.59 29.59 68.60 2.03 41.62 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 C -0.23 -12.39 8.49 22.81 0.19 -12.20 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.30 7.93 -2.39 -0.02 1.29 16 32 H 0.04 1.41 7.95 -2.39 -0.02 1.39 16 33 H 0.39 14.91 8.48 -92.70 -0.79 14.12 16 34 H 0.11 4.33 6.69 -2.91 -0.02 4.31 16 35 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 36 H 0.39 13.22 8.83 -92.71 -0.82 12.40 16 37 H 0.39 15.82 7.06 -92.71 -0.65 15.17 16 38 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 39 H 0.10 5.56 6.23 -2.91 -0.02 5.54 16 Total: -1.00 -61.59 317.70 1.97 -59.61 By element: Atomic # 1 Polarization: 57.18 SS G_CDS: -1.20 Total: 55.98 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 3.30 Total: -43.31 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -2.16 Total: -113.90 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -61.59 1.97 -59.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166375456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.201 kcal (2) G-P(sol) polarization free energy of solvation -61.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds