Wall clock time and date at job start Mon Mar 30 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 C 1.53001 * 109.47133 * 299.99903 * 3 2 1 5 5 C 1.53005 * 109.47256 * 59.99899 * 3 2 1 6 6 N 1.46501 * 109.47412 * 180.02562 * 3 2 1 7 7 C 1.39843 * 120.00056 * 184.54907 * 6 3 2 8 8 C 1.39596 * 119.84430 * 354.51584 * 7 6 3 9 9 C 1.38061 * 120.55353 * 179.97438 * 8 7 6 10 10 C 1.38734 * 120.21597 * 0.02562 * 9 8 7 11 11 N 1.38871 * 120.15765 * 179.97438 * 10 9 8 12 12 C 1.41561 * 119.67649 * 0.02562 * 10 9 8 13 13 C 1.41031 * 120.26396 * 180.02562 * 12 10 9 14 14 H 1.07992 * 120.00260 * 34.90981 * 13 12 10 15 15 C 1.39887 * 119.99479 * 214.90230 * 13 12 10 16 16 N 1.30899 * 120.00371 * 5.07488 * 15 13 12 17 17 Si 1.86804 * 119.99723 * 185.07014 * 15 13 12 18 18 H 1.48501 * 109.46948 * 60.00553 * 17 15 13 19 19 H 1.48504 * 109.47086 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47215 * 300.00484 * 17 15 13 21 21 C 1.38012 * 119.83593 * 174.23660 * 7 6 3 22 22 H 1.09001 * 109.47573 * 60.00303 * 1 2 3 23 23 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47182 * 299.99708 * 1 2 3 25 25 H 1.08999 * 109.47182 * 240.00292 * 2 1 3 26 26 H 1.08996 * 109.47126 * 119.99580 * 2 1 3 27 27 H 1.09003 * 109.47080 * 175.05848 * 4 3 2 28 28 H 1.09001 * 109.47238 * 55.05909 * 4 3 2 29 29 H 1.08997 * 109.47253 * 295.06082 * 4 3 2 30 30 H 1.09004 * 109.47014 * 304.96775 * 5 3 2 31 31 H 1.08999 * 109.46947 * 64.96395 * 5 3 2 32 32 H 1.09004 * 109.47009 * 184.96911 * 5 3 2 33 33 H 0.97003 * 119.99171 * 4.54928 * 6 3 2 34 34 H 1.08005 * 119.72487 * 359.97438 * 8 7 6 35 35 H 1.08000 * 119.88914 * 180.02562 * 9 8 7 36 36 H 0.97001 * 120.00237 * 359.97438 * 11 10 9 37 37 H 0.97003 * 119.99398 * 180.02562 * 11 10 9 38 38 H 0.97001 * 119.99847 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.11626 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2493 5 6 1.5299 2.1638 1.2493 6 7 3.5050 1.4426 -0.0006 7 6 4.2041 2.6499 0.0953 8 6 3.5076 3.8595 0.0760 9 6 4.1830 5.0600 0.1702 10 6 5.5655 5.0761 0.2850 11 7 6.2437 6.2842 0.3793 12 6 6.2814 3.8550 0.3046 13 6 7.6869 3.8569 0.4213 14 1 8.1777 4.6067 1.0240 15 6 8.4452 2.8874 -0.2434 16 7 7.8606 2.0402 -1.0521 17 14 10.2921 2.8017 0.0231 18 1 10.5740 2.5546 1.4600 19 1 10.8588 1.6960 -0.7903 20 1 10.9119 4.0867 -0.3891 21 6 5.5791 2.6396 0.2145 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.8192 3.2138 -1.2061 28 1 0.4436 2.0877 -1.2947 29 1 1.9637 1.7036 -2.1370 30 1 0.4435 2.0874 1.2948 31 1 1.9641 1.7039 2.1370 32 1 1.8188 3.2140 1.2058 33 1 3.9899 0.6052 -0.0676 34 1 2.4313 3.8563 -0.0135 35 1 3.6333 5.9895 0.1546 36 1 5.7509 7.1196 0.3645 37 1 7.2104 6.2927 0.4591 38 1 8.3865 1.3682 -1.5133 39 1 6.1143 1.7017 0.2333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166376312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:35 Heat of formation + Delta-G solvation = 25.705274 kcal Electronic energy + Delta-G solvation = -18449.355553 eV Core-core repulsion = 15777.478870 eV Total energy + Delta-G solvation = -2671.876683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.81684 -36.96350 -33.65882 -33.30897 -30.94844 -29.85060 -28.78729 -26.83948 -26.21302 -24.94621 -23.32315 -21.08574 -19.78557 -18.75641 -16.91153 -16.36333 -15.43834 -15.04924 -14.90398 -14.51158 -14.47544 -13.60665 -13.25962 -12.69306 -12.44121 -12.14150 -11.98824 -11.95036 -11.81293 -11.42587 -11.41801 -11.07896 -11.00329 -10.88933 -10.75011 -10.63917 -10.34518 -9.94330 -9.80306 -9.61122 -9.11970 -8.96491 -7.69491 -7.06087 -6.47725 -5.45423 -4.05376 2.97935 3.16586 3.19402 3.33248 3.51921 4.10608 4.40630 4.91061 5.04208 5.15378 5.44682 5.46156 5.60384 5.66715 5.73036 5.91164 6.00716 6.07125 6.11210 6.20761 6.31844 6.34728 6.37577 6.42031 6.55327 6.83880 6.93258 7.19142 7.21992 7.39819 7.55357 7.78034 7.92285 8.03286 8.22319 8.52224 8.81545 8.98196 9.02882 9.06076 9.30115 9.38787 10.51992 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.006347 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.039782 B = 4410.525206 C = 5180.775902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.189 3.811 4 C -0.175 4.175 5 C -0.175 4.175 6 N -0.756 5.756 7 C 0.177 3.823 8 C -0.258 4.258 9 C -0.161 4.161 10 C 0.091 3.909 11 N -0.888 5.888 12 C 0.093 3.907 13 C -0.470 4.470 14 H 0.068 0.932 15 C 0.074 3.926 16 N -0.815 5.815 17 Si 0.904 3.096 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.270 1.270 21 C -0.185 4.185 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.386 0.614 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.373 0.627 37 H 0.389 0.611 38 H 0.273 0.727 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 -1.808 1.281 9.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.101 3.899 4 C -0.233 4.233 5 C -0.233 4.233 6 N -0.390 5.390 7 C 0.079 3.921 8 C -0.281 4.281 9 C -0.185 4.185 10 C -0.010 4.010 11 N -0.431 5.431 12 C 0.088 3.912 13 C -0.503 4.503 14 H 0.086 0.914 15 C -0.139 4.139 16 N -0.444 5.444 17 Si 0.730 3.270 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.195 1.195 21 C -0.209 4.209 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.219 0.781 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.198 0.802 37 H 0.217 0.783 38 H 0.083 0.917 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.286 -2.026 1.125 9.571 hybrid contribution 1.304 -0.119 -0.081 1.312 sum -7.982 -2.145 1.043 8.330 Atomic orbital electron populations 1.21871 0.95523 1.01212 1.02238 1.21690 0.96065 0.96389 1.01984 1.19853 0.82043 0.93796 0.94220 1.22594 0.99596 1.03024 0.98047 1.22579 0.99565 1.03434 0.97733 1.44500 1.02692 1.06104 1.85676 1.17479 0.91139 0.84767 0.98723 1.20228 0.97595 0.90983 1.19247 1.19784 0.92112 0.96030 1.10601 1.17975 0.90708 0.86568 1.05786 1.41825 1.08660 1.04214 1.88373 1.16956 0.92725 0.88676 0.92886 1.19040 0.91354 1.12221 1.27665 0.91404 1.25691 1.00059 0.94511 0.93688 1.69829 1.37205 1.15227 1.22098 0.86453 0.83223 0.78320 0.78986 1.19367 1.20731 1.19496 1.20549 0.89893 0.98504 1.11993 0.92290 0.93116 0.92285 0.91921 0.91881 0.90439 0.93004 0.92926 0.93001 0.92929 0.89996 0.78107 0.87320 0.89867 0.80177 0.78306 0.91670 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.22 37.16 0.34 -1.26 16 2 C -0.12 -1.59 5.11 -26.73 -0.14 -1.73 16 3 C 0.19 2.95 0.83 -131.81 -0.11 2.84 16 4 C -0.17 -2.69 8.13 37.16 0.30 -2.39 16 5 C -0.18 -2.68 7.98 37.16 0.30 -2.39 16 6 N -0.76 -14.54 5.25 -45.99 -0.24 -14.78 16 7 C 0.18 4.09 6.23 -83.78 -0.52 3.57 16 8 C -0.26 -5.69 7.04 -39.14 -0.28 -5.97 16 9 C -0.16 -3.67 9.86 -39.46 -0.39 -4.06 16 10 C 0.09 2.21 6.79 -83.22 -0.56 1.65 16 11 N -0.89 -18.43 8.98 32.75 0.29 -18.14 16 12 C 0.09 2.48 5.50 -106.66 -0.59 1.90 16 13 C -0.47 -12.57 8.27 -37.91 -0.31 -12.88 16 14 H 0.07 1.73 7.00 -52.49 -0.37 1.37 16 15 C 0.07 1.93 5.31 -17.33 -0.09 1.83 16 16 N -0.82 -21.88 11.01 55.55 0.61 -21.27 16 17 Si 0.90 19.48 29.56 -169.99 -5.03 14.45 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 C -0.19 -4.84 8.44 -38.75 -0.33 -5.16 16 22 H 0.06 0.61 6.32 -51.93 -0.33 0.28 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.61 6.32 -51.93 -0.33 0.28 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.33 4.84 -51.93 -0.25 1.08 16 28 H 0.05 0.66 6.18 -51.93 -0.32 0.34 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.66 6.18 -51.93 -0.32 0.34 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.40 4.64 -51.93 -0.24 1.16 16 33 H 0.39 7.25 8.49 -40.82 -0.35 6.90 16 34 H 0.11 2.15 3.09 -52.48 -0.16 1.99 16 35 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.37 6.55 8.83 -40.82 -0.36 6.19 16 37 H 0.39 7.97 7.22 -40.82 -0.29 7.68 16 38 H 0.27 6.82 8.30 -40.82 -0.34 6.48 16 39 H 0.11 3.13 6.52 -52.49 -0.34 2.78 16 LS Contribution 297.54 15.07 4.48 4.48 Total: -1.00 -28.19 297.54 -7.59 -35.78 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -5.33 Total: 23.52 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -2.38 Total: -24.05 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.66 Total: -54.19 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.19 -7.59 -35.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166376312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.489 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds